cluster # 4893

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Anopheles gambiae
cluster # 4893 cluster # 4893 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4893#0 length = 856 sequences # 3

consensus_4893#1 length = 668 sequences # 1

consensusID : consensus_4893#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 856
fasta sequence

                              [CCGCGTAATCGTCACAAGTGAAATTCATTGCTCGGGCAAAAAAGAAA-ATTGTGATCTCTCGCCAGACAAACTTGCCCACTTTCTGTTTGTGTTTTGTTCCTAGCCCTAGCCCAGACTGCTTCATTGTTAAAAGTGCTTCTATCCCTCGAGCTCAGTGCATCCGAATAGTAGTATGTCGCACCAAACTGGCATCAAGGCAAACGCCGAGCTTCTGAAGTTCTTTGGCAAATGCAAAGATGGAAAGACCCGGGTTCTGAAAGTTTCTATTGAAAATGAGGAGCTAAGACTGGTAAGCCACAGTGATGTGAAGCGAGACTGGGAGAAAGACTACGATACGTTGGTGAGACCGCTGATCGAGGAGAGCACGCCGTGCTACATTCTTTACAGATTGGACTACAAAATCCCCACCGGGTACGCATGGCTGCTGATGAGCTGGGTGCCGGAATCGGCCACCGTGCGACAGAAAATGCTGTATGCTTCGACGAAGGCGACGCTCAAGCTGGAGTTCGGCTCGGGCCACATCAAGGAGGAGCTGAACGCGACGTCCAAGGAGGAGACGACGCTGCAGGGCTACCAGAAGCACAAGGTGGACTTTAACACGCCCGCTCCGCTGACCAGCCGGGAGGAGGAGCTGGCCGAGCTACGCAAAACCGANGTGAGGACAGATTTCGGCATCGACACCAAGCAGCAGACGCTCGGCGGCATCANCTGTNCGATCGCGGACGCGGTCGCCCAGCGCTGCACGATATGCGCCGCGGCGGCTACNACTATCTGCAGTNCGCATCNATTCGANGANGAAAGATCNCNNGNTGAGGCNGACACTNANCNACNGCNGCGNCAANNCGACGACNNCGTA]

[+] EMBL BM577997             [CCGCGTAATCGTCACAAGTGAAATTCATTGCTCGGGCAAAAAAGAAA ATTGTGATCTCTCGCCAGACAAACTTGCCCACTTTCTGTTTGTGTTTTGTTCCTAGCCCTAGCCCAGACTGCTTCATTGTTAAAAGTGCTTCTATCCCTCGAGCTCAGTGCATCCGAATAGTAGTATGTCGCACCAAACTGGCATCAAGGCAAACGCCGAGCTTCTGAAGTTCTTTGGCAAATGCAAAGATGGAAAGACCCGGGTTCTGAAAGTTTCTATTGAAAATGAGGAGCTAAGACTGGTAAGCCACAGTGATGTGAAGCGAGACTGGGAGAAAGACTACGATACGTTGGTGAGACCGCTGATCGAGGAGAGCACGCCGTGCTACATTCTTTACAGATTGGACTACAAAATCCCCACCGGGTACGCATGGCTGCTGATGAGCTGGGTGCCGGAATCGGCCACCGTGCGACAGAAAATGCTGTATGCTTCGACGAAGGCGACGCTCAAGCTGGAGTTCGGCTCGGGCCACATCAAGGAGGAGCTGAACGCGACGT                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM585030             [                                     ccgAAAGAAAGATTGTGATCTCTCGCCAGACAAACTTGCCCACTTTCTGTTTGTGTTTTGTTCCTAGCCCTATGCCAGACTGCTTCATTGTTAAAAGTGCTTCTATCCCTCGAGCTCAGTGCATCCGAATAGTAGTATGTCGCACCAAACTGGCATCAAGGCAAACGCCGAGCTTCTGAAGTTCTTTGGCAAATGCAAAGATGGAAAGACCCGGGTTCTGAAAGTGTCTATTGAAAATGAGGAGCTAAGAGTGGTAAGCCACAGTGATGTGAAGCGAGACTGGGAGAAAGACTACGATACGTTGGTGAGACCGCTGATCGAGGAGAGCACGCCGTGCTACATTCTTTACAGATTGGACTACAAAATCCCCACCGGGTACGCATGGCTGCTGATGAGCTGGGTGCCGGAATCG                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF541857             [                                                              CCAGACAAACTTGCCCACTTTCTGTTTGTGTTTTGTTCCTAGCCCTAGCCCAGACTGCTTCATTGTTAAAAGTGCTTCTATCCCTCGAGCTCAGTGCATCCGAATAGTAGTATGTCGCACCAAACTGGCATCAAGGCAAACGCCGAGCTTCTGAAGTTCTTTGGCAAATGCAAAGATGGAAAGACCCGGGTTCTGAAAGTTTCTATTGAAAATGAGGAACTAAGACTGGTAAGCCACAGTGATGTGAAGCGAGACTGGGAGAAAGACTACGATACGTTGGTGAGACCGCTGATCGAGGAGAGCACGCCGTGCTACATTCTTTACAGATTGGACTACAAAATCCCCACCGGGTACGCATGGCTGCTGATGAGCTGGGTGCCGGAATCGGCCACCGTGCGACAGAAAATGCTGTATGCTTCGACGAAGGCGACGCTCAAGCTGGAGTTCGGCTCGGGCCACATCAAGGAGGAGCTGAACGCGACGTCCAAGGAGGAGACGACGCTGCAGGGCTACCAGAAGCACAAGGTGGACTTTAACACGCCCGCTCCGCTGACCAGCCGGGAGGAGGAGCTGGCCGAGCTACGCAAAACCGANGTGAGGACAGATTTCGGCATCGACACCAAGCAGCAGACGCTCGGCGGCATCANCTGTNCGATCGCGGACGCGGTCGCCCAGCGCTGCACGATATGCGCCGCGGCGGCTACNACTATCTGCAGTNCGCATCNATTCGANGANGAAAGATCNCNNGNTGAGGCNGACACTNANCNACNGCNGCGNCAANNCGACGACNNCGTA]




>consensus_4893#0
CCGCGTAATCGTCACAAGTGAAATTCATTGCTCGGGCAAAAAAGAAAATTGTGATCTCTC
GCCAGACAAACTTGCCCACTTTCTGTTTGTGTTTTGTTCCTAGCCCTAGCCCAGACTGCT
TCATTGTTAAAAGTGCTTCTATCCCTCGAGCTCAGTGCATCCGAATAGTAGTATGTCGCA
CCAAACTGGCATCAAGGCAAACGCCGAGCTTCTGAAGTTCTTTGGCAAATGCAAAGATGG
AAAGACCCGGGTTCTGAAAGTTTCTATTGAAAATGAGGAGCTAAGACTGGTAAGCCACAG
TGATGTGAAGCGAGACTGGGAGAAAGACTACGATACGTTGGTGAGACCGCTGATCGAGGA
GAGCACGCCGTGCTACATTCTTTACAGATTGGACTACAAAATCCCCACCGGGTACGCATG
GCTGCTGATGAGCTGGGTGCCGGAATCGGCCACCGTGCGACAGAAAATGCTGTATGCTTC
GACGAAGGCGACGCTCAAGCTGGAGTTCGGCTCGGGCCACATCAAGGAGGAGCTGAACGC
GACGTCCAAGGAGGAGACGACGCTGCAGGGCTACCAGAAGCACAAGGTGGACTTTAACAC
GCCCGCTCCGCTGACCAGCCGGGAGGAGGAGCTGGCCGAGCTACGCAAAACCGANGTGAG
GACAGATTTCGGCATCGACACCAAGCAGCAGACGCTCGGCGGCATCANCTGTNCGATCGC
GGACGCGGTCGCCCAGCGCTGCACGATATGCGCCGCGGCGGCTACNACTATCTGCAGTNC
GCATCNATTCGANGANGAAAGATCNCNNGNTGAGGCNGACACTNANCNACNGCNGCGNCA
ANNCGACGACNNCGTA

consensusID : consensus_4893#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 668
fasta sequence

                              [CCGGTTCTTTGGCAAATGCAAAGATGGAAAGACCCGGGTTCTGAAAGTTTCTATTGAAAATGAGGAGCTAAGACTGGTAAGCCACAGTGATGTGAAGCGAGACTGGGAGAAAGACTACGATACGTTGGTGAGACCGCTGATCGAGGAGAGCACGCCGTGCTACATTCTTTACAGATTGGACTACAAAATCCCCACCGGGTACGCATGGCTGCTGATGAGCTGGGTGCCGGAATCGGCCACCGTGCGACAGAAAATGCTGTATGCTTCGACGAAGGCGACGCTCAAGCTGGAGTTCGGCTCGGGCCACATCAAGGAGGAGCTGAACGCGACGTCCAAGGAGGAGACGACGCTGCAGGGCTACCAGAAGCACAAGGTGGACTTTAACACGCCCGCTCCGCTGACCAGCCGGGAGGAGGAGCTGGCCGAGCTACGCAAAACCGAGGTGAAGACAGATTTCGGCATCGACACCAAGCAGCAGACGCTCGGCGGCATCAACTGTCCGATCGCGGACGCGGTCGCCCAAGCGCTGCACGATGCGCCGCGGCGGCTACAACTATCTGCAGTTTCGCATCGATCTCGAGGAGGAAAAGATACACCTGGTGAAGGCGGACAACATCGAGCTGACCGGGCTGGCGGCCCAAATACCGACCGACCACGCCCGCTACCAT]

[+] EMBL BM617552             [CCGGTTCTTTGGCAAATGCAAAGATGGAAAGACCCGGGTTCTGAAAGTTTCTATTGAAAATGAGGAGCTAAGACTGGTAAGCCACAGTGATGTGAAGCGAGACTGGGAGAAAGACTACGATACGTTGGTGAGACCGCTGATCGAGGAGAGCACGCCGTGCTACATTCTTTACAGATTGGACTACAAAATCCCCACCGGGTACGCATGGCTGCTGATGAGCTGGGTGCCGGAATCGGCCACCGTGCGACAGAAAATGCTGTATGCTTCGACGAAGGCGACGCTCAAGCTGGAGTTCGGCTCGGGCCACATCAAGGAGGAGCTGAACGCGACGTCCAAGGAGGAGACGACGCTGCAGGGCTACCAGAAGCACAAGGTGGACTTTAACACGCCCGCTCCGCTGACCAGCCGGGAGGAGGAGCTGGCCGAGCTACGCAAAACCGAGGTGAAGACAGATTTCGGCATCGACACCAAGCAGCAGACGCTCGGCGGCATCAACTGTCCGATCGCGGACGCGGTCGCCCAAGCGCTGCACGATGCGCCGCGGCGGCTACAACTATCTGCAGTTTCGCATCGATCTCGAGGAGGAAAAGATACACCTGGTGAAGGCGGACAACATCGAGCTGACCGGGCTGGCGGCCCAAATACCGACCGACCACGCCCGCTACCAT]




>consensus_4893#1
CCGGTTCTTTGGCAAATGCAAAGATGGAAAGACCCGGGTTCTGAAAGTTTCTATTGAAAA
TGAGGAGCTAAGACTGGTAAGCCACAGTGATGTGAAGCGAGACTGGGAGAAAGACTACGA
TACGTTGGTGAGACCGCTGATCGAGGAGAGCACGCCGTGCTACATTCTTTACAGATTGGA
CTACAAAATCCCCACCGGGTACGCATGGCTGCTGATGAGCTGGGTGCCGGAATCGGCCAC
CGTGCGACAGAAAATGCTGTATGCTTCGACGAAGGCGACGCTCAAGCTGGAGTTCGGCTC
GGGCCACATCAAGGAGGAGCTGAACGCGACGTCCAAGGAGGAGACGACGCTGCAGGGCTA
CCAGAAGCACAAGGTGGACTTTAACACGCCCGCTCCGCTGACCAGCCGGGAGGAGGAGCT
GGCCGAGCTACGCAAAACCGAGGTGAAGACAGATTTCGGCATCGACACCAAGCAGCAGAC
GCTCGGCGGCATCAACTGTCCGATCGCGGACGCGGTCGCCCAAGCGCTGCACGATGCGCC
GCGGCGGCTACAACTATCTGCAGTTTCGCATCGATCTCGAGGAGGAAAAGATACACCTGG
TGAAGGCGGACAACATCGAGCTGACCGGGCTGGCGGCCCAAATACCGACCGACCACGCCC
GCTACCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4893#0      CCGCGTAATCGTCACAAGTGAAATTCATTGCTCGGGCAAAAAAGAAAATTGTGATCTCTC 60
consensus_4893#1      ------------------------------------------------------------
                                                                                  

consensus_4893#0      GCCAGACAAACTTGCCCACTTTCTGTTTGTGTTTTGTTCCTAGCCCTAGCCCAGACTGCT 120
consensus_4893#1      ------------------------------------------------------------
                                                                                  

consensus_4893#0      TCATTGTTAAAAGTGCTTCTATCCCTCGAGCTCAGTGCATCCGAATAGTAGTATGTCGCA 180
consensus_4893#1      ------------------------------------------------------------
                                                                                  

consensus_4893#0      CCAAACTGGCATCAAGGCAAACGCCGAGCTTCTGAAGTTCTTTGGCAAATGCAAAGATGG 240
consensus_4893#1      ---------------------------------CCGGTTCTTTGGCAAATGCAAAGATGG 27
                                                          ************************

consensus_4893#0      AAAGACCCGGGTTCTGAAAGTTTCTATTGAAAATGAGGAGCTAAGACTGGTAAGCCACAG 300
consensus_4893#1      AAAGACCCGGGTTCTGAAAGTTTCTATTGAAAATGAGGAGCTAAGACTGGTAAGCCACAG 87
                      ************************************************************

consensus_4893#0      TGATGTGAAGCGAGACTGGGAGAAAGACTACGATACGTTGGTGAGACCGCTGATCGAGGA 360
consensus_4893#1      TGATGTGAAGCGAGACTGGGAGAAAGACTACGATACGTTGGTGAGACCGCTGATCGAGGA 147
                      ************************************************************

consensus_4893#0      GAGCACGCCGTGCTACATTCTTTACAGATTGGACTACAAAATCCCCACCGGGTACGCATG 420
consensus_4893#1      GAGCACGCCGTGCTACATTCTTTACAGATTGGACTACAAAATCCCCACCGGGTACGCATG 207
                      ************************************************************

consensus_4893#0      GCTGCTGATGAGCTGGGTGCCGGAATCGGCCACCGTGCGACAGAAAATGCTGTATGCTTC 480
consensus_4893#1      GCTGCTGATGAGCTGGGTGCCGGAATCGGCCACCGTGCGACAGAAAATGCTGTATGCTTC 267
                      ************************************************************

consensus_4893#0      GACGAAGGCGACGCTCAAGCTGGAGTTCGGCTCGGGCCACATCAAGGAGGAGCTGAACGC 540
consensus_4893#1      GACGAAGGCGACGCTCAAGCTGGAGTTCGGCTCGGGCCACATCAAGGAGGAGCTGAACGC 327
                      ************************************************************

consensus_4893#0      GACGTCCAAGGAGGAGACGACGCTGCAGGGCTACCAGAAGCACAAGGTGGACTTTAACAC 600
consensus_4893#1      GACGTCCAAGGAGGAGACGACGCTGCAGGGCTACCAGAAGCACAAGGTGGACTTTAACAC 387
                      ************************************************************

consensus_4893#0      GCCCGCTCCGCTGACCAGCCGGGAGGAGGAGCTGGCCGAGCTACGCAAAACCGANGTGAG 660
consensus_4893#1      GCCCGCTCCGCTGACCAGCCGGGAGGAGGAGCTGGCCGAGCTACGCAAAACCGAGGTGAA 447
                      ****************************************************** **** 

consensus_4893#0      GACAGATTTCGGCATCGACACCAAGCAGCAGACGCTCGGCGGCATCANCTGTNCGATCGC 720
consensus_4893#1      GACAGATTTCGGCATCGACACCAAGCAGCAGACGCTCGGCGGCATCAACTGTCCGATCGC 507
                      *********************************************** **** *******

consensus_4893#0      GGACGCGGTCGCCCA-GCGCTGCACGATATGCGCCGCGGCGGCTACNACTATCTGCAGTN 779
consensus_4893#1      GGACGCGGTCGCCCAAGCGCTGCACGAT--GCGCCGCGGCGGCTACAACTATCTGCAGTT 565
                      *************** ************  **************** ************ 

consensus_4893#0      -CGCATCNAT-TCGANGANGAAA-GAT-CNCNNGNTGA-GGCNGACA----CTNANCNAC 830
consensus_4893#1      TCGCATCGATCTCGAGGAGGAAAAGATACACCTGGTGAAGGCGGACAACATCGAGCTGAC 625
                       ****** ** **** ** **** *** * *  * *** *** ****    *      **

consensus_4893#0      NGCNGCGNCAANNCGACGACNNCGTA----------------- 856
consensus_4893#1      CGGGCTGGCGGCCCAAATACCGACCGACCACGCCCGCTACCAT 668
                       *    * *    * *  **