cluster # 4874

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Anopheles gambiae
cluster # 4874 cluster # 4874 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4874#0 length = 912 sequences # 1
consensus_4874#1 length = 518 sequences # 1

consensus_4874#2 length = 452 sequences # 1
consensus_4874#3 length = 88 sequences # 1

consensusID : consensus_4874#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 912
fasta sequence

                              [TTTTTTTTGTTGTGTGTTTATGTAGGTGTATCTGTGCTATATAAACGGTTTTCTTCTCGGCTGGAAATTTGGAACTTCTTATACAACACGAATAGTTCACTTGTCGGCTGCCTCACCGCGTGCCATATCCTCCCTTCCAGTACACAATTCACTTCATCCACGGCTTCGATTCACAAAACAATAATATTTTACTGCAACTCACAGAACTACACACAAGCACCTTTCGCATCATTCGTTACATTACATCATACTGCAGTGTTGTATGGATTTGCTGTTAATTATTGGTGGCTGTGGTTCCGTTTCTGTTGTTAAACAGTACTGCTGCTGCTGCTGTTTCCTCTCTTGTCTCTCGTACACCGCCACACGGTGGAGAACGGATGTTAGAACTGTTGTTGGCCATGCGGCAGGATTAGATGGCGTCGATTGCGTCGCCCTCCTCCGACGAGCTGTAGTCGTCGCCGAACTCGATATCGTCGTCCATGTCGTTCTCGACGAACGTCACCGTTTCGTTGATGCGCACCGACTCCGGGAACTCCGTGTCGGTGCTGTCGTCCTCCCGGCCGGACGGGGCCGCAAAAAGCTGGGCAAAGTCCTGCCCACTTTCGCGCACTTATTCGTACGTCCCGACTGCCTCCACCCGGCCGTGCATCATCACGACGATCTGGTCGGCGTTCTGCAGGTACTCAGCTGGGTGCGTCACCAGTATCACGATCTTGCCCCGCAGGTAGTCGCGCATGCAGTGGTCAAACAGGTGCCGGCCAACGTGCGAATCAACTGCGCTGAGTGGATCGTCGAGCAGGTACACTTCGGCCCGCCGGTACACCGCCCGGGCCAGGCTGATGCGTGCCTTCTGCCCGCCGGACAGCGATACACCGCGCTCGCCGACGATCGTTTTGTCGCCATCCGCAAACA]

[+] EMBL CNS08HVP             [TTTTTTTTGTTGTGTGTTTATGTAGGTGTATCTGTGCTATATAAACGGTTTTCTTCTCGGCTGGAAATTTGGAACTTCTTATACAACACGAATAGTTCACTTGTCGGCTGCCTCACCGCGTGCCATATCCTCCCTTCCAGTACACAATTCACTTCATCCACGGCTTCGATTCACAAAACAATAATATTTTACTGCAACTCACAGAACTACACACAAGCACCTTTCGCATCATTCGTTACATTACATCATACTGCAGTGTTGTATGGATTTGCTGTTAATTATTGGTGGCTGTGGTTCCGTTTCTGTTGTTAAACAGTACTGCTGCTGCTGCTGTTTCCTCTCTTGTCTCTCGTACACCGCCACACGGTGGAGAACGGATGTTAGAACTGTTGTTGGCCATGCGGCAGGATTAGATGGCGTCGATTGCGTCGCCCTCCTCCGACGAGCTGTAGTCGTCGCCGAACTCGATATCGTCGTCCATGTCGTTCTCGACGAACGTCACCGTTTCGTTGATGCGCACCGACTCCGGGAACTCCGTGTCGGTGCTGTCGTCCTCCCGGCCGGACGGGGCCGCAAAAAGCTGGGCAAAGTCCTGCCCACTTTCGCGCACTTATTCGTACGTCCCGACTGCCTCCACCCGGCCGTGCATCATCACGACGATCTGGTCGGCGTTCTGCAGGTACTCAGCTGGGTGCGTCACCAGTATCACGATCTTGCCCCGCAGGTAGTCGCGCATGCAGTGGTCAAACAGGTGCCGGCCAACGTGCGAATCAACTGCGCTGAGTGGATCGTCGAGCAGGTACACTTCGGCCCGCCGGTACACCGCCCGGGCCAGGCTGATGCGTGCCTTCTGCCCGCCGGACAGCGATACACCGCGCTCGCCGACGATCGTTTTGTCGCCATCCGCAAACA]




>consensus_4874#0
TTTTTTTTGTTGTGTGTTTATGTAGGTGTATCTGTGCTATATAAACGGTTTTCTTCTCGG
CTGGAAATTTGGAACTTCTTATACAACACGAATAGTTCACTTGTCGGCTGCCTCACCGCG
TGCCATATCCTCCCTTCCAGTACACAATTCACTTCATCCACGGCTTCGATTCACAAAACA
ATAATATTTTACTGCAACTCACAGAACTACACACAAGCACCTTTCGCATCATTCGTTACA
TTACATCATACTGCAGTGTTGTATGGATTTGCTGTTAATTATTGGTGGCTGTGGTTCCGT
TTCTGTTGTTAAACAGTACTGCTGCTGCTGCTGTTTCCTCTCTTGTCTCTCGTACACCGC
CACACGGTGGAGAACGGATGTTAGAACTGTTGTTGGCCATGCGGCAGGATTAGATGGCGT
CGATTGCGTCGCCCTCCTCCGACGAGCTGTAGTCGTCGCCGAACTCGATATCGTCGTCCA
TGTCGTTCTCGACGAACGTCACCGTTTCGTTGATGCGCACCGACTCCGGGAACTCCGTGT
CGGTGCTGTCGTCCTCCCGGCCGGACGGGGCCGCAAAAAGCTGGGCAAAGTCCTGCCCAC
TTTCGCGCACTTATTCGTACGTCCCGACTGCCTCCACCCGGCCGTGCATCATCACGACGA
TCTGGTCGGCGTTCTGCAGGTACTCAGCTGGGTGCGTCACCAGTATCACGATCTTGCCCC
GCAGGTAGTCGCGCATGCAGTGGTCAAACAGGTGCCGGCCAACGTGCGAATCAACTGCGC
TGAGTGGATCGTCGAGCAGGTACACTTCGGCCCGCCGGTACACCGCCCGGGCCAGGCTGA
TGCGTGCCTTCTGCCCGCCGGACAGCGATACACCGCGCTCGCCGACGATCGTTTTGTCGC
CATCCGCAAACA

consensusID : consensus_4874#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [AGAATCGCACGAGGTTCAGAGAGCACAACAAAGATCCGGATTTTCTGTGGCCGTGCAGTTCAGCAGCAGTCCAACCGAACTAACTTCCAGCCGAGGAAAAGCTAAACCGGGGTTCAGCAGAATGGCATCCGTTACGTCGAAAACGCCAATGCTTCGTGCGGCAGCGGCCGTGGCTTTGNCGGCCATGCACAGGCTGGCGTGNCAGCCGTGGCTCGGCGAAGTGCAGACGAACAACCTGGCCAAAAGCTGGTTGTGGCATCGGCGACCGAACGCTGCCGTGTCGCGGATTTCCATCGTTTTCCGTGCCGGATCGCGCAACGAAACTGGCGATTGGCTCGGTGCGGGCCACGTCCTGCGTGCGGCAGGAGGGCTCTCCAACAAGACGGGCACCGGCTTCGGTATTACGCGCAACATTCAGCAGGCGGGCGGTAGCCTAACGAACGCGGCGACGTGAGCTGGTAACGTACAGCGTCAGCCGTGACGAAGGATCAGCTGGAGGTGGGCCAGAAGTACCTGGA]

[+] EMBL AL696200             [AGAATCGCACGAGGTTCAGAGAGCACAACAAAGATCCGGATTTTCTGTGGCCGTGCAGTTCAGCAGCAGTCCAACCGAACTAACTTCCAGCCGAGGAAAAGCTAAACCGGGGTTCAGCAGAATGGCATCCGTTACGTCGAAAACGCCAATGCTTCGTGCGGCAGCGGCCGTGGCTTTGNCGGCCATGCACAGGCTGGCGTGNCAGCCGTGGCTCGGCGAAGTGCAGACGAACAACCTGGCCAAAAGCTGGTTGTGGCATCGGCGACCGAACGCTGCCGTGTCGCGGATTTCCATCGTTTTCCGTGCCGGATCGCGCAACGAAACTGGCGATTGGCTCGGTGCGGGCCACGTCCTGCGTGCGGCAGGAGGGCTCTCCAACAAGACGGGCACCGGCTTCGGTATTACGCGCAACATTCAGCAGGCGGGCGGTAGCCTAACGAACGCGGCGACGTGAGCTGGTAACGTACAGCGTCAGCCGTGACGAAGGATCAGCTGGAGGTGGGCCAGAAGTACCTGGA]




>consensus_4874#1
AGAATCGCACGAGGTTCAGAGAGCACAACAAAGATCCGGATTTTCTGTGGCCGTGCAGTT
CAGCAGCAGTCCAACCGAACTAACTTCCAGCCGAGGAAAAGCTAAACCGGGGTTCAGCAG
AATGGCATCCGTTACGTCGAAAACGCCAATGCTTCGTGCGGCAGCGGCCGTGGCTTTGNC
GGCCATGCACAGGCTGGCGTGNCAGCCGTGGCTCGGCGAAGTGCAGACGAACAACCTGGC
CAAAAGCTGGTTGTGGCATCGGCGACCGAACGCTGCCGTGTCGCGGATTTCCATCGTTTT
CCGTGCCGGATCGCGCAACGAAACTGGCGATTGGCTCGGTGCGGGCCACGTCCTGCGTGC
GGCAGGAGGGCTCTCCAACAAGACGGGCACCGGCTTCGGTATTACGCGCAACATTCAGCA
GGCGGGCGGTAGCCTAACGAACGCGGCGACGTGAGCTGGTAACGTACAGCGTCAGCCGTG
ACGAAGGATCAGCTGGAGGTGGGCCAGAAGTACCTGGA

consensusID : consensus_4874#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence

                              [CCGCCCACGCGTCCGATTTAATTTAGCTTATTTATTTTATTAAGTTAATTTTTTAATTTAATAATTAAATAAAGTAATATTTTAAAGCTCATCCCTTAAAATATTACTTTATTTAATTATTAAATTAAAAAATTAACTTAATAAAATAAATAAAGTAATATTTTAAGGGATGAGCTTTAAAATAAAATTTTATATTTTTTATAATTTTTAAATAAATATAAGCTTAAAAATAGCTATTATTAATAAATTTGTTATAATTTATTTTTTATAAAAAATTATTTAATTTAAATTAAATTATTTATTAAAATTTAAATTTTAATAATAAAAATTTAGTAATTATGATAAAATTAGTATATAAATTTATATAAAGTAATTAATTTGATAGGTTTTAATGAAGAATTCGGCAAATTAAATATATTCACCTGTTTAACAAAAACATGTCTTTTTGTATT]

[+] EMBL BM591275             [CCGCCCACGCGTCCGATTTAATTTAGCTTATTTATTTTATTAAGTTAATTTTTTAATTTAATAATTAAATAAAGTAATATTTTAAAGCTCATCCCTTAAAATATTACTTTATTTAATTATTAAATTAAAAAATTAACTTAATAAAATAAATAAAGTAATATTTTAAGGGATGAGCTTTAAAATAAAATTTTATATTTTTTATAATTTTTAAATAAATATAAGCTTAAAAATAGCTATTATTAATAAATTTGTTATAATTTATTTTTTATAAAAAATTATTTAATTTAAATTAAATTATTTATTAAAATTTAAATTTTAATAATAAAAATTTAGTAATTATGATAAAATTAGTATATAAATTTATATAAAGTAATTAATTTGATAGGTTTTAATGAAGAATTCGGCAAATTAAATATATTCACCTGTTTAACAAAAACATGTCTTTTTGTATT]




>consensus_4874#2
CCGCCCACGCGTCCGATTTAATTTAGCTTATTTATTTTATTAAGTTAATTTTTTAATTTA
ATAATTAAATAAAGTAATATTTTAAAGCTCATCCCTTAAAATATTACTTTATTTAATTAT
TAAATTAAAAAATTAACTTAATAAAATAAATAAAGTAATATTTTAAGGGATGAGCTTTAA
AATAAAATTTTATATTTTTTATAATTTTTAAATAAATATAAGCTTAAAAATAGCTATTAT
TAATAAATTTGTTATAATTTATTTTTTATAAAAAATTATTTAATTTAAATTAAATTATTT
ATTAAAATTTAAATTTTAATAATAAAAATTTAGTAATTATGATAAAATTAGTATATAAAT
TTATATAAAGTAATTAATTTGATAGGTTTTAATGAAGAATTCGGCAAATTAAATATATTC
ACCTGTTTAACAAAAACATGTCTTTTTGTATT

consensusID : consensus_4874#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 88
fasta sequence

                              [AGCGCGAACTGCAGCGAGCTCAGCTCCTGCCCGTCCAGCCCCTTGCCGTTGTTTTCGCCCTTTCTCGGCTGCCCCCGATGGCCGAACG]

[+] EMBL CNS094A3             [AGCGCGAACTGCAGCGAGCTCAGCTCCTGCCCGTCCAGCCCCTTGCCGTTGTTTTCGCCCTTTCTCGGCTGCCCCCGATGGCCGAACG]




>consensus_4874#3
AGCGCGAACTGCAGCGAGCTCAGCTCCTGCCCGTCCAGCCCCTTGCCGTTGTTTTCGCCC
TTTCTCGGCTGCCCCCGATGGCCGAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4874#1      ------------------------------------------------------------
consensus_4874#3      ------------------------------------------------------------
consensus_4874#0      TTTTTTTTGTTGTGTGTTTATGTAGGTGTATCTGTGCTATATAAACGGTTTTCTTCTCGG 60
consensus_4874#2      ------------------------------------------------------------
                                                                                  

consensus_4874#1      ------------------------------------------------------------
consensus_4874#3      ------------------------------------------------------------
consensus_4874#0      CTGGAAATTTGGAACTTCTTATACAACACGAATAGTTCACTTGTCGGCTGCCTCACCGCG 120
consensus_4874#2      ------------------------------------------------------------
                                                                                  

consensus_4874#1      ------------------------------------------------------------
consensus_4874#3      ------------------------------------------------------------
consensus_4874#0      TGCCATATCCTCCCTTCCAGTACACAATTCACTTCATCCACGGCTTCGATTCACAAAACA 180
consensus_4874#2      ------------------------------------------------------------
                                                                                  

consensus_4874#1      ------------------------------------------------------------
consensus_4874#3      ------------------------------------------------------------
consensus_4874#0      ATAATATTTTACTGCAACTCACAGAACTACACACAAGCACCTTTCGCATCATTCGTTACA 240
consensus_4874#2      ------------------------------------------------------------
                                                                                  

consensus_4874#1      -------AGAATCGCACGAGGTTCAGAGAGCACAACAAAGATCCGGATTTTCTGT---GG 50
consensus_4874#3      ------------------------------------------------------------
consensus_4874#0      TTACATCATACTGCAGTGTTGTATGGATTTGCTGTTAATTATTGGTGGCTGTGGTTCCGT 300
consensus_4874#2      ------------------------------------------------------------
                                                                                  

consensus_4874#1      CCGTGCAGTTCAGCAGCAGTCCAACCGAACTAACTTCCAGCCGAGGAAAAGCTAAACCGG 110
consensus_4874#3      ------------------------------------------------------------
consensus_4874#0      TTCTGTTGTTAAACAGTACTGCTGCTGCTGCTGTTTCCTCTCTTGTCTCTCGTACACCGC 360
consensus_4874#2      ------------------------------CCGCCCACGCGTCCGATTTAATTTAGCTTA 30
                                                                                  

consensus_4874#1      GGTTCAGCAGAATGGCATCCGTTACGTCGAAAACGCCAATGCTTCGTGCGGCAGCGGCCG 170
consensus_4874#3      ----------------------------------------AGCGCGAACTGCAGCGAGCT 20
consensus_4874#0      CACACGGTGGAGAACGGATGTTAGAACTGTTGTTGGCCATGCGGCAGGATTAGATGGCGT 420
consensus_4874#2      TTTATTTTATTAAGTTAATTTTTTAATTTAATAATTAAATAAAGTAATATTTTAAAGCTC 90
                                                                                  

consensus_4874#1      TGGCTTTGNC--GGCCATGC-ACAGGCTGGCG--TGNCAGCCGTGGCTCGGCGAAGTGCA 225
consensus_4874#3      CAGCTCCTGCCCGTCCAGCC-CCTTGCCGTTG--TTTTCGCCCTTTCTCGGC----TGCC 73
consensus_4874#0      CGATTGCGTCGCCCTCCTCCGACGAGCTGTAG--TCGTCGCCG-AACTCGATATCGTCGT 477
consensus_4874#2      ATCCCTTAAAATATTACTTTATTTAATTATTAAATTAAAAAATTAACTTAATAAAATAAA 150
                                                        *           **        *   

consensus_4874#1      GACGAACAACCTGGCCAAAAGCTG--GTTGTGGCATCGGCGACCGAACGCTGCCGTGTCG 283
consensus_4874#3      CCCGA------TGGCCGAACG--------------------------------------- 88
consensus_4874#0      CCATGTCGTTCTCGACGAACGTCACCGTTTCGTTGATGCGCACCGACTCCGGGAACTCCG 537
consensus_4874#2      TAAAGTAA---TATTTTAAGGGATGAGCTTTAAAATAAAATTTTATATTTTTTATAATTT 207
                                 *     ** *                                       

consensus_4874#1      CGG-ATTTCCATCGTTTTCCGTGCCGGATCGCGCAACGAAA--CTGGCGATTGGCTCGGT 340
consensus_4874#3      ------------------------------------------------------------
consensus_4874#0      TGTCGGTGCTGTCGTCCTCCCGGCCGGACGGGGCCGCAAAAAGCTGGGCAAAGTCCTGCC 597
consensus_4874#2      TTAAATAAATATAAGCTTAAAAATAGCTATTATTAATAAATTTGTTATAATTTATTTTTT 267
                                                                                  

consensus_4874#1      GCGGGCCACGTCCTGCGTGCGGCAGGAGGGCT--CTCCAACAAGACGGGCACCGGCTTCG 398
consensus_4874#3      ------------------------------------------------------------
consensus_4874#0      CACTTTCGCGCACTTATTCGTACGTCCCGACTG-CCTCCACCCGGCCGTGCATCATCACG 656
consensus_4874#2      ATAAAAAATTATTTAATTTAAATTAAATTATTTATTAAAATTTAAATTTTAATAATAAAA 327
                                                                                  

consensus_4874#1      GTATTACGCGCAACATTCAGCAGG----CGGGCGGTAGCCTAACGAACGCGGCGACGTGA 454
consensus_4874#3      ------------------------------------------------------------
consensus_4874#0      ACGATCTGGTCGGCGTTCTGCAGGTACTCAGCTGGGTGCGTCACCAGTATCACGATCTTG 716
consensus_4874#2      ATTTAGTAATTATGATAAAATTAGTATATAAATTTATATAAAGTAATTAATTTGATAGGT 387
                                                                                  

consensus_4874#1      GCTGGTAACGTACAGCGTCAGCCGTGACGAAGGATCAGCTGGAGGTGGGCCAGAAGTACC 514
consensus_4874#3      ------------------------------------------------------------
consensus_4874#0      CCCCGCAGGTAGTCGCGCATGCAGTGGTCAAACAGGTGCCGGCCAACGTGCGAATCAACT 776
consensus_4874#2      TTTAATGAAGAATTCGGCAAATTAAATATATTCACCTGTTTAACAAAAACATGTCTTTTT 447
                                                                                  

consensus_4874#1      TGGA-------------------------------------------------------- 518
consensus_4874#3      ------------------------------------------------------------
consensus_4874#0      GCGCTGAGTGGATCGTCGAGCAGGTACACTTCGGCCCGCCGGTACACCGCCCGGGCCAGG 836
consensus_4874#2      GTATT------------------------------------------------------- 452
                                                                                  

consensus_4874#1      ------------------------------------------------------------
consensus_4874#3      ------------------------------------------------------------
consensus_4874#0      CTGATGCGTGCCTTCTGCCCGCCGGACAGCGATACACCGCGCTCGCCGACGATCGTTTTG 896
consensus_4874#2      ------------------------------------------------------------
                                                                                  

consensus_4874#1      ----------------
consensus_4874#3      ----------------
consensus_4874#0      TCGCCATCCGCAAACA 912
consensus_4874#2      ----------------