These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 942 fasta sequence [AATGCGATTTTAGGGAAGAACATTGCTATAGCCATCGGAATATATATTAGTTAATACACGTTTTAAGTATAGACTCTCCTACACCTCCACAGCGTTTCACACCAGTTGGAGATGTGGGCGAGTGCGTACACAAAAAGAATCGTATTAAGTGGGTAGTATAAGTTATTAAACGATACAAGACAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCGAAACCGTACATCTAGTGTAGTGCAAACCCGTGCGTGTGTGTGTGTTTGTAGGGATAGTCGTCAGCTGTGTGTGCCTGTCGTCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAATTACCCCTTACAGGAAAAGAAAATAATTCTAGCAAAAGTTAATTCACTAACGCATATGTTAACTGATGATAATAGCGCGTTTGAGTTGCTTTGAGTAGCAAACGTTGTAGAGCAAACAAACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTTGTTGTTGTAATGTTTTCGGGATTTGAAGAGGTAGTTAAAAACGAAATTCGACTAAAACAATATACATATTCAGCCTAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACACGGCAGATCAAAACAAAAAGCAGCAAACGCAAGATGTAATCAAGATACATATATCTACGTTAAACGTCCGTTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGAAATCCCATATTTTAATGCAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTAAGCGAACATCGCAGACATGTAAGACATACATACCTACATACAAAACACATTAAAAAAGAAGAGAACAAACAACACACACCGCGAAAAATAAGAGAAAATATAGTGAATTTA] [+] EMBL BX608669 [AATGCGATTTTAGGGAAGAACATTGCTATAGCCATCGGAATATATATTAGTTAATACACGTTTTAAGTATAGACTCTCCTACACCTCCACAGCGTTTCACACCAGTTGGAGATGTGGGCGAGTGCGTACACAAAAAGAATCGTATTAAGTGGGTAGTATAAGTTATTAAACGATACAAGACAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCGAAACCGTACATCTAGTGTAGTGCAAACCCGTGCGTGTGTGTGTGTTTGTAGGGATAGTCGTCAGCTGTGTGTGCCTGTCGTCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAATTACCCCTTACAGGAAAAGAAAATAATTCTAGCAAAAGTTAATTCACTAACGCATATGTTAACTGATGATAATAGCGCGTTTGAGTTGCTTTGAGTAGCAAACGTTGTAGAGCAAACAAACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTTGTTGTTGTAATGTTTTCGGGATTTGAAGAGGTAGTTAAAAACGAAATTCGACTAAAACAATATACATATTCAGCCTAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACACGGCAGATCAAAACAAAAAGCAGCAAACGCAAGATGTAATCAAGATACATATATCTACGTTAAACGTCCGTTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGAAATCCCATATTTTAATGCAAAATCG ] [+] EMBL BX615579 [ GCTGTGTGTGCCTGTCGTCGTGTGCGCTTTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAATTACCCCTTACAGGAAAAGAAAATAATTCTAGCAAAAGTTAATTCACTAACGCATATGTTAACTGATGATAATAGCGCGTTTGAGTTGCTTTGAGTAGCAAACGTTGTAGAGCAAACAAACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTTGTTGTTGTAATGTTTTCGGGATTTGAAGAGGTAGTTAAAAACGAAATTCGACTAAAACAATATACATATTCAGCCTAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACACGGCAGATCAAAACAAAAAGCAGCAAACGCAAGATGTAATCAAGATACATATATCTACGTTAAACGTCCGTTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGAAATCCCATATTTTAATGCAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTAAGCGAACATCGCAGACATGTAAGACATACATACCTACATACAAAACACATTAAAAAAGAAGAGAACAAACAACACACACCGCGAAAAATAAGAGAAAATATAGTGAATTTA] consensusID : consensus_4889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [CCGCGGACGCGTGGGCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAATTACCCCTTACAGGAAAAGAAAATAATTCTAGCAAAAGTTAATTCACTAACGCATATGTTAACTGATGATAATAGCGCGTTTGAGTTGCTTTGAGTAGCAAACGTTGTAGAGCAAACATACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTTGTTGTTGTAATGTTTTCGGAATTTGAAGAGGTAGTTAAAAACAAAATTCGACAAAAACAATATACATATTCAGCATAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACACGGCAGATCAAAACAAAAAAGCAGCAAACGCAAGATGTAATCACGATACATATATCTACGTTAAACGTCCGTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGTAATCCCATATTTTAATGCAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTAAGCGGAACAT] [+] EMBL BM592627 [CCGCGGACGCGTGGGCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAATTACCCCTTACAGGAAAAGAAAATAATTCTAGCAAAAGTTAATTCACTAACGCATATGTTAACTGATGATAATAGCGCGTTTGAGTTGCTTTGAGTAGCAAACGTTGTAGAGCAAACATACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTTGTTGTTGTAATGTTTTCGGAATTTGAAGAGGTAGTTAAAAACAAAATTCGACAAAAACAATATACATATTCAGCATAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACACGGCAGATCAAAACAAAAAAGCAGCAAACGCAAGATGTAATCACGATACATATATCTACGTTAAACGTCCGTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGTAATCCCATATTTTAATGCAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTAAGCGGAACAT] consensusID : consensus_4889#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [GTGGGCGAGTGCGTACACAAAAAGAATCGTATTAAGTGGGTAGTATAAGTTATTAAACGATACAAGACAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCGAAACCGTACATGTAGTGTAGTGCAAACCCGTGCGTGTGTGTGTGTGTGTGTGTNGTAGGGGTTAGTNCGTCACGNNTGTGTGTNGCNCTGTTCGTTCGTGTCGCNGTCATTCA] [+] EMBL CF541493 [GTGGGCGAGTGCGTACACAAAAAGAATCGTATTAAGTGGGTAGTATAAGTTATTAAACGATACAAGACAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCGAAACCGTACATGTAGTGTAGTGCAAACCCGTGCGTGTGTGTGTGTGTGTGTGTNGTAGGGGTTAGTNCGTCACGNNTGTGTGTNGCNCTGTTCGTTCGTGTCGCNGTCATTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4889#0 AATGCGATTTTAGGGAAGAACATTGCTATAGCCATCGGAATATATATTAGTTAATACACG 60 consensus_4889#1 ------------------------------------------------------------ consensus_4889#2 ------------------------------------------------------------ consensus_4889#0 TTTTAAGTATAGACTCTCCTACACCTCCACAGCGTTTCACACCAGTTGGAGATGTGGGCG 120 consensus_4889#1 ------------------------------------------------------------ consensus_4889#2 ------------------------------------------------------------ consensus_4889#0 AGTGCGTACACAAAAAGAATCGTATTAAGTGGGTAGTATAAGTTATTAAACGATACAAGA 180 consensus_4889#1 ------------------------------------------------------------ consensus_4889#2 ------------------------------------------------------------ consensus_4889#0 CAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCGAAACCGTACATCTAG 240 consensus_4889#1 ------------------------------------------------------------ consensus_4889#2 ------------------------------------------------------------ consensus_4889#0 TGTAGTGCAAACCCGTGCGTGTGTGTGTGTTTGTAGGGATAGTCGTCAGCTGTGTGTGCC 300 consensus_4889#1 ---------------------------------------------------CCGCGGACG 9 consensus_4889#2 ------------------------------------------------------------ consensus_4889#0 TGTCGTCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAA 360 consensus_4889#1 CGTGGGCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAA 69 consensus_4889#2 -GTGGGCGAGTGCGTACACAAAAAGAATCGTATTAAG-----TGGGTAGTATAAGTT--A 52 ** * ** ***** * * ** ** ***** * * * ** * * consensus_4889#0 TTACCCCTTACAGGAAAAGAAAATAATTCTA-GCAAAAGTTAATTCACTAACGCATATGT 419 consensus_4889#1 TTACCCCTTACAGGAAAAGAAAATAATTCTA-GCAAAAGTTAATTCACTAACGCATATGT 128 consensus_4889#2 TTAAACGATACAAGACAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCG 112 *** * **** ** ** * ** **** ** **** * * * *** * * consensus_4889#0 TAACTGATGATAATAGCGC-GTTTGAGTTGCTTTGAGTA-GCAAACGT-TGTAGAGCAAA 476 consensus_4889#1 TAACTGATGATAATAGCGC-GTTTGAGTTGCTTTGAGTA-GCAAACGT-TGTAGAGCAAA 185 consensus_4889#2 AAACCGTACATG-TAGTGTAGTGCAAACCCGTGCGTGTGTGTGTGTGTGTGTGTNGTAGG 171 *** * ** *** * ** * * * ** * ** *** * * consensus_4889#0 CAAACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTT 536 consensus_4889#1 CATACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTT 245 consensus_4889#2 GGTTAGTNCGTCA-CGNNTGTGTGTNGCNCTGTTCG-TTCGTGTCGCNGTCATTCA---- 225 * ** * ** **** * ** ** * * consensus_4889#0 GTTGTTGTAATGTTTTCGGGATTTGAAGAGGTAGTTAAAAACGAAATTCGACTAAAACAA 596 consensus_4889#1 GTTGTTGTAATGTTTTCGGAATTTGAAGAGGTAGTTAAAAACAAAATTCGACAAAAACAA 305 consensus_4889#2 ------------------------------------------------------------ consensus_4889#0 TATACATATTCAGCCTAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACAC 656 consensus_4889#1 TATACATATTCAGCATAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACAC 365 consensus_4889#2 ------------------------------------------------------------ consensus_4889#0 GGCAGATCAAAACAAAAA-GCAGCAAACGCAAGATGTAATCAAGATACATATATCTACGT 715 consensus_4889#1 GGCAGATCAAAACAAAAAAGCAGCAAACGCAAGATGTAATCACGATACATATATCTACGT 425 consensus_4889#2 ------------------------------------------------------------ consensus_4889#0 TAAACGTCCGTTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGAAATCCCATATTT 775 consensus_4889#1 TAAACGTCCGTTTTTTTT-CTTCATCGCTTCAGTCACTCTTATGTTGTAATCCCATATTT 484 consensus_4889#2 ------------------------------------------------------------ consensus_4889#0 TAATGCAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTAAGCG 835 consensus_4889#1 TAATGCAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTAAGCG 544 consensus_4889#2 ------------------------------------------------------------ consensus_4889#0 -AACATCGCAGACATGTAAGACATACATACCTACATACAAAACACATTAAAAAAGAAGAG 894 consensus_4889#1 GAACAT------------------------------------------------------ 550 consensus_4889#2 ------------------------------------------------------------ consensus_4889#0 AACAAACAACACACACCGCGAAAAATAAGAGAAAATATAGTGAATTTA 942 consensus_4889#1 ------------------------------------------------ consensus_4889#2 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||