cluster # 4919

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Anopheles gambiae
cluster # 4919 cluster # 4919 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4919#0 length = 853 sequences # 3

consensus_4919#1 length = 330 sequences # 1

consensusID : consensus_4919#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 853
fasta sequence

                              [AGGGTTTATATACGTCAGCGACAGAGCAGCAGTCCCGCAAGGGTTATTCGGAGACGCGCCATTTCAACGGCTGTTTGAATTTAAATGAGTATCACAAGGGCCAGTAAAAAATCAGCACAGAATCAATTAGACGGTGTTAGGCCTTAACGTTACGTAGGTTATGACACAATCTAACATGTCTAAGGCTCTTTCGCTGACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACACAGCAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGACCGTACGC-GTTGAAAAAAACAAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAA-AACAGGCCGGAAAACAA-CATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAGCTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAAAAACTGACCACAGTCGCGGAACCTGCTGCCGGACAAAACGATCCTACTATCG-AGGCAGTGGGTCACTTTCGTTAGTTAA-AAAGAATCTGGGATTCTTTCCTTACGTACTACTAAATATTTACGCCTTAAAGCAACGGGACTACAGCTAAATCTGAAAACAAAACATTACATTACATAGTCCGCCGCGTGGAAGACTACCAATCTACCATCTACCAAAGGGAGCTAAAGGTGAAAGTGAATAAAATATCAATATGATTGTTAATAGCGCATTCCTTCGCGCCGATCGTTTCGCTCGCTAGCGCGATCACGTTCATCAAAAAGAGATGAAAATGCACTCGGCACTTCACTTAAATGCCAGTTTTACACCACAGAT]

[+] EMBL AL693205             [AGGGTTTATATACGTCAGCGACAGAGCAGCAGTCCCGCAAGGGTTATTCGGAGACGCGCCATTTCAACGGCTGTTTGAATTTAAATGAGTATCACAAGGGCCAGTAAAAAATCAGCACAGAATCAATTAGACGGTGTTAGGCCTTAACGTTACGTAGGTTATGACACAATCTAACATGTCTAAGGCTCTTTCGCTGACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACACAGCAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGACCGTACGC GTTGAAAAAAACAAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAA AACAGGCCGGAAAACAA CATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAGCTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAAAAACTGACCACAGTCGCGGAACCTGCTGCCGGACAAAACGATCCTACTATCGCAGGCAGTGGGTCACTTTCGTTAGTTAACAAAGAATCTGG                                                                                                                                                                                                                                                                                           ]
[-] EMBL BX619294             [                                                                                                                                                                                                                                                               ATTGTGAGGATCTTTATACCNAGATGCGTTCAGCGTAAGACGTGACCGTACGCGGTTGAANNAA  AAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAANAACAGGCCGGAAAACAACCATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAGCTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAAAAACTGACCACAGTCGCGGAACCTGCTGCCGGACAAAACGATCCTACTATCG AGGCAGTGGGTCACTTTCGTTAGTTAA AAAGAATCTGGGATTCTTTCCTTACGTACTACTAAATATTTACGCCTTAAAGCAACGGGACTACAG                                                                                                                                                                                                                                    ]
[-] EMBL AGA282416            [                                                                                                                                                                                                                                                                                                                                                                                                                                           AGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAAAAACTGACCACAGTCGCGGAACCTGCTGCCGGACAAAACGATCCTACTATCG AGGCAGTGGGTCACTTTCGTTAGTTAA AAAGAATCTGGGATTCTTTCCTTACGTACTACTAAATATTTACGCCTTAAAGCAACGGGACTACAGCTAAATCTGAAAACAAAACATTACATTACATAGTCCGCCGCGTGGAAGACTACCAATCTACCATCTACCAAAGGGAGCTAAAGGTGAAAGTGAATAAAATATCAATATGATTGTTAATAGCGCATTCCTTCGCGCCGATCGTTTCGCTCGCTAGCGCGATCACGTTCATCAAAAAGAGATGAAAATGCACTCGGCACTTCACTTAAATGCCAGTTTTACACCACAGAT]




>consensus_4919#0
AGGGTTTATATACGTCAGCGACAGAGCAGCAGTCCCGCAAGGGTTATTCGGAGACGCGCC
ATTTCAACGGCTGTTTGAATTTAAATGAGTATCACAAGGGCCAGTAAAAAATCAGCACAG
AATCAATTAGACGGTGTTAGGCCTTAACGTTACGTAGGTTATGACACAATCTAACATGTC
TAAGGCTCTTTCGCTGACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACAC
AGCAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGA
CCGTACGCGTTGAAAAAAACAAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAAAA
CAGGCCGGAAAACAACATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAGC
TCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAA
AAACTGACCACAGTCGCGGAACCTGCTGCCGGACAAAACGATCCTACTATCGAGGCAGTG
GGTCACTTTCGTTAGTTAAAAAGAATCTGGGATTCTTTCCTTACGTACTACTAAATATTT
ACGCCTTAAAGCAACGGGACTACAGCTAAATCTGAAAACAAAACATTACATTACATAGTC
CGCCGCGTGGAAGACTACCAATCTACCATCTACCAAAGGGAGCTAAAGGTGAAAGTGAAT
AAAATATCAATATGATTGTTAATAGCGCATTCCTTCGCGCCGATCGTTTCGCTCGCTAGC
GCGATCACGTTCATCAAAAAGAGATGAAAATGCACTCGGCACTTCACTTAAATGCCAGTT
TTACACCACAGAT

consensusID : consensus_4919#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence

                              [TTTTGTTTTTTTGGACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACACAGCAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGACCGTACGCGTTGAAAAAAAAAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAAAACAGGCCGGAAAACAACCATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAGCTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAAAAACTGACCACAGTCGCGGAACCTGCTGCCGG]

[+] EMBL AGA280792            [TTTTGTTTTTTTGGACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACACAGCAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGACCGTACGCGTTGAAAAAAAAAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAAAACAGGCCGGAAAACAACCATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAGCTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAAAAACTGACCACAGTCGCGGAACCTGCTGCCGG]




>consensus_4919#1
TTTTGTTTTTTTGGACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACACAG
CAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGACC
GTACGCGTTGAAAAAAAAAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAAAACAG
GCCGGAAAACAACCATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAGCTC
GCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAAAAA
ACTGACCACAGTCGCGGAACCTGCTGCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4919#0      AGGGTTTATATACGTCAGCGACAGAGCAGCAGTCCCGCAAGGGTTATTCGGAGACGCGCC 60
consensus_4919#1      ------------------------------------------------------------
                                                                                  

consensus_4919#0      ATTTCAACGGCTGTTTGAATTTAAATGAGTATCACAAGGGCCAGTAAAAAATCAGCACAG 120
consensus_4919#1      ------------------------------------------------------------
                                                                                  

consensus_4919#0      AATCAATTAGACGGTGTTAGGCCTTAACGTTACGTAGGTTATGACACAATCTAACATGTC 180
consensus_4919#1      ------------------------------------------------------------
                                                                                  

consensus_4919#0      TAAGGCTCTTTCGCTGACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACAC 240
consensus_4919#1      TTTTGTTTTTTTG--GACCGTAGGCACTGGCCCAGTAGCAGAAAGGGTCCAAACGAACAC 58
                      *   * * *** *  *********************************************

consensus_4919#0      AGCAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGA 300
consensus_4919#1      AGCAAATCCCAAAACATTGTGAGGATCTTCATACCAAGATGCGGTCAGCGTAAGACGTGA 118
                      ************************************************************

consensus_4919#0      CCGTACGCGTTGAAAAAAACAAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAAAA 360
consensus_4919#1      CCGTACGCGTTGAAAAAAA-AAGTTAACTCAATTAAACCTAACTCGTAGCCTTGTTAAAA 177
                      ******************* ****************************************

consensus_4919#0      CAGGCCGGAAAACAAC-ATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAG 419
consensus_4919#1      CAGGCCGGAAAACAACCATCCATCCCATAATAAGATCGTATTGTACCGTGGACTCCATAG 237
                      **************** *******************************************

consensus_4919#0      CTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAA 479
consensus_4919#1      CTCGCAGGCGTTTTCGTTGCGCTTATTGCATACTTTGCAGGCGCAATGAACGCAACTAAA 297
                      ************************************************************

consensus_4919#0      AAAACTGACCACAGTCGCGGAACCTGCTGCCGGACAAAACGATCCTACTATCGAGGCAGT 539
consensus_4919#1      AAAACTGACCACAGTCGCGGAACCTGCTGCCGG--------------------------- 330
                      *********************************                           

consensus_4919#0      GGGTCACTTTCGTTAGTTAAAAAGAATCTGGGATTCTTTCCTTACGTACTACTAAATATT 599
consensus_4919#1      ------------------------------------------------------------
                                                                                  

consensus_4919#0      TACGCCTTAAAGCAACGGGACTACAGCTAAATCTGAAAACAAAACATTACATTACATAGT 659
consensus_4919#1      ------------------------------------------------------------
                                                                                  

consensus_4919#0      CCGCCGCGTGGAAGACTACCAATCTACCATCTACCAAAGGGAGCTAAAGGTGAAAGTGAA 719
consensus_4919#1      ------------------------------------------------------------
                                                                                  

consensus_4919#0      TAAAATATCAATATGATTGTTAATAGCGCATTCCTTCGCGCCGATCGTTTCGCTCGCTAG 779
consensus_4919#1      ------------------------------------------------------------
                                                                                  

consensus_4919#0      CGCGATCACGTTCATCAAAAAGAGATGAAAATGCACTCGGCACTTCACTTAAATGCCAGT 839
consensus_4919#1      ------------------------------------------------------------
                                                                                  

consensus_4919#0      TTTACACCACAGAT 853
consensus_4919#1      --------------