cluster # 4892

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Anopheles gambiae
cluster # 4892 cluster # 4892 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4892#0 length = 365 sequences # 1

consensus_4892#1 length = 295 sequences # 2
consensus_4892#2 length = 167 sequences # 1

consensusID : consensus_4892#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [CTTGAGCTGTGACCGGCAGCAGTTAATCTCAGTACTCGCTATTCGCTGGTGCTACCTCTGCAATCTACCCCAAATACGGCTAATCAATAGCAGGCCCCTTATCACAACGGGTTGATACAATATCTGTACCCTGGCCGTGTATACTTAGCACGTAGATTAGTCAAGGTAAATCCCAAATACCTAGCTACCTTTGTGTTATCTAGTCCGCATACTTCACCGTCAACTATAATTGCCTCGAACAATCAATTCAGAGGGTTGTTTCGGTGTGTTTGGTATGTGTGGCTGTGTGTCTCCCGGACGTAGTTGAATGGTGCTATNNGATGAGGCAATGCTTCGATGTACGGGCATGACTTCATGGCTGGAGC]

[+] EMBL CF542070             [CTTGAGCTGTGACCGGCAGCAGTTAATCTCAGTACTCGCTATTCGCTGGTGCTACCTCTGCAATCTACCCCAAATACGGCTAATCAATAGCAGGCCCCTTATCACAACGGGTTGATACAATATCTGTACCCTGGCCGTGTATACTTAGCACGTAGATTAGTCAAGGTAAATCCCAAATACCTAGCTACCTTTGTGTTATCTAGTCCGCATACTTCACCGTCAACTATAATTGCCTCGAACAATCAATTCAGAGGGTTGTTTCGGTGTGTTTGGTATGTGTGGCTGTGTGTCTCCCGGACGTAGTTGAATGGTGCTATNNGATGAGGCAATGCTTCGATGTACGGGCATGACTTCATGGCTGGAGC]




>consensus_4892#0
CTTGAGCTGTGACCGGCAGCAGTTAATCTCAGTACTCGCTATTCGCTGGTGCTACCTCTG
CAATCTACCCCAAATACGGCTAATCAATAGCAGGCCCCTTATCACAACGGGTTGATACAA
TATCTGTACCCTGGCCGTGTATACTTAGCACGTAGATTAGTCAAGGTAAATCCCAAATAC
CTAGCTACCTTTGTGTTATCTAGTCCGCATACTTCACCGTCAACTATAATTGCCTCGAAC
AATCAATTCAGAGGGTTGTTTCGGTGTGTTTGGTATGTGTGGCTGTGTGTCTCCCGGACG
TAGTTGAATGGTGCTATNNGATGAGGCAATGCTTCGATGTACGGGCATGACTTCATGGCT
GGAGC

consensusID : consensus_4892#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 295
fasta sequence

                              [AGCCCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAAAAGCAAACACATGTCCTTCACAGATAGTGATGTGAAAGTTTCGTTCCATTTTTTTATTGTAGTTTTTTGCGAGCAGAACCAAACACGCCACAACACAATGCCCTATTCTTAAACGAATAATTGTCATAAGCTCCAGCCACGAGTCATGCCCGTTCGTGGAAGCATTGCCTCATCAATAGCACCATTCAACAACGTCCGGGAGACACACAGCCACACATACCAAACACACTGAAACAACCGTCTG]

[-] EMBL CNS08WJX             [AGCCCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAAAAGCAAACACATGTCCTTCACAGATAGTGATGTGAAAGTTTCGTTCCATTTTTTTATTGTAGTTTTTTGCGAGCAGAACCAAACACGCCACAACACAATGCCCTATTCTTAAACGAATAATTGTCATAAGCTCCAGCCACGAGTCATGCCCGTTCGTGGAAGCATTGCCTCATCAATAGCACCATTCAACAACGTCCGGGAGACACACAGCCACACATACCAAACACACTGAAACAACCGTCTG]
[+] EMBL CNS08WJY             [                                                                         GATAGTGATGTGAAAGTTTCGTTCCATTTTTTTATTGTAGTTTTTTGCGAGCAGAACCAAACACGCCACAACACAATGCCCTATTCTTAAACGAATAATTGTCATAAGCCCCAGCCACGAGTAAT                                                                                                 ]




>consensus_4892#1
AGCCCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAAAAGCAAACA
CATGTCCTTCACAGATAGTGATGTGAAAGTTTCGTTCCATTTTTTTATTGTAGTTTTTTG
CGAGCAGAACCAAACACGCCACAACACAATGCCCTATTCTTAAACGAATAATTGTCATAA
GCTCCAGCCACGAGTCATGCCCGTTCGTGGAAGCATTGCCTCATCAATAGCACCATTCAA
CAACGTCCGGGAGACACACAGCCACACATACCAAACACACTGAAACAACCGTCTG

consensusID : consensus_4892#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 167
fasta sequence

                              [GCAATGCTTCGATGTACGGGNCATGACTCGNTGGCTGGAGNCTTATGACAATTATTCGTTTAAGAATAGGGCATTGTGTTGTGTCGTGTTTGGTTCTGCTCGCAAAAAACTACAATAAAAAAATGGAACGAAACNTTTCACATNCACTNATNCTNGCAAAAAAAAAA]

[+] EMBL CF541824             [GCAATGCTTCGATGTACGGGNCATGACTCGNTGGCTGGAGNCTTATGACAATTATTCGTTTAAGAATAGGGCATTGTGTTGTGTCGTGTTTGGTTCTGCTCGCAAAAAACTACAATAAAAAAATGGAACGAAACNTTTCACATNCACTNATNCTNGCAAAAAAAAAA]




>consensus_4892#2
GCAATGCTTCGATGTACGGGNCATGACTCGNTGGCTGGAGNCTTATGACAATTATTCGTT
TAAGAATAGGGCATTGTGTTGTGTCGTGTTTGGTTCTGCTCGCAAAAAACTACAATAAAA
AAATGGAACGAAACNTTTCACATNCACTNATNCTNGCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4892#0      CTTGAGCTGTGACCGGCAGCAGTTAATCTCAGTACTCGCTATTCGCTGGTGCTACCTCTG 60
consensus_4892#2      ------------------------------------------------------------
consensus_4892#1      ------------------------------------------------------------
                                                                                  

consensus_4892#0      CAATCTACCCCAAATACGGCTAATCAATAGCAGGCCCCTTATCACAACGGGTTGATACAA 120
consensus_4892#2      ------------------------------------------------------------
consensus_4892#1      -----------------AGCCCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTTTTT 43
                                                                                  

consensus_4892#0      TATCTGTACCCTGGCCGTGTATACTTAGCACGTAGATTAGTCAAGGTAAATCCCAAATAC 180
consensus_4892#2      ------------------------------------------------------------
consensus_4892#1      TTTGTTAAAAGCAAACACATGTCCTTCACAGATAGTGATGTGAAAGTTTCGTTCCATTTT 103
                                                                                  

consensus_4892#0      CTAGCTACCTTTGTGTTAT----CTAGTCCGCATACTTCACCGTCAACTATAATTGC--C 234
consensus_4892#2      ------GCAATGCTTCGAT----GTACGGGNCATGACTCGNTGGCTGG-AGNCTTAT--G 47
consensus_4892#1      TTTATTGTAGTTTTTTGCGAGCAGAACCAAACACGCCACAACACAATGCCCTATTCTTAA 163
                                *  *           *     **     *              **     

consensus_4892#0      TCGAACAATCAATTCAGAGGGTTGTTTCGGTGTGTTTGGTATGTGTGGCTGTGTGTCTCC 294
consensus_4892#2      ACAATTATTCGTTTAAGAATAGGGCATTG-TGT-TGTGTCGTGTTTGGTTCTG---CTCG 102
consensus_4892#1      ACGAATAATTGTCATAAGCTCCAGCCACG-AGTCATGCCCGTTCGTGGAAGCAT-TGCCT 221
                       * *  * *      *       *    *  **        *   ***          * 

consensus_4892#0      CGGACGTAGTTGAATGGTGCTATNNGATGAGGCAATGCTTCGATGTACGGGCATGACTTC 354
consensus_4892#2      CAAA-AAACTACAATAAAAAAATGGAACGAAACN----TTTCACATNCACTNATNCTNGC 157
consensus_4892#1      CATCAATAGCACCATTCAACAACGTCCGGGAGACACACAGCCACACATACCAAACACACT 281
                      *      *     **      *      *             *         *       

consensus_4892#0      ATGGCTGGAGC--- 365
consensus_4892#2      AAAAAAAAAA---- 167
consensus_4892#1      GAAACAACCGTCTG 295