cluster # 4890

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4890 cluster # 4890 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4890#0 length = 374 sequences # 3

consensus_4890#1 length = 135 sequences # 1

consensusID : consensus_4890#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 374
fasta sequence

                              [AATGCTGTCTACTACCGGCAGTATGTGGCTTAAAGGAGGAACTTTTAGGTAGGCCTGTTGGTTGGTTTCGATGCGTAAGACATACATGTAATCATCTCCCTTTTAGTAATGCTGTCTAGAATCCGGTACGCTGCTCGAATCTCGCCCGCGGTCCACGGCACTGCACACGAGCGTTTGCTATTTGGACGTGCTTTTATCGTGTATCGTGCATGATATCGATATTTATCCGTTTATCTTATTCAATCTAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCGAATANCGTACACCTTTNATGCGCTANTGTACGGAAGCGTAGTAGAGANATAANCCTTCTANCNNACNTATNCNAAAAAAAAAA]

[+] EMBL CF541657             [AATGCTGTCTACTACCGGCAGTATGTGGCTTAAAGGAGGAACTTTTAGGTAGGCCTGTTGGTTGGTTTCGATGCGTAAGACATACATGTAATCATCTCCCTTTTAGTAATGCTGTCTAGAATCCGGTACGCTGCTCGAATCTCGCCCGCGGTCCACGGCACTGCACACGAGCGTTTGCTATTTGGACGTGCTTTTATCGTGTATCGTGCATGATATCGATATTTATCCGTTTATCTTATTCAATCTAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCGAATANCGTACACCTTTNATGCGCTANTGTACGGAAGCGTAGTAGAGANATAANCCTTCTANCNNACNTATNCNAAAAAAAAAA]
[-] EMBL AGA282770            [ ATGCTGTCTACTACCGGCAGTATGTGGCTTAAAGGAGGAACTTTTAGGTAGGCCTGTTGGTTGGTTTCGATGCGTAAGACATACATGTAATCATCT CCTTTTAGTAATGCAGTCTAGATTCCGGTACGCTGCTCGAATCTCGCCCGCGGTCCACGGCACTGCACACGAGCGTTTGCTATTGGGACGTGCTTTTATCGTGTATCGTGCATGATATCGATATTTATCCGTTTATCTTATTCAATCTAATCGAACCGTGTCGGTAAAGGGAGCAttct                                                                                                 ]
[-] EMBL CNS09DH9             [ ATGCTGTCTACTACCGGCAGTATGTGGCTTAAAGGAGGAACTTTTAGGTAGGCCTGTTGGTTGGTTTCGATGCG                                                                                                                                                                                                                                                                                                           ]




>consensus_4890#0
AATGCTGTCTACTACCGGCAGTATGTGGCTTAAAGGAGGAACTTTTAGGTAGGCCTGTTG
GTTGGTTTCGATGCGTAAGACATACATGTAATCATCTCCCTTTTAGTAATGCTGTCTAGA
ATCCGGTACGCTGCTCGAATCTCGCCCGCGGTCCACGGCACTGCACACGAGCGTTTGCTA
TTTGGACGTGCTTTTATCGTGTATCGTGCATGATATCGATATTTATCCGTTTATCTTATT
CAATCTAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCGAATANCGTA
CACCTTTNATGCGCTANTGTACGGAAGCGTAGTAGAGANATAANCCTTCTANCNNACNTA
TNCNAAAAAAAAAA

consensusID : consensus_4890#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 135
fasta sequence

                              [CCGCCCACGCGTCCGAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCGAATAACGTACACCTTTTATGCGCTAATGTACGGAAGCGTAGTAGAGAAATAAACCTTCCTACCTTACCTTATCTT]

[+] EMBL BM586806             [CCGCCCACGCGTCCGAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCGAATAACGTACACCTTTTATGCGCTAATGTACGGAAGCGTAGTAGAGAAATAAACCTTCCTACCTTACCTTATCTT]




>consensus_4890#1
CCGCCCACGCGTCCGAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCG
AATAACGTACACCTTTTATGCGCTAATGTACGGAAGCGTAGTAGAGAAATAAACCTTCCT
ACCTTACCTTATCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4890#0      AATGCTGTCTACTACCGGCAGTATGTGGCTTAAAGGAGGAACTTTTAGGTAGGCCTGTTG 60
consensus_4890#1      ------------------------------------------------------------
                                                                                  

consensus_4890#0      GTTGGTTTCGATGCGTAAGACATACATGTAATCATCTCCCTTTTAGTAATGCTGTCTAGA 120
consensus_4890#1      ------------------------------------------------------------
                                                                                  

consensus_4890#0      ATCCGGTACGCTGCTCGAATCTCGCCCGCGGTCCACGGCACTGCACACGAGCGTTTGCTA 180
consensus_4890#1      ------------------------------------------------------------
                                                                                  

consensus_4890#0      TTTGGACGTGCTTTTATCGTGTATCGTGCATGATATCGATATTTATCCGTTTATCTTATT 240
consensus_4890#1      ---------------------------------------------------CCGCCCACG 9
                                                                            *  *  

consensus_4890#0      CAATCTAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCGAATANCGTA 300
consensus_4890#1      CGTCCGAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCGAATAACGTA 69
                      *   * ************************************************* ****

consensus_4890#0      CACCTTTNATGCGCTANTGTACGGAAGCGTAGTAGAGANATAANCCTTC-TANCNNACNT 359
consensus_4890#1      CACCTTTTATGCGCTAATGTACGGAAGCGTAGTAGAGAAATAAACCTTCCTACCTTACCT 129
                      ******* ******** ********************* **** ***** ** *  ** *

consensus_4890#0      ATNCNAAAAAAAAAA 374
consensus_4890#1      TATCTT--------- 135
                         *