cluster # 4881

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Anopheles gambiae
cluster # 4881 cluster # 4881 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4881#0 length = 778 sequences # 3

consensus_4881#1 length = 566 sequences # 1

consensusID : consensus_4881#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 778
fasta sequence

                              [GAGGCGGCGGAAGCGCTTTTAGCGGACGGGTACGCAATCGGGATCAACGGTTGTTCGTTGAAGACGGAGGAAAATCTGTCCGTGGCGGCCAAAATTCCAGACGCATCGATCATGCTCGAAACGGACAGCCCGTGGTGCGAGATACGGCCGTCCCATGCCGGCTCGAAGTACGTGCGCAGTAAATATCCTACGGTGAAGAAGAAGGAAAAGTGGGAAGCCGGTTCACTGATTGNGGGACGATGCGAACCGGTCATGATCAGCCAAGTGCTGGAAGTGCTTGCGGGCATTAAGGGAAAGCCGGCGGCCGAGCTGGCCGATCAGTACTACAAAAACACGGCAGAAATGTTCTTCCCAGCGAAGGGTAGTGACTGAACTTCACGATCATGCTGATTCCCCCGTCGGAAGTGTGATTGGCAAATAAATAAATCGAGATGAACGATATATTACTCACGCCCAAAATGGATGAAAGAAACGATTTTTAAACAGCACACGCGTTGTTTACACAGTGCGGCGATGAGGGTGAGAGATTTTCCTTTTGGAGGGGTGGGAGGTGCGCCACCGCTCTTACACTTTTTGTATTCGCATCCATCCGGAGGCTTCACTTCGACCTGTTTGGCACCGATGTCCCAATCGTGCTTCTTCTTGGCCGCGGCCGCACTGCCAGCCGCCGCCGATTGCTCCGGCGCCTTCCGCTCCAGCGCTTCCCACCGCTGGCCGATCAGCTTCGCCAGCTTCACCTCCACCTTGCTCGGGGTGGCTTTGTGCGTGCTCTGCTCCG]

[-] EMBL AGA283884            [GAGGCGGCGGAAGCGCTTTTAGCGGACGGGTACGCAATCGGGATCAACGGTTGTTCGTTGAAGACGGAGGAAAATCTGTCCGTGGCGGCCAAAATTCCAGACGCATCGATCATGCTCGAAACGGACAGCCCGTGGTGCGAGATACGGCCGTCCCATGCCGGCTCGAAGTACGTGCGCAGTAAATATCCTACGGTGAAGAAGAAGGAAAAGTGGGAAGCCGGTTCACTGATTGNGGGACGATGCGAACCGGTCATGATCAGCCAAGTGCTGGAAGTGCTTGCGGGCATTAAGGGAAAGCCGGCGGCCGAGCTGGCCGATCAGTACTACAAAAACACGGCAGAAATGTTCTTCCCAGCGAAGGGTAGTGACTGAACTTCACGATCATGCTGATTCCCCCGTCGGAAGTGTGATTGGCAAATAAATAAATCGCGCTGAAaaaaaa                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AGA281935            [                                                                                                                                                                                                                                                                                                                                        AAAACACGGCAGAAATGTTCTTCCCAGCGAAGGGTAGTGACTGAACTTCACGATCATGCTGATTCCCCCGTCGGAAGTGTGATTGGCAAATAAATAAATCGAGATGAACGATATATTACTCACGCCCAAAATGGATGAAAGAAACGATTTTTAAACAGCACACGCGTTGTTTACACAGTGCGGCGATGAGGGTGAGAGATTTTCCTTTTGGAGGGGTGGGAGGTGCGCCACCGCTCTTACACTTTTTGTATTCGCATCCATCCGGAGGCTTCACTTCGACCTGTTTGGCACCGA                                                                                                                                                            ]
[-] EMBL BX615538             [                                                                                                                                                                                                                                                                                                                                                                                                TGCTGATTCCCCCGTCGGAAGTGTGATTGGCAAATAAATAAATCGAGATGAACGATATATTACTCACGCCCAAAATGGATGAAAGAAACGATTTTTAAACAGCACACGCGTTGTTTACACAGTGCGGCGATGAGGGTGAGAGATTTTCCTTTTGGAGGGGTGGGAGGTGCGCCACCGCTCTACCACTTTTTGTATTCGCATCCATCCGGAGGCTTCACTTCGATTTCTTTCGTGATTTTGTCCCAATCGTGCTTCTTCTTGGCCGCGGCCGCACTGCCAGCCGCCGCCGATTGCTCCGGCGCCTTCCGCTCCAGCGCTTCCCACCGCTGGCCGATCAGCTTCGCCAGCTTCACCTCCACCTTGCTCGGGGTGGCTTTGTGCGTGCTCTGCTCCG]




>consensus_4881#0
GAGGCGGCGGAAGCGCTTTTAGCGGACGGGTACGCAATCGGGATCAACGGTTGTTCGTTG
AAGACGGAGGAAAATCTGTCCGTGGCGGCCAAAATTCCAGACGCATCGATCATGCTCGAA
ACGGACAGCCCGTGGTGCGAGATACGGCCGTCCCATGCCGGCTCGAAGTACGTGCGCAGT
AAATATCCTACGGTGAAGAAGAAGGAAAAGTGGGAAGCCGGTTCACTGATTGNGGGACGA
TGCGAACCGGTCATGATCAGCCAAGTGCTGGAAGTGCTTGCGGGCATTAAGGGAAAGCCG
GCGGCCGAGCTGGCCGATCAGTACTACAAAAACACGGCAGAAATGTTCTTCCCAGCGAAG
GGTAGTGACTGAACTTCACGATCATGCTGATTCCCCCGTCGGAAGTGTGATTGGCAAATA
AATAAATCGAGATGAACGATATATTACTCACGCCCAAAATGGATGAAAGAAACGATTTTT
AAACAGCACACGCGTTGTTTACACAGTGCGGCGATGAGGGTGAGAGATTTTCCTTTTGGA
GGGGTGGGAGGTGCGCCACCGCTCTTACACTTTTTGTATTCGCATCCATCCGGAGGCTTC
ACTTCGACCTGTTTGGCACCGATGTCCCAATCGTGCTTCTTCTTGGCCGCGGCCGCACTG
CCAGCCGCCGCCGATTGCTCCGGCGCCTTCCGCTCCAGCGCTTCCCACCGCTGGCCGATC
AGCTTCGCCAGCTTCACCTCCACCTTGCTCGGGGTGGCTTTGTGCGTGCTCTGCTCCG

consensusID : consensus_4881#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [CCGGAATCACACACACACACGGCAAAAACAGACAGCCAGGTCAAAGTGTCAAGGCTGAAGATAAGCCTGCCGAGGGCAAGTGTTGATCTCGCGTCGTTGAAGCTGTGCGGCTCGGTGTGTGAGAGGGTTCATTCCAGCTTCCCAGCGTCAGGTGAATAATTGTGTGATTCCCCTTGAAACTGAGTGTGCGGTGGTGCGCGTGGTGTACTGTTAAGAACGGGTATCGGTGTCCTAAATTCAGCCAAAACACTGCTACAGATAGAAGAGAGAAATAAGAACACACACACACTCACTCAAGCTTCTTCTCCATTGAGATTCGGAACGTTTAAGATCAGCAAAAGAACCGTAAGAAATAGGAAACAGACAGATAGAGAGATAGGCATGAGCGCACAGAGAGAGAGAGGGAGAGCGAGCATCCTTTCGCCAGATGGGAAGGCTCCACACCCCACCCCATCCAAACGATTAGGACAATGTCTATGTAAATCTATTTAATTTAATTTATGCTAGAATTAAAATAGTTTGACAGAAATCGGTTTTTGATCGATCGCCCGGGAAACTGGAAGGAG]

[+] EMBL BM625505             [CCGGAATCACACACACACACGGCAAAAACAGACAGCCAGGTCAAAGTGTCAAGGCTGAAGATAAGCCTGCCGAGGGCAAGTGTTGATCTCGCGTCGTTGAAGCTGTGCGGCTCGGTGTGTGAGAGGGTTCATTCCAGCTTCCCAGCGTCAGGTGAATAATTGTGTGATTCCCCTTGAAACTGAGTGTGCGGTGGTGCGCGTGGTGTACTGTTAAGAACGGGTATCGGTGTCCTAAATTCAGCCAAAACACTGCTACAGATAGAAGAGAGAAATAAGAACACACACACACTCACTCAAGCTTCTTCTCCATTGAGATTCGGAACGTTTAAGATCAGCAAAAGAACCGTAAGAAATAGGAAACAGACAGATAGAGAGATAGGCATGAGCGCACAGAGAGAGAGAGGGAGAGCGAGCATCCTTTCGCCAGATGGGAAGGCTCCACACCCCACCCCATCCAAACGATTAGGACAATGTCTATGTAAATCTATTTAATTTAATTTATGCTAGAATTAAAATAGTTTGACAGAAATCGGTTTTTGATCGATCGCCCGGGAAACTGGAAGGAG]




>consensus_4881#1
CCGGAATCACACACACACACGGCAAAAACAGACAGCCAGGTCAAAGTGTCAAGGCTGAAG
ATAAGCCTGCCGAGGGCAAGTGTTGATCTCGCGTCGTTGAAGCTGTGCGGCTCGGTGTGT
GAGAGGGTTCATTCCAGCTTCCCAGCGTCAGGTGAATAATTGTGTGATTCCCCTTGAAAC
TGAGTGTGCGGTGGTGCGCGTGGTGTACTGTTAAGAACGGGTATCGGTGTCCTAAATTCA
GCCAAAACACTGCTACAGATAGAAGAGAGAAATAAGAACACACACACACTCACTCAAGCT
TCTTCTCCATTGAGATTCGGAACGTTTAAGATCAGCAAAAGAACCGTAAGAAATAGGAAA
CAGACAGATAGAGAGATAGGCATGAGCGCACAGAGAGAGAGAGGGAGAGCGAGCATCCTT
TCGCCAGATGGGAAGGCTCCACACCCCACCCCATCCAAACGATTAGGACAATGTCTATGT
AAATCTATTTAATTTAATTTATGCTAGAATTAAAATAGTTTGACAGAAATCGGTTTTTGA
TCGATCGCCCGGGAAACTGGAAGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4881#0      GAGGCGGCGGAAGCGCTTTTAGCGGACGGGTACGCAATCGGGATCAACGGTTGTTCGTTG 60
consensus_4881#1      ------------------------------------------------------------
                                                                                  

consensus_4881#0      AAGACGGAGGAAAATCTGTCCGTGGCGGCCAAAATTCCAGACGCATCGATCATGCTCGAA 120
consensus_4881#1      ----------------------------CCGGAATCACACACACA-----CACGGCAAAA 27
                                                  **  ***  ** ** **     ** *    **

consensus_4881#0      ACGGACAGCCCGTGGTGCGAGATACGGCCGTCC-CATGCCGGCTCGAAGTACGTGCGCAG 179
consensus_4881#1      ACAGACAGCCAGGTCAAAGTGTCAAGGCTGAAGATAAGCCTGCCGAGGGCAAGTGTTGAT 87
                      ** ******* *      * *  * *** *     * *** **     * * ***   * 

consensus_4881#0      TAAATATC-CTACGGTGAAGAAGAAGGAAAAGTGGGAAGCCGGTTCACTGATTGNGGG-A 237
consensus_4881#1      CTCGCGTCGTTGAAGCTGTGCGGCTCGGTGTGTGAGAGGGTTCATTCCAGCTTCCCAGCG 147
                            **  *   *    *  *   *    *** ** *     *  * * **    *  

consensus_4881#0      CGATGCGAACCGGT-CATGATCAGCCAAGTGCTGGAAGTGCTTGCGGGCATTAAGGGAAA 296
consensus_4881#1      TCAGGTGAATAATTGTGTGATTCCCCTTGAAACTGA-GTGTGCGGTGGTGCGCGTGGTGT 206
                        * * ***    *   ****   **  *     ** ***   *  **       **   

consensus_4881#0      GCCGGCGGCCGAGCTGGCCGATCAGTACTACAAAAACACGGCAGAAATGTTCTTCCCAGC 356
consensus_4881#1      ACTGTTAA--GAACGGGT--ATCGGTGTCCTAAATTCA--GCCAAAACACTGCTACAGAT 260
                       * *      ** * **   *** **     ***  **  **  ***   *  * *    

consensus_4881#0      GAAGGGTAGTGACTGAACTTCACGATCATGCTGATTCCCCCGTCGGAAGTGTGATTGGCA 416
consensus_4881#1      AGAAGAGAGAAATAAGAACACACA--CACACTCACTCAAGCTTCT---TCTCCATTGAGA 315
                        * *  **  *    *   ***   **  ** * **   * **         ****  *

consensus_4881#0      AATAAATAAATCGAGATGAACGATATATTACTCACGCCCAAAATGGATGAAAGAAACGAT 476
consensus_4881#1      TTCGGAACGTTTAAGATCAGCAAAAGAAC-----CGTAAGAAATAG--GAAACAGACAGA 368
                           *    *  **** * * * * *       **    **** *  **** * **   

consensus_4881#0      TTTTAAACAGCACACGCGTTGTTTACACAGTGCGGCGATGAGGGTGAGAGATTTTCCTTT 536
consensus_4881#1      ---TAGAGAG-ATAGGCAT-GAGCGCACAGAGAGAGA--GAGGGAGAGCGAGCATCCTTT 421
                         ** * ** * * ** * *    ***** * *     ***** *** **   ******

consensus_4881#0      TGGAGGGGTGGGAGGTGCGCCACCGCTCTTACACTTTTTGTATTCGCATC-CATCCGGAG 595
consensus_4881#1      CGCCAGATGGGAAGGCTCCACACCCCACCC-CATCCAAACGATTAGGACAATGTCTATGT 480
                       *   *   ** ***  *  **** * *   **        *** * *     **     

consensus_4881#0      GCTTCACTTCGACCTGTTTGGCACCGATGTCCCAATCGTGCTTCTTCTTGGCCGCGGCCG 655
consensus_4881#1      AAATCTATTTAATTTAATTTATGCTAGAATTAAAATAGT--------TTGACAGAAATCG 532
                         **  **  *  *  **    *     *   *** **        *** * *    **

consensus_4881#0      CACTGCCAGCCGCCGCCGATTGCTCCGGCGCCTTCCGCTCCAGCGCTTCCCACCGCTGGC 715
consensus_4881#1      GTTTTTGATCGATCGCCCGGGAAACTGGAAGGAG-------------------------- 566
                         *   * *   ****       * **                                

consensus_4881#0      CGATCAGCTTCGCCAGCTTCACCTCCACCTTGCTCGGGGTGGCTTTGTGCGTGCTCTGCT 775
consensus_4881#1      ------------------------------------------------------------
                                                                                  

consensus_4881#0      CCG 778
consensus_4881#1      ---