cluster # 4898

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Anopheles gambiae
cluster # 4898 cluster # 4898 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4898#0 length = 708 sequences # 1
consensus_4898#1 length = 685 sequences # 1

consensus_4898#2 length = 381 sequences # 1
consensus_4898#3 length = 203 sequences # 1

consensusID : consensus_4898#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 708
fasta sequence

                              [ACACNCCCAGCTCAGCAGATCCCNGGTATTGACGTGTACGTGTCACGATCGTCCCCTTAAGACTGCACGATTGGTGGGACTTTGGGTGATCTGTAACCTCCCCTTCCCTCTGTGCAAAAGTGGCATGCTGCTGATACTAGCTGCCGTTAATCTCAAGACTTATAGTCATTCTTCTCGCAGCTAACACAAAAACAAAACCCATAACCCATCATCACCTGGCAGGGTGCGCCCAATGGTCGCACACGCACAGTGTGGTTTGGTTGTAACATCGCATCCTTGCACNAAACCGAACAGTGCCGAAAGCATGTTCCAGCCACATTGAANATANTTACTAAGTTCTATCACCCCCTACCCCACCCACACNTTACCAATACCCCCCCCAAAAACACAAATTGTCCGCCCCACACTCCCACCNACACTAACCCACTAACATTCCTGACAACCGTCCTNGCACAACTCACCAATCACGGAACANAACACANTGGNCNCCGGCGANNCTGATTGTACCTCCGNCNAACGCCGNTACACGCAACATACNACCAGCTTNNCACCCGNACCGGCATATGGTCGANGGCACGAATACAGTACNACATCTTGTANGGATAGGGCCAACAAANAAAAAATCCCAGTGAANCTACANATCAAACACAANCAATAAATAGTGATGTNAGGTTNGAAAAAGACGCAANAAACGAAGTANGCTGAATA]

[+] EMBL AL692928             [ACACNCCCAGCTCAGCAGATCCCNGGTATTGACGTGTACGTGTCACGATCGTCCCCTTAAGACTGCACGATTGGTGGGACTTTGGGTGATCTGTAACCTCCCCTTCCCTCTGTGCAAAAGTGGCATGCTGCTGATACTAGCTGCCGTTAATCTCAAGACTTATAGTCATTCTTCTCGCAGCTAACACAAAAACAAAACCCATAACCCATCATCACCTGGCAGGGTGCGCCCAATGGTCGCACACGCACAGTGTGGTTTGGTTGTAACATCGCATCCTTGCACNAAACCGAACAGTGCCGAAAGCATGTTCCAGCCACATTGAANATANTTACTAAGTTCTATCACCCCCTACCCCACCCACACNTTACCAATACCCCCCCCAAAAACACAAATTGTCCGCCCCACACTCCCACCNACACTAACCCACTAACATTCCTGACAACCGTCCTNGCACAACTCACCAATCACGGAACANAACACANTGGNCNCCGGCGANNCTGATTGTACCTCCGNCNAACGCCGNTACACGCAACATACNACCAGCTTNNCACCCGNACCGGCATATGGTCGANGGCACGAATACAGTACNACATCTTGTANGGATAGGGCCAACAAANAAAAAATCCCAGTGAANCTACANATCAAACACAANCAATAAATAGTGATGTNAGGTTNGAAAAAGACGCAANAAACGAAGTANGCTGAATA]




>consensus_4898#0
ACACNCCCAGCTCAGCAGATCCCNGGTATTGACGTGTACGTGTCACGATCGTCCCCTTAA
GACTGCACGATTGGTGGGACTTTGGGTGATCTGTAACCTCCCCTTCCCTCTGTGCAAAAG
TGGCATGCTGCTGATACTAGCTGCCGTTAATCTCAAGACTTATAGTCATTCTTCTCGCAG
CTAACACAAAAACAAAACCCATAACCCATCATCACCTGGCAGGGTGCGCCCAATGGTCGC
ACACGCACAGTGTGGTTTGGTTGTAACATCGCATCCTTGCACNAAACCGAACAGTGCCGA
AAGCATGTTCCAGCCACATTGAANATANTTACTAAGTTCTATCACCCCCTACCCCACCCA
CACNTTACCAATACCCCCCCCAAAAACACAAATTGTCCGCCCCACACTCCCACCNACACT
AACCCACTAACATTCCTGACAACCGTCCTNGCACAACTCACCAATCACGGAACANAACAC
ANTGGNCNCCGGCGANNCTGATTGTACCTCCGNCNAACGCCGNTACACGCAACATACNAC
CAGCTTNNCACCCGNACCGGCATATGGTCGANGGCACGAATACAGTACNACATCTTGTAN
GGATAGGGCCAACAAANAAAAAATCCCAGTGAANCTACANATCAAACACAANCAATAAAT
AGTGATGTNAGGTTNGAAAAAGACGCAANAAACGAAGTANGCTGAATA

consensusID : consensus_4898#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [TACGTGGATAAGGACCGGGAGGACAGCCGGGAGTACAAACCGGTCGCCCCGAAGGTGGAGCCGAAGAAGATGATCCGATACCGGGACAACAAGATCGTCTCGTTCAAGGGCGAACGGTACACGGAGGTGTCGCGCCGCGGCGGCGAGGAAGAGACTGAACTCAAAAAACCTAAGAAACCTATCTGTCCGTAACTAATGATACTCATCAGCCCCACACTCACTAGTTCATAGCGAAACGTTAAACGCTTCATCGAAGCTGCTGTAGTGCAACCAATCCCCGCTGGACGTGTAACGTGTTCCACGATCGCCCCCCTCAAAGACCGCCACGATTGGTGGGACTTTGGGTGATCGTAACCCTCCCCTTCCCTCTGTGCAAAAGGGCATGCTGCTGATACTAGCTGCCCGTTAATCTCAAGACTTATAGTCATTCTTCTCGCAGTAACACAAAAACAAAACCCATAACCCATCATCACCTGGCAGGGTGCGCCCAATGGTCGCACACGCACAGTGTGGTTGGTGTAACATCGATCTGACGAACCGAAAGGCGAAGAGTTCAGCAATGAGATAGTAGTAGTTTATCACCCCTCCCCACCCCCCTCACTCCCCCCCAGGAAATGTGGCAATTTTCAGCTACCTAATTTGAACGTATTTTATAGTTGTACAAAATGAGCGGATGTGTTCTCGT]

[+] EMBL BX623364             [TACGTGGATAAGGACCGGGAGGACAGCCGGGAGTACAAACCGGTCGCCCCGAAGGTGGAGCCGAAGAAGATGATCCGATACCGGGACAACAAGATCGTCTCGTTCAAGGGCGAACGGTACACGGAGGTGTCGCGCCGCGGCGGCGAGGAAGAGACTGAACTCAAAAAACCTAAGAAACCTATCTGTCCGTAACTAATGATACTCATCAGCCCCACACTCACTAGTTCATAGCGAAACGTTAAACGCTTCATCGAAGCTGCTGTAGTGCAACCAATCCCCGCTGGACGTGTAACGTGTTCCACGATCGCCCCCCTCAAAGACCGCCACGATTGGTGGGACTTTGGGTGATCGTAACCCTCCCCTTCCCTCTGTGCAAAAGGGCATGCTGCTGATACTAGCTGCCCGTTAATCTCAAGACTTATAGTCATTCTTCTCGCAGTAACACAAAAACAAAACCCATAACCCATCATCACCTGGCAGGGTGCGCCCAATGGTCGCACACGCACAGTGTGGTTGGTGTAACATCGATCTGACGAACCGAAAGGCGAAGAGTTCAGCAATGAGATAGTAGTAGTTTATCACCCCTCCCCACCCCCCTCACTCCCCCCCAGGAAATGTGGCAATTTTCAGCTACCTAATTTGAACGTATTTTATAGTTGTACAAAATGAGCGGATGTGTTCTCGT]




>consensus_4898#1
TACGTGGATAAGGACCGGGAGGACAGCCGGGAGTACAAACCGGTCGCCCCGAAGGTGGAG
CCGAAGAAGATGATCCGATACCGGGACAACAAGATCGTCTCGTTCAAGGGCGAACGGTAC
ACGGAGGTGTCGCGCCGCGGCGGCGAGGAAGAGACTGAACTCAAAAAACCTAAGAAACCT
ATCTGTCCGTAACTAATGATACTCATCAGCCCCACACTCACTAGTTCATAGCGAAACGTT
AAACGCTTCATCGAAGCTGCTGTAGTGCAACCAATCCCCGCTGGACGTGTAACGTGTTCC
ACGATCGCCCCCCTCAAAGACCGCCACGATTGGTGGGACTTTGGGTGATCGTAACCCTCC
CCTTCCCTCTGTGCAAAAGGGCATGCTGCTGATACTAGCTGCCCGTTAATCTCAAGACTT
ATAGTCATTCTTCTCGCAGTAACACAAAAACAAAACCCATAACCCATCATCACCTGGCAG
GGTGCGCCCAATGGTCGCACACGCACAGTGTGGTTGGTGTAACATCGATCTGACGAACCG
AAAGGCGAAGAGTTCAGCAATGAGATAGTAGTAGTTTATCACCCCTCCCCACCCCCCTCA
CTCCCCCCCAGGAAATGTGGCAATTTTCAGCTACCTAATTTGAACGTATTTTATAGTTGT
ACAAAATGAGCGGATGTGTTCTCGT

consensusID : consensus_4898#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [AGAATCNGCGCACGAGGTGTAACTCAAAAAACTAAGAAACCTATCTGTCCGTAACTAATGATACTCATCAGCCCCACACTCACTAGTTCATAGCGAAACGTTAAACGCTTCATCGAAGCTGCTGTAGTGCAACCAATCCCCGCTGGACGTGTAACGTGTTCCACGATCGCTCCACCTCAAAGACCGCCACGATTGGTGGGACTTTGGGTGATACGTAACCATCCACCCGCTGGNCCCTTACCCTCTGTGCAAAAGGGCATGCTGCTGATGCTAGCTGCCACGATTAAGTCTCAAGACTTATAGGTACATTCTATATCGGCAGTAACGACAAACACAAAACCCATAACCNTATACGATCGACCTGGATCGGGTGGCGCGCCA]

[+] EMBL BX466539             [AGAATCNGCGCACGAGGTGTAACTCAAAAAACTAAGAAACCTATCTGTCCGTAACTAATGATACTCATCAGCCCCACACTCACTAGTTCATAGCGAAACGTTAAACGCTTCATCGAAGCTGCTGTAGTGCAACCAATCCCCGCTGGACGTGTAACGTGTTCCACGATCGCTCCACCTCAAAGACCGCCACGATTGGTGGGACTTTGGGTGATACGTAACCATCCACCCGCTGGNCCCTTACCCTCTGTGCAAAAGGGCATGCTGCTGATGCTAGCTGCCACGATTAAGTCTCAAGACTTATAGGTACATTCTATATCGGCAGTAACGACAAACACAAAACCCATAACCNTATACGATCGACCTGGATCGGGTGGCGCGCCA]




>consensus_4898#2
AGAATCNGCGCACGAGGTGTAACTCAAAAAACTAAGAAACCTATCTGTCCGTAACTAATG
ATACTCATCAGCCCCACACTCACTAGTTCATAGCGAAACGTTAAACGCTTCATCGAAGCT
GCTGTAGTGCAACCAATCCCCGCTGGACGTGTAACGTGTTCCACGATCGCTCCACCTCAA
AGACCGCCACGATTGGTGGGACTTTGGGTGATACGTAACCATCCACCCGCTGGNCCCTTA
CCCTCTGTGCAAAAGGGCATGCTGCTGATGCTAGCTGCCACGATTAAGTCTCAAGACTTA
TAGGTACATTCTATATCGGCAGTAACGACAAACACAAAACCCATAACCNTATACGATCGA
CCTGGATCGGGTGGCGCGCCA

consensusID : consensus_4898#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 203
fasta sequence

                              [TTTTTTTTCCCGCAACCCCCTTTTCGGTATGAGGAAAACTGTCTGTGTAATTGCACACACACACATAATATAAATTAAGTACACAGGAGATGTTTTTGCCTACCACAAAATCGAATCATCGTCCTCCACAATCCGTCCCGCAACTTGACTATTCCGTTACGCCTACGAGAACACATCCGCTCATTTTGTACAACTATAAAATA]

[+] EMBL AGA280105            [TTTTTTTTCCCGCAACCCCCTTTTCGGTATGAGGAAAACTGTCTGTGTAATTGCACACACACACATAATATAAATTAAGTACACAGGAGATGTTTTTGCCTACCACAAAATCGAATCATCGTCCTCCACAATCCGTCCCGCAACTTGACTATTCCGTTACGCCTACGAGAACACATCCGCTCATTTTGTACAACTATAAAATA]




>consensus_4898#3
TTTTTTTTCCCGCAACCCCCTTTTCGGTATGAGGAAAACTGTCTGTGTAATTGCACACAC
ACACATAATATAAATTAAGTACACAGGAGATGTTTTTGCCTACCACAAAATCGAATCATC
GTCCTCCACAATCCGTCCCGCAACTTGACTATTCCGTTACGCCTACGAGAACACATCCGC
TCATTTTGTACAACTATAAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4898#1      TACGTGGATAAGGACCGGGAGGACAGCCGGGAGTACAAACCGGTCGCCCCGAAGGTGGAG 60
consensus_4898#2      ------------------------------------------------------------
consensus_4898#0      -------ACACNCCCAGCTCAGCAGATCCCNGGTATTGACGTGTACGTGTCACGATCGTC 53
consensus_4898#3      ------------------------------------------------------------
                                                                                  

consensus_4898#1      CCGAAGAAGATGATCCGATACCGGGACAACAAGATCGTCTCGTTCAAGGGCGAACGGTAC 120
consensus_4898#2      ------------------------------------------------------------
consensus_4898#0      CCCTTAAGACTGCACGATTGGTGGGACTTTGGGTGATCTGTAACCTCCCCTTCCCTCTGT 113
consensus_4898#3      ------------------------------------------------------------
                                                                                  

consensus_4898#1      ACGGAGGTGTCGCGCCGCGGCGGCGAGGAAGAGACTGAACTCAAAAAACCTAAGAAACCT 180
consensus_4898#2      -----------------AGAATCNGCGCACGAGGTGTAACTCAAAAAAC-TAAGAAACCT 42
consensus_4898#0      GCAAAAGTGGCATGCTGCTGATACTAGC-TGCCGTTAATCTCAAGACTTATAGTCATTCT 172
consensus_4898#3      ------------------------------------------------------------
                                                                                  

consensus_4898#1      ATCTGTCCGTAACT----AATGATACTCATCAGCC--CCACACTCACTAGTTCATAGCGA 234
consensus_4898#2      ATCTGTCCGTAACT----AATGATACTCATCAGCC--CCACACTCACTAGTTCATAGCGA 96
consensus_4898#0      TCTCGCAGCTAACACAAAAACAAAACCCATAACCCATCATCACCTGGCAGGGTGCGCCCA 232
consensus_4898#3      ------------------------------------------------------------
                                                                                  

consensus_4898#1      AACGTTAAACGCTT-CATCGAAGCTGCTGTAGTGCAACCAATCCCCGCTGGACGTGTAAC 293
consensus_4898#2      AACGTTAAACGCTT-CATCGAAGCTGCTGTAGTGCAACCAATCCCCGCTGGACGTGTAAC 155
consensus_4898#0      ATGGTCGCACACGCACAGTGTGGTTTGGTTGTAACATCGCATCCTTGCACNAAACCGAAC 292
consensus_4898#3      ------------------------------------------------------------
                                                                                  

consensus_4898#1      GTGTTCCACGATCGCCCC-CCTCAAAGACCGCCACGATTGGTGGGACTTTGGGTGAT-CG 351
consensus_4898#2      GTGTTCCACGATCGCTCCACCTCAAAGACCGCCACGATTGGTGGGACTTTGGGTGATACG 215
consensus_4898#0      A-GTGCCGAAAGCATGTTCCAGCCACATTGAANATANTTACTAAG---TTCTATCACCCC 348
consensus_4898#3      ----------TTTTTTTTCCCGCAACCCCCTTTTCGGTATGAGGAAAACTGTCTG---TG 47
                                         *  * *            *           *   *      

consensus_4898#1      TAACCCTCC------------CCTTCCCTCTGTGCAAA---AGGGCATGCTGCTGATACT 396
consensus_4898#2      TAACCATCCACCCGCTGGNCCCTTACCCTCTGTGCAAA---AGGGCATGCTGCTGATGCT 272
consensus_4898#0      CTACCCCACCCACACNTTACCAATACCCCCCCCAAAAACACAAATTGTCCGCCCCACACT 408
consensus_4898#3      TAATTGCACA-----------CACACACATAATATAAAT--TAAGTACACAGGAGATGTT 94
                        *     *                * *       ***           *     *   *

consensus_4898#1      AGCTGCC-CGTT--AATCTCAAGACTTATAGT--CATTCT-TCTCG-CAGTAAC-ACAAA 448
consensus_4898#2      AGCTGCCACGATTAAGTCTCAAGACTTATAGGTACATTCTATATCGGCAGTAACGACAAA 332
consensus_4898#0      CCCACCNACACTAACCCACTAACATTCCTGACAACCGTCC-TNGCACAACTCAC--CAAT 465
consensus_4898#3      TTTGCCTACCACAAAATCGAATCATCGTCCTCCACAATCCGTCCCGCAACTTGA--CTAT 152
                           *  *           *  *          *  **  *  *   * *     * * 

consensus_4898#1      AACAAAACCCATAACCCATCATCACCTGGCAGGGTGCGCCCAATGGTCGCACACGCACAG 508
consensus_4898#2      CACAAAACCCATAACCNTATACGATCGACCTGGATCGGGTGGCGCGCCA----------- 381
consensus_4898#0      CACGGAA--CANAACACANTGGNCNCCGGCGANNCTGATTGTACCTCCGNCNAACGCCGN 523
consensus_4898#3      TCCGTTACGCCTACGAGAACACATCC--GCTCATTTTGTACAACTATAAAATA------- 203
                        *   *  *  *            *   *                              

consensus_4898#1      TGTGGTTGGTGTAACATCGATCTGACGAACCGAAAGGCGAAGAGTT--CAGCAATGAGAT 566
consensus_4898#2      ------------------------------------------------------------
consensus_4898#0      TACACGCAACATACNACCAGCTTNNCACCCGNACCGGCATATGGTCGANGGCACGAATAC 583
consensus_4898#3      ------------------------------------------------------------
                                                                                  

consensus_4898#1      AGTAGTAGTTTATCACCCCTCCCCACCCCCCTCACTCCCCCCCAGGAAATGTGGCAATTT 626
consensus_4898#2      ------------------------------------------------------------
consensus_4898#0      AGTACNACATCTTGTANGGATAGGGCCAACAAANAAAAAATCCCAGTGAANCTACANATC 643
consensus_4898#3      ------------------------------------------------------------
                                                                                  

consensus_4898#1      TCAGCTACCTAATTTGAACGTATTTTATAGTTGTACAAAATGAGCGGATGTGTTCTCGT- 685
consensus_4898#2      ------------------------------------------------------------
consensus_4898#0      AAACACAANCAATAAATAGTGATGTNAGGTTNGAAAAAGACGCAANAAACGAAGTANGCT 703
consensus_4898#3      ------------------------------------------------------------
                                                                                  

consensus_4898#1      -----
consensus_4898#2      -----
consensus_4898#0      GAATA 708
consensus_4898#3      -----