cluster # 4904

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Anopheles gambiae
cluster # 4904 cluster # 4904 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4904#0 length = 663 sequences # 2

consensus_4904#1 length = 576 sequences # 2

consensusID : consensus_4904#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 663
fasta sequence

                              [CCGCCGAAGAAATACACTTTATACGGTTGTAAAACCGATTTTATTGAACCGGGCAGAGTGTCTGCGTGTAGAGGAAAAGTTTAAGTACAGGTCGGTACAGAAATTCTCCACGCACAGGATGGGTATGAACGTGAGCCGCCAGGTGGACCTTACGGAGAATGAGTATCTGCAGCGATTCGTCGGCAAAACGCACGTCCCTGCTTACGATGACGATTTCTGGAACAATTTCCTGCAGTATCACATAAATCTACCCACAAACAGCGAAGAACAGCTAAGCCTCGATTCGCGGCTAGAAACGCTCTGCCAGAGCTTTATCAGCCACAATCTACACACCGGCAACTTTGGCTCGTTGATAAACGTCTTTCTGCTGAAGGTGTCTGAGCTGCTGACGCTATCCGACACCGAAAGCAACGTTCACATATGGCACGCGTTCAATGCACTGTTCATTATTCGCTGCCTGGTCAAGTACATGATCGAGACTGGGTCTGAGTATCAACTGCTGCAGCACTTTGAAGCGTTGCCGGTTCAAGCGGCCGATAGCGATGAGACACCGAGCGACGGAACGGCAGCAGGTACCAGCACGGCCATTCCGACCGACATGCGAACGGTGGAGGAAACGAAAGCGGCCGTCGCAAAGCTGGTCGACGGCTCAAAGTTTGAAAC]

[+] EMBL BM620400             [   CCGAAGAAATACACTTTATACGGTTGTAAAACCGATTTTATTGAACCGGGCAGAGTGTCTGCGTGTAGAGGAAAAGTTTAAGTACAGGTCGGTACAGAAATTCTCCACGCACAGGATGGGTATGAACGTGAGCCGCCAGGTGGACCTTACGGAGAATGAGTATCTGCAGCGATTCGTCGGCAAAACGCACGTCCCTGCTTACGATGACGATTTCTGGAACAATTTCCTGCAGTATCACATAAATCTACCCACAAACAGCGAAGAACAGCTAAGCCTCGATTCGCGGCTAGAAACGCTCTGCCAGAGCTTTATCAGCCACAATCTACACACCGGCAACTTTGGCTCGTTGATAAACGTCTTTCTGCTGAAGGTGTCTGAGCTGCTGACGCTATCCGACACCGAAAGCAACGTTCACATATGGCACGCGTTCAATGCACTGTTCATTATTCGCTGCCTGGTCAAGTACATGATCGAGACTGGGTCTGAGTATCAACTGCTGCAGCACTTTGAAGCGTTGCCGGTTCAAGCGGCCGATAGCGATGAGACACCGAGCGACGGAACGGCAGCAGGTACCAGCACGGCCATTCCGACCGACATGCGAACGGTGGAGGAAACGAAAGCGGCCGTCGCAAAGCTGGTCGACGGCTCAAAGTTTGAAAC]
[+] EMBL BM604815             [ccggaaAAGAAATACACTTTATACGGTTGTAAAACCGATTTTATTGAACCGGGCCGAGTGTCTGTGTGTAGAGGAAAAGTTTAAGTATAGGTCGGTACAGAAAATCTCTACGCACAGGATGGGTATGAACGTGAGCCGCCAGGTGGACCTCACGGAGAATGAGTATCTGCAGCGATTCGTCGGCAAAACGCACGTCCCTGCTTACGATGACGATTTCTGGAACAATTTCCTGCAGTATCACATAAATCTACCCACAAACAGCGAAGAACAGCTAAGCCTCGATTCGCGGCTGGAAACGCTCTGCCAGAGCTTTATCAGCCACAATCTACACACCGGCAACTTTGGCTCGTTGATAAACGTCTTTCTGCTGAAGGTGTCTGAGCTGCTGACGCTATCCGACACCGAAAGCAACGTTCACATATGGCACGCGTTCAATGCACTGTTCATTATTCGCTGCCTGGTCAAGTACATGATCGAGACTGGGTCTGAGTATCAACTGCTGCAGCACTTTGAAGCGTTGCCGGT                                                                                                                                          ]




>consensus_4904#0
CCGCCGAAGAAATACACTTTATACGGTTGTAAAACCGATTTTATTGAACCGGGCAGAGTG
TCTGCGTGTAGAGGAAAAGTTTAAGTACAGGTCGGTACAGAAATTCTCCACGCACAGGAT
GGGTATGAACGTGAGCCGCCAGGTGGACCTTACGGAGAATGAGTATCTGCAGCGATTCGT
CGGCAAAACGCACGTCCCTGCTTACGATGACGATTTCTGGAACAATTTCCTGCAGTATCA
CATAAATCTACCCACAAACAGCGAAGAACAGCTAAGCCTCGATTCGCGGCTAGAAACGCT
CTGCCAGAGCTTTATCAGCCACAATCTACACACCGGCAACTTTGGCTCGTTGATAAACGT
CTTTCTGCTGAAGGTGTCTGAGCTGCTGACGCTATCCGACACCGAAAGCAACGTTCACAT
ATGGCACGCGTTCAATGCACTGTTCATTATTCGCTGCCTGGTCAAGTACATGATCGAGAC
TGGGTCTGAGTATCAACTGCTGCAGCACTTTGAAGCGTTGCCGGTTCAAGCGGCCGATAG
CGATGAGACACCGAGCGACGGAACGGCAGCAGGTACCAGCACGGCCATTCCGACCGACAT
GCGAACGGTGGAGGAAACGAAAGCGGCCGTCGCAAAGCTGGTCGACGGCTCAAAGTTTGA
AAC

consensusID : consensus_4904#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 576
fasta sequence

                              [TTTTTTTTAGTTTCCATACCAATCGGTTGCGGACTAACGTCGGAAGATATGTTGCAGCACGGCCATTCCGATCGACATGCGAGCGGTGGAGGAAACGAAAGCGGCCGTCGCAAAGCTGGTCGACGGCTCAAAGTTTGAAACGTTTCTAGAGGCACTGGTTAACATTATCGTCGTGATACCGGTGAAAGAATTCACATATCACCTGCACCTGGAGGCGGTAAACTGCATGATTATACTGCTCTCGGTGAGCCTATTTTCCCAGCAAACGATGGAAAAGTCCACCATCTACCGGACGATCTATCGCTGCCAGCACGCAAACACGCTGATGAGTGCGCTGCTACATTTCCTCAGCCGCATGAGCCAAGCGCCGCAAACAATGTTTGGCTTCGGTACCGGCGGTTCGTTTGTGTTCGGCATTGCCGAATCGCTTTGGTCGATACTGACGTTCGCCCGCAAGCAGCCGGATATACTTACGGCACACGATCTTCCGACGGCCTTCAGGGAGCACTATCCGCTGGCGAACCAAAGCTTGCTGCTGATACTGATCCTTACCAACCGGCACGCAACCAAGGATAA]

[+] EMBL AGA280310            [TTTTTTTTAGTTTCCATACCAATCGGTTGCGGACTAACGTCGGAAGATATGTTGCAGCACGGCCATTCCGATCGACATGCGAGCGGTGGAGGAAACGAAAGCGGCCGTCGCAAAGCTGGTCGACGGCTCAAAGTTTGAAACGTTTCTAGAGGCACTGGTTAACATTATCGTCGTGATACCGGTGAAAGAATTCACATATCACCTGCACCTGGAGGCGGTAAACTGCATGATTATACTGCTCTCGGTGAGCCTATTTTCCCAGCAAACGATGGAAAAGTCCACCATCTACCGGACGATCTATCGCTGCCAGCACGCAAACACGCTGATGAGTGCGCTGCTACATTTCCTCAGCCGCATGAGCCAAGCGCCGCAAACAA                                                                                                                                                                                                       ]
[-] EMBL AGA282007            [                                                                                                                                                                                                                                              CTCTCGGTGAGCCTATTTTCCCAGCAAACGATGGAAAAGTCCACCATCTACCGGACGATCTATCGCTGCCAGCACGCAAACACGCTGATGAGTGCGCTGCTACATTTCCTCAGCCGCATGAGCCAAGCGCCGCAAACAATGTTTGGCTTCGGTACCGGCGGTTCGTTTGTGTTCGGCATTGCCGAATCGCTTTGGTCGATACTGACGTTCGCCCGCAAGCAGCCGGATATACTTACGGCACACGATCTTCCGACGGCCTTCAGGGAGCACTATCCGCTGGCGAACCAAAGCTTGCTGCTGATACTGATCCTTACCAACCGGCACGCAACCAAGGATAA]




>consensus_4904#1
TTTTTTTTAGTTTCCATACCAATCGGTTGCGGACTAACGTCGGAAGATATGTTGCAGCAC
GGCCATTCCGATCGACATGCGAGCGGTGGAGGAAACGAAAGCGGCCGTCGCAAAGCTGGT
CGACGGCTCAAAGTTTGAAACGTTTCTAGAGGCACTGGTTAACATTATCGTCGTGATACC
GGTGAAAGAATTCACATATCACCTGCACCTGGAGGCGGTAAACTGCATGATTATACTGCT
CTCGGTGAGCCTATTTTCCCAGCAAACGATGGAAAAGTCCACCATCTACCGGACGATCTA
TCGCTGCCAGCACGCAAACACGCTGATGAGTGCGCTGCTACATTTCCTCAGCCGCATGAG
CCAAGCGCCGCAAACAATGTTTGGCTTCGGTACCGGCGGTTCGTTTGTGTTCGGCATTGC
CGAATCGCTTTGGTCGATACTGACGTTCGCCCGCAAGCAGCCGGATATACTTACGGCACA
CGATCTTCCGACGGCCTTCAGGGAGCACTATCCGCTGGCGAACCAAAGCTTGCTGCTGAT
ACTGATCCTTACCAACCGGCACGCAACCAAGGATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4904#0      CCGCCGAAGAAATACACTTTATACGGTTGTAAAACCGATT--TTATTGAACCGGGCAGAG 58
consensus_4904#1      ----------------TTTTTTTTAGTTTCCATACCAATCGGTTGCGGACTAACGTCGGA 44
                                       *** *   ***   * *** **   **   **     *  *  

consensus_4904#0      TGTCTGCGTGTAGAGGAAAAGTTTAAGTACAGGTCGGTACAGAAATTCTCCACGCACAGG 118
consensus_4904#1      AG---ATATGTTGCAGCACGGCC---ATTCCGATCGACATGCGAG----CGGTGGAGGAA 94
                       *      *** *  * *  *      * * * ***  *    *     *   * *    

consensus_4904#0      ATGGGTATGAACGTGAGCCGCCAGGTGGACCTTACGGAGAATGAG-TATCTGCAGCGATT 177
consensus_4904#1      ACGAAAGCGGCCGTCGCAAAGCTGGTCGACGGCTCAAAGTTTGAAACGTTTCTAGAGG-- 152
                      * *     *  ***       * *** ***    *  **  ***    * *  ** *   

consensus_4904#0      CGTCGGCAAAACGCACGTCCCTGCTTACGATGAC-GATTTCTGGAACAATTTCCTGCAGT 236
consensus_4904#1      CACTGGTTAACATTATCGTCGTGATACCGGTGAAAGAATTCACATATCACCTGCACCTGG 212
                      *   **  **    *    * ** *  ** ***  ** ***    *  *  * *  * * 

consensus_4904#0      ATCACATAAATCTACCCACAAACAGCGAAGAACAGCTAAGCCTCGATTCGCGGCTAGAAA 296
consensus_4904#1      AGGCGGTAAACTG---CATGATTATACTGCTCTCGGTGAGCCTATTTTCCCAGC---AAA 266
                      *     ****      **  *  *          * * *****   *** * **   ***

consensus_4904#0      CGCTCTGCCAGAGCTTTATCAGCC--ACAATCTACACACCGGCA--ACTTTGGCTCGTTG 352
consensus_4904#1      CGATGGAAAAGTCCACCATCTACCGGACGATCTAT-CGCTGCCAGCACGCAAACACGCTG 325
                      ** *     **  *   ***  **  ** *****  * * * **  **     * ** **

consensus_4904#0      ATAAACGTCTTTCTGCTGAAGGTGTCTGAGCTGCTGACGCTATCCGACACCGAAAGCAAC 412
consensus_4904#1      ATGAGTGCGCTGCTAC----ATTTCCTCAGCCGCATGAGCCA---AGCGCCGCAAACAAT 378
                      ** *  *   * ** *      *  ** *** **    ** *     * *** ** *** 

consensus_4904#0      GTTCACATATGGCACGCGTTCAATGCACTGTTCATTATTCGCTGCCTGGTCAAGTACATG 472
consensus_4904#1      GTTTGGCTTCGGTACCGG--CGGTTCGTT-TGTGTTCGGCATTGCCGAATCGCTT---TG 432
                      ***    *  ** **  *  *  * *  * *   **   *  ****   **   *   **

consensus_4904#0      ATCGAGACTGG-GTCTGAGTATCAACTGCTGCAGCACTTTGAAGCGTTGCCGGTTCAAGC 531
consensus_4904#1      GTCGATACTGACGTTCGCCCGCAAGCAGCCGGATATACTTACGGCACACGATCTTCCGAC 492
                       **** ****  **  *      * * ** * *     **   **        ***   *

consensus_4904#0      GGCCGATAGCGATGAGACACCGAGCGACGGAACGGCAGCAGGTACCAGCACGG--CCATT 589
consensus_4904#1      GGCCTTCAGGGA-GCACTATCCGCTGGCGAACCAAAGCTTGCTGCTGATACTGATCCTTA 551
                      ****   ** ** *    * *    * ** * *       * * *    ** *  ** * 

consensus_4904#0      CCGACCGACATGCGAACGGTGGAGGAAACGAAAGCGGCCGTCGCAAAGCTGGTCGACGGC 649
consensus_4904#1      CCAACCGGCACGC-AACCAAGGATAA---------------------------------- 576
                      ** **** ** ** ***   ***  *                                  

consensus_4904#0      TCAAAGTTTGAAAC 663
consensus_4904#1      --------------