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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4882#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1023 fasta sequence
[CTCCTCTCCTAAACAGATGTTATATTTTTTTCTTCATCTTTCACAAGTTGTTATCGTGTGTGCTTCTTCTAACCTTCTGCTAGATACGATTCCAGCACAAGCTTTACACAGAAAGGTTTCTCCGCGGATGAGTGTGGAAAGGATTGATTGCGCGCGTACAACGCCCAGGAGAAACGTATCTGAGGAGAGTAGGAATGCAAAAAGGATACACACGCGCGCACACACAGTGTAAAAAAACTCCGATACGCACGACGCAGCATCCTCTCCTTTTCCCGCTCTGAACACTCCTCCCCATTATTCCCCACCGGGGCAGGAGAAAAAGAGAGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGCTTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTA-CCGCACGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGTCGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGAAGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACTTAATTATATTGTACGCATCCATGCGGCTGCGCTTGGCGACCGACTTCCTCGGGTACTTGGGACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTCGGGATCTTGCGGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGCACGCAGCATAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGGTCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCGGCTTCTTCTTCTCTTTCTTTTCGGCCGGTTGGCGGCGGGCTTCTCAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTGGTGCAGCCGCTGGCTTCTTCTCAGCAGCTGGCTTCTTC]
[+] EMBL CNS09NJI [CTCCTCTCCTAAACAGATGTTATATTTTTTTCTTCATCTTTCACAAGTTGTTATCGTGTGTGCTTCTTCTAACCTTCTGCTAGATACGATTCCAGCACAAGCTTTACACAGAAAGGTTTCTCCGCGGATGAGTGTGGAAAGGATTGATTGCGCGCGTACAACGCCCAGGAGAAACGTATCTGAGGAGAGTAGGAATGCAAAAAGGATACACACGCGCGCACACACAGTGTAAAAAAACTCCGATACGCACGACGCAGCATCCTCTCCTTTTCCCGCTCTGAACACTCCTCCCCATTATTCCCCACCGGGGCAGGAGAAAAAGAGAGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGCTTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTA CCGCACGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGTCGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGAAGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACTTAATTATATTGTACGCATCCATGCGGCTGCGCTTGGCGACCGACTTCCTCGGGTACTTGGGACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTCGGGATCTTGCGGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGCACGCAGCATAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGGTCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCGGCTTCTTCTTCTCTTTCTTTTCGGCCGGTTGGCGGCGGGCTTCTCAG ]
[-] EMBL CNS08EVA [ ATACACACGCGCGCACACACAGTGTAAAAAAACTCCGATACGCACGACGCAGCATCCTCTCCTTTTCCCGCTCTGAACACTCCTCCCCATTATTCCCCACCGGGGCAGGAGAAAAAGAGAGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGCTTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTAGCCGCACGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGTCGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGAAGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACTTAATTATATTGTACGCATCCATGC GCTGCGCTTGGCGACCGACTTCCTCGGGTACTTGGGACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTGCGGATCTTGCGGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGCACGCAGCATAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGGTCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCGGCTTCTTCTTCTC GC CAGCC TTGGCGGGCTTCTTCTCAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTGGTGCAGCCGCTGGCTTCTTCTCAGCAGCTGGCTTCTTC]
consensusID : consensus_4882#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 876 fasta sequence
[AGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGCTTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTAGCCGCACGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGTCGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGAAGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACTTAATTATATTGTACGCATCCATGCGG-TGCGCTTGGCGACCGACTTCC-TCGGGTACTTGGGACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTGCGGATCTTGCGGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGC-ACGCAGCATAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGGTCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCGGCTTCTTCTTCTCGCCAGCCTTGGCGGGCTTGC------C--AC----CGGCACGCTTCTCGGCCTTCTTCTCCTCGGCGGGCTTCTTCTCAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTGGTGCAGCCGCTGGCTTCTTCTCAGCTGCTGGCTTCTTCTCCCGCCGCGGGCTTCTTTTCCGCTGCGGGTTTCTTCTCACCAGATCCGGAAGCCGTAGCAGCGGCGGCGGCTGCCGGCTTCTTCTCTTTCTTTTCGGCCGGTTGGCCGGCGGGCTTCTCAGACGGTTTCTTCGGACCCATAC]
[-] EMBL CNS09RE0 [AGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGCTTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTAGCCGCACGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGTCGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGAAGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACTTAATTATATTGTACGCATCCATGCGG TGCGCTTGGCGACCGACTTCC TCGGGTACTTGGGACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTGCGGATCTTGCGGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGC ACGCAGCATAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGGTCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCGGCTTCTTCTTCTCGCCAGCCTTGGCGGGCTTGC C AC CGGCACGCTTCTCGGCCTTCTTCTCCTCGGCGGGCTTCTTCTCAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTGGTGCAGCCGCTGGCTTCTTCTCAGCTGCTGGCTTCTTCTCCCGCCGCGGGCTTCTTTTCCGCTGCGGGTTTCTTCTCACCAGATCCGGAAGCCGTAGCAGCGGCGGCGGCTGCCGGCTTCTTCTCTTTCTTTTCGGCCGGTTGGCCGGCGGGCTTCTCAGACGGTTTCTTCGGACCCATAC]
[-] EMBL BM652071 [ AGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACTTAATTATATTGTACGCATCCATGCGGCTGCGCTTGGCGACCGACTTCCTTCGGGTACTTGGGACGACGCGGAAGTTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTGCGGATCTTGCGGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGCTACGCAGCATAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGGTCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCGGCTTCTTCTTCTCGCCAGCCTTGGCGGGCTTGCTGTCGGCGGCCGGTGCGGCACGCTTCTCGGCCTTCTTCTCCTCGGCGGGCTTCTTCTCAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTGGTGCAGCCGCTGGCTTCTTCTCAGCTGCTGGCTTCTTCT CCGCCGCGGGCTTCTTTTCCGCTGCGGGTTTCTTCTCACCAGATCCGGAAGCCGTAGCAGCGGCGGCGGCTGCCGGCTTCTTCTCTTTCTTTTCGGCCGGTTGGCCGGCGGGCTTCTCAGACGGTTTCTTCGGACCgg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4882#0 CTCCTCTCCTAAACAGATGTTATATTTTTTTCTTCATCTTTCACAAGTTGTTATCGTGTG 60
consensus_4882#1 ------------------------------------------------------------
consensus_4882#0 TGCTTCTTCTAACCTTCTGCTAGATACGATTCCAGCACAAGCTTTACACAGAAAGGTTTC 120
consensus_4882#1 ------------------------------------------------------------
consensus_4882#0 TCCGCGGATGAGTGTGGAAAGGATTGATTGCGCGCGTACAACGCCCAGGAGAAACGTATC 180
consensus_4882#1 ------------------------------------------------------------
consensus_4882#0 TGAGGAGAGTAGGAATGCAAAAAGGATACACACGCGCGCACACACAGTGTAAAAAAACTC 240
consensus_4882#1 ------------------------------------------------------------
consensus_4882#0 CGATACGCACGACGCAGCATCCTCTCCTTTTCCCGCTCTGAACACTCCTCCCCATTATTC 300
consensus_4882#1 ------------------------------------------------------------
consensus_4882#0 CCCACCGGGGCAGGAGAAAAAGAGAGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGC 360
consensus_4882#1 ------------------------AGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGC 36
************************************
consensus_4882#0 TTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTA-CCGCA 419
consensus_4882#1 TTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTAGCCGCA 96
****************************************************** *****
consensus_4882#0 CGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGT 479
consensus_4882#1 CGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGT 156
************************************************************
consensus_4882#0 CGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGA 539
consensus_4882#1 CGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGA 216
************************************************************
consensus_4882#0 AGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACT 599
consensus_4882#1 AGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACT 276
************************************************************
consensus_4882#0 TAATTATATTGTACGCATCCATGCGGCTGCGCTTGGCGACCGACTTCCTCGGGTACTTGG 659
consensus_4882#1 TAATTATATTGTACGCATCCATGCGG-TGCGCTTGGCGACCGACTTCCTCGGGTACTTGG 335
************************** *********************************
consensus_4882#0 GACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTCGGGATCTTGC 719
consensus_4882#1 GACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTGCGGATCTTGC 395
************************************************* *********
consensus_4882#0 GGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGCACGCAGCA 779
consensus_4882#1 GGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGCACGCAGCA 455
************************************************************
consensus_4882#0 TAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGG 839
consensus_4882#1 TAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGG 515
************************************************************
consensus_4882#0 TCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCG 899
consensus_4882#1 TCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCG 575
************************************************************
consensus_4882#0 GCTTCTTCTTCTCTTTCTTTTCGGCCGGTTGGC--------------------------- 932
consensus_4882#1 GCTTCTTCTTCTCGCCAGCCTTGGCGGGCTTGCCACCGGCACGCTTCTCGGCCTTCTTCT 635
************* * *** ** * **
consensus_4882#0 ----GGCGGGCTTCT---CAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTG 985
consensus_4882#1 CCTCGGCGGGCTTCTTCTCAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTG 695
*********** ******************************************
consensus_4882#0 GTGCAGCCGCTGGCTTCTTCTCAGCAGCTGGCTTCTTC---------------------- 1023
consensus_4882#1 GTGCAGCCGCTGGCTTCTTCTCAGCTGCTGGCTTCTTCTCCCGCCGCGGGCTTCTTTTCC 755
************************* ************
consensus_4882#0 ------------------------------------------------------------
consensus_4882#1 GCTGCGGGTTTCTTCTCACCAGATCCGGAAGCCGTAGCAGCGGCGGCGGCTGCCGGCTTC 815
consensus_4882#0 ------------------------------------------------------------
consensus_4882#1 TTCTCTTTCTTTTCGGCCGGTTGGCCGGCGGGCTTCTCAGACGGTTTCTTCGGACCCATA 875
consensus_4882#0 -
consensus_4882#1 C 876
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||