cluster # 4889

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Anopheles gambiae
cluster # 4889 cluster # 4889 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4889#0 length = 942 sequences # 2

consensus_4889#1 length = 550 sequences # 1
consensus_4889#2 length = 225 sequences # 1

consensusID : consensus_4889#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 942
fasta sequence

                              [AATGCGATTTTAGGGAAGAACATTGCTATAGCCATCGGAATATATATTAGTTAATACACGTTTTAAGTATAGACTCTCCTACACCTCCACAGCGTTTCACACCAGTTGGAGATGTGGGCGAGTGCGTACACAAAAAGAATCGTATTAAGTGGGTAGTATAAGTTATTAAACGATACAAGACAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCGAAACCGTACATCTAGTGTAGTGCAAACCCGTGCGTGTGTGTGTGTTTGTAGGGATAGTCGTCAGCTGTGTGTGCCTGTCGTCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAATTACCCCTTACAGGAAAAGAAAATAATTCTAGCAAAAGTTAATTCACTAACGCATATGTTAACTGATGATAATAGCGCGTTTGAGTTGCTTTGAGTAGCAAACGTTGTAGAGCAAACAAACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTTGTTGTTGTAATGTTTTCGGGATTTGAAGAGGTAGTTAAAAACGAAATTCGACTAAAACAATATACATATTCAGCCTAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACACGGCAGATCAAAACAAAAAGCAGCAAACGCAAGATGTAATCAAGATACATATATCTACGTTAAACGTCCGTTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGAAATCCCATATTTTAATGCAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTAAGCGAACATCGCAGACATGTAAGACATACATACCTACATACAAAACACATTAAAAAAGAAGAGAACAAACAACACACACCGCGAAAAATAAGAGAAAATATAGTGAATTTA]

[+] EMBL BX608669             [AATGCGATTTTAGGGAAGAACATTGCTATAGCCATCGGAATATATATTAGTTAATACACGTTTTAAGTATAGACTCTCCTACACCTCCACAGCGTTTCACACCAGTTGGAGATGTGGGCGAGTGCGTACACAAAAAGAATCGTATTAAGTGGGTAGTATAAGTTATTAAACGATACAAGACAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCGAAACCGTACATCTAGTGTAGTGCAAACCCGTGCGTGTGTGTGTGTTTGTAGGGATAGTCGTCAGCTGTGTGTGCCTGTCGTCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAATTACCCCTTACAGGAAAAGAAAATAATTCTAGCAAAAGTTAATTCACTAACGCATATGTTAACTGATGATAATAGCGCGTTTGAGTTGCTTTGAGTAGCAAACGTTGTAGAGCAAACAAACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTTGTTGTTGTAATGTTTTCGGGATTTGAAGAGGTAGTTAAAAACGAAATTCGACTAAAACAATATACATATTCAGCCTAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACACGGCAGATCAAAACAAAAAGCAGCAAACGCAAGATGTAATCAAGATACATATATCTACGTTAAACGTCCGTTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGAAATCCCATATTTTAATGCAAAATCG                                                                                                                                                          ]
[+] EMBL BX615579             [                                                                                                                                                                                                                                                                                                GCTGTGTGTGCCTGTCGTCGTGTGCGCTTTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAATTACCCCTTACAGGAAAAGAAAATAATTCTAGCAAAAGTTAATTCACTAACGCATATGTTAACTGATGATAATAGCGCGTTTGAGTTGCTTTGAGTAGCAAACGTTGTAGAGCAAACAAACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTTGTTGTTGTAATGTTTTCGGGATTTGAAGAGGTAGTTAAAAACGAAATTCGACTAAAACAATATACATATTCAGCCTAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACACGGCAGATCAAAACAAAAAGCAGCAAACGCAAGATGTAATCAAGATACATATATCTACGTTAAACGTCCGTTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGAAATCCCATATTTTAATGCAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTAAGCGAACATCGCAGACATGTAAGACATACATACCTACATACAAAACACATTAAAAAAGAAGAGAACAAACAACACACACCGCGAAAAATAAGAGAAAATATAGTGAATTTA]




>consensus_4889#0
AATGCGATTTTAGGGAAGAACATTGCTATAGCCATCGGAATATATATTAGTTAATACACG
TTTTAAGTATAGACTCTCCTACACCTCCACAGCGTTTCACACCAGTTGGAGATGTGGGCG
AGTGCGTACACAAAAAGAATCGTATTAAGTGGGTAGTATAAGTTATTAAACGATACAAGA
CAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCGAAACCGTACATCTAG
TGTAGTGCAAACCCGTGCGTGTGTGTGTGTTTGTAGGGATAGTCGTCAGCTGTGTGTGCC
TGTCGTCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAA
TTACCCCTTACAGGAAAAGAAAATAATTCTAGCAAAAGTTAATTCACTAACGCATATGTT
AACTGATGATAATAGCGCGTTTGAGTTGCTTTGAGTAGCAAACGTTGTAGAGCAAACAAA
CCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTTGTTG
TTGTAATGTTTTCGGGATTTGAAGAGGTAGTTAAAAACGAAATTCGACTAAAACAATATA
CATATTCAGCCTAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACACGGCA
GATCAAAACAAAAAGCAGCAAACGCAAGATGTAATCAAGATACATATATCTACGTTAAAC
GTCCGTTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGAAATCCCATATTTTAATG
CAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTAAGCGAACAT
CGCAGACATGTAAGACATACATACCTACATACAAAACACATTAAAAAAGAAGAGAACAAA
CAACACACACCGCGAAAAATAAGAGAAAATATAGTGAATTTA

consensusID : consensus_4889#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [CCGCGGACGCGTGGGCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAATTACCCCTTACAGGAAAAGAAAATAATTCTAGCAAAAGTTAATTCACTAACGCATATGTTAACTGATGATAATAGCGCGTTTGAGTTGCTTTGAGTAGCAAACGTTGTAGAGCAAACATACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTTGTTGTTGTAATGTTTTCGGAATTTGAAGAGGTAGTTAAAAACAAAATTCGACAAAAACAATATACATATTCAGCATAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACACGGCAGATCAAAACAAAAAAGCAGCAAACGCAAGATGTAATCACGATACATATATCTACGTTAAACGTCCGTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGTAATCCCATATTTTAATGCAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTAAGCGGAACAT]

[+] EMBL BM592627             [CCGCGGACGCGTGGGCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAATTACCCCTTACAGGAAAAGAAAATAATTCTAGCAAAAGTTAATTCACTAACGCATATGTTAACTGATGATAATAGCGCGTTTGAGTTGCTTTGAGTAGCAAACGTTGTAGAGCAAACATACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTTGTTGTTGTAATGTTTTCGGAATTTGAAGAGGTAGTTAAAAACAAAATTCGACAAAAACAATATACATATTCAGCATAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACACGGCAGATCAAAACAAAAAAGCAGCAAACGCAAGATGTAATCACGATACATATATCTACGTTAAACGTCCGTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGTAATCCCATATTTTAATGCAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTAAGCGGAACAT]




>consensus_4889#1
CCGCGGACGCGTGGGCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACA
GGAGCTAAATTACCCCTTACAGGAAAAGAAAATAATTCTAGCAAAAGTTAATTCACTAAC
GCATATGTTAACTGATGATAATAGCGCGTTTGAGTTGCTTTGAGTAGCAAACGTTGTAGA
GCAAACATACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGAT
TTTTTGTTGTTGTAATGTTTTCGGAATTTGAAGAGGTAGTTAAAAACAAAATTCGACAAA
AACAATATACATATTCAGCATAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAA
AACACGGCAGATCAAAACAAAAAAGCAGCAAACGCAAGATGTAATCACGATACATATATC
TACGTTAAACGTCCGTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGTAATCCCAT
ATTTTAATGCAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTA
AGCGGAACAT

consensusID : consensus_4889#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [GTGGGCGAGTGCGTACACAAAAAGAATCGTATTAAGTGGGTAGTATAAGTTATTAAACGATACAAGACAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCGAAACCGTACATGTAGTGTAGTGCAAACCCGTGCGTGTGTGTGTGTGTGTGTGTNGTAGGGGTTAGTNCGTCACGNNTGTGTGTNGCNCTGTTCGTTCGTGTCGCNGTCATTCA]

[+] EMBL CF541493             [GTGGGCGAGTGCGTACACAAAAAGAATCGTATTAAGTGGGTAGTATAAGTTATTAAACGATACAAGACAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCGAAACCGTACATGTAGTGTAGTGCAAACCCGTGCGTGTGTGTGTGTGTGTGTGTNGTAGGGGTTAGTNCGTCACGNNTGTGTGTNGCNCTGTTCGTTCGTGTCGCNGTCATTCA]




>consensus_4889#2
GTGGGCGAGTGCGTACACAAAAAGAATCGTATTAAGTGGGTAGTATAAGTTATTAAACGA
TACAAGACAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCGAAACCGTA
CATGTAGTGTAGTGCAAACCCGTGCGTGTGTGTGTGTGTGTGTGTNGTAGGGGTTAGTNC
GTCACGNNTGTGTGTNGCNCTGTTCGTTCGTGTCGCNGTCATTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4889#0      AATGCGATTTTAGGGAAGAACATTGCTATAGCCATCGGAATATATATTAGTTAATACACG 60
consensus_4889#1      ------------------------------------------------------------
consensus_4889#2      ------------------------------------------------------------
                                                                                  

consensus_4889#0      TTTTAAGTATAGACTCTCCTACACCTCCACAGCGTTTCACACCAGTTGGAGATGTGGGCG 120
consensus_4889#1      ------------------------------------------------------------
consensus_4889#2      ------------------------------------------------------------
                                                                                  

consensus_4889#0      AGTGCGTACACAAAAAGAATCGTATTAAGTGGGTAGTATAAGTTATTAAACGATACAAGA 180
consensus_4889#1      ------------------------------------------------------------
consensus_4889#2      ------------------------------------------------------------
                                                                                  

consensus_4889#0      CAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCGAAACCGTACATCTAG 240
consensus_4889#1      ------------------------------------------------------------
consensus_4889#2      ------------------------------------------------------------
                                                                                  

consensus_4889#0      TGTAGTGCAAACCCGTGCGTGTGTGTGTGTTTGTAGGGATAGTCGTCAGCTGTGTGTGCC 300
consensus_4889#1      ---------------------------------------------------CCGCGGACG 9
consensus_4889#2      ------------------------------------------------------------
                                                                                  

consensus_4889#0      TGTCGTCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAA 360
consensus_4889#1      CGTGGGCGTGTGCGCATTTCATAATTGCTGTGTTAAGGATAATTAACAACAGGAGCTAAA 69
consensus_4889#2      -GTGGGCGAGTGCGTACACAAAAAGAATCGTATTAAG-----TGGGTAGTATAAGTT--A 52
                       ** * ** ***** *    * **     ** *****     *    *  *  ** *  *

consensus_4889#0      TTACCCCTTACAGGAAAAGAAAATAATTCTA-GCAAAAGTTAATTCACTAACGCATATGT 419
consensus_4889#1      TTACCCCTTACAGGAAAAGAAAATAATTCTA-GCAAAAGTTAATTCACTAACGCATATGT 128
consensus_4889#2      TTAAACGATACAAGACAACACAACAATTGTACGCAACAACGGCATAAAGAACTGTTTTCG 112
                      ***  *  **** ** ** * ** **** ** **** *      * *  ***   * *  

consensus_4889#0      TAACTGATGATAATAGCGC-GTTTGAGTTGCTTTGAGTA-GCAAACGT-TGTAGAGCAAA 476
consensus_4889#1      TAACTGATGATAATAGCGC-GTTTGAGTTGCTTTGAGTA-GCAAACGT-TGTAGAGCAAA 185
consensus_4889#2      AAACCGTACATG-TAGTGTAGTGCAAACCCGTGCGTGTGTGTGTGTGTGTGTGTNGTAGG 171
                       *** *   **  *** *  **   *     *  * **  *     ** ***   * *  

consensus_4889#0      CAAACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTT 536
consensus_4889#1      CATACCAACAGCATCCACCACAAAAAGCCTTGTTTGGTTAAGAAAGCTGAAAGATTTTTT 245
consensus_4889#2      GGTTAGTNCGTCA-CGNNTGTGTGTNGCNCTGTTCG-TTCGTGTCGCNGTCATTCA---- 225
                              *  ** *           **  **** * **      ** *  *        

consensus_4889#0      GTTGTTGTAATGTTTTCGGGATTTGAAGAGGTAGTTAAAAACGAAATTCGACTAAAACAA 596
consensus_4889#1      GTTGTTGTAATGTTTTCGGAATTTGAAGAGGTAGTTAAAAACAAAATTCGACAAAAACAA 305
consensus_4889#2      ------------------------------------------------------------
                                                                                  

consensus_4889#0      TATACATATTCAGCCTAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACAC 656
consensus_4889#1      TATACATATTCAGCATAAACATAGGAATTATGCAGTGAGAGATGTAAACAAGGAAAACAC 365
consensus_4889#2      ------------------------------------------------------------
                                                                                  

consensus_4889#0      GGCAGATCAAAACAAAAA-GCAGCAAACGCAAGATGTAATCAAGATACATATATCTACGT 715
consensus_4889#1      GGCAGATCAAAACAAAAAAGCAGCAAACGCAAGATGTAATCACGATACATATATCTACGT 425
consensus_4889#2      ------------------------------------------------------------
                                                                                  

consensus_4889#0      TAAACGTCCGTTTTTTTTTCTTCATCGCTTCAGTCACTCTTATGTTGAAATCCCATATTT 775
consensus_4889#1      TAAACGTCCGTTTTTTTT-CTTCATCGCTTCAGTCACTCTTATGTTGTAATCCCATATTT 484
consensus_4889#2      ------------------------------------------------------------
                                                                                  

consensus_4889#0      TAATGCAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTAAGCG 835
consensus_4889#1      TAATGCAAAATCGATTGTAAAGTGTGAAACAGTAGTGCAAACAGAGGTAAGAAGTAAGCG 544
consensus_4889#2      ------------------------------------------------------------
                                                                                  

consensus_4889#0      -AACATCGCAGACATGTAAGACATACATACCTACATACAAAACACATTAAAAAAGAAGAG 894
consensus_4889#1      GAACAT------------------------------------------------------ 550
consensus_4889#2      ------------------------------------------------------------
                                                                                  

consensus_4889#0      AACAAACAACACACACCGCGAAAAATAAGAGAAAATATAGTGAATTTA 942
consensus_4889#1      ------------------------------------------------
consensus_4889#2      ------------------------------------------------