cluster # 4936

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Anopheles gambiae
cluster # 4936 cluster # 4936 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4936#0 length = 584 sequences # 2

consensus_4936#1 length = 416 sequences # 2

consensusID : consensus_4936#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 584
fasta sequence

                              [AGTATGGTTGTGACACAGTTCGAGTACAGTCGCGAAATTTGTTCGTATG---TTTTTTTTGTGTAAATAGAAAAGTGCTCCTGGTGGTTGGTGTTGTTAAAACGGTTTGAAAATGCTGCAAATTACCCCCGAAACGAAGTCCCGGAAGCTTTAGCAGAACAGGCAGAACCAAAGGGCAGTGCAGAAAGATCACACTGCCAGAAGCATTACAAACACAAACAAACGCACACAGACATCACACATCACATCTACATTAACAC-ACACACACACACGCACACACCCAATCACAACCATGGCAACGAATCCGAATGACCTGGAGTTTGAAAAGAAGTACCTGGCGGACATCGAGCGGGCCATGGCGCTGAGCCTGGAAACGCTCGAGCTGGAAAAGATACGGGCGAGGCAGCGCCAGATGACGCCGGAGCTGGCGAACGATCCGAAAGCCGTCTCGCAAACGCTCGAAGAGTACCGGGCCTATCTGCAGCGGCGGGTCGCGTGCGGCACGGGCAAGGTGGCGGCGGCACCGGCGTCAGGTGCAGGCACATCCGGCAGCACGCTGGAACCACCGCCCGGTCCGGGTGGTCCCG]

[+] EMBL AGA284967            [AGTATGGTTGTGACACAGTTCGAGTACAGTCGCGAAATTTGTTCGTATG   TTTTTTTTGTGTAAATAGAAAAGTGCTCCTGGTGGTTGGTGTTGTTAAAACGGTTTGAAAATGCTGCAAATTACCCCCGAAACGAAGTCCCGGAAGCTTTAGCAGAACAGGCAGAACCAAAGGGCAGTGCAGAAAGATCACACTGCCAGAAGCATTACAAACACAAACAAACGCACACAGACATCACACATCACATCTACATTAACAC ACACACACACACGCACACACCCAATCACAACCATGGCAACGAATCCGAATGACCTGGAGTTTGAAAAGAAGTACCTGGCGGACATCGAGCGGGCCATGGCGCTGAGCCTGGAAACGCTCGAGCTGGAAAAGATACGGGCGAGGCAGCGCCAGATGACGCCGGA                                                                                                                                                                    ]
[+] EMBL BM585977             [                 ccgCGAGTACAGTCGCGAAATTTGTTCGTATGTTTTTTTTTTTGTGTAAATAGAAAAGTGCTCCTGGTGGTTGGTGTTGATAAAACGGTTTGAAAATGCTGCAAATTACCCCCGAAACGAAGTCCCGGAAGCTTTAGCGGAACAGGCAGAACCAAAGGGCAGTGCAGAAAGATCACACTGCCAGAAACATTACAAACACAAACAAACGCACACAGACATCACACATCACATCTACATTAACACAACACACACACACGCACACACCCAATCACAACCATGGCAACGAATCCGAATGACCTGGAGTTTGAAAAGAAGTACCTGGCGGACATCGAGCGGGCCATGGCGCTGAGCCTGGAAACGCTCGAGCTGGAAAAGATACGGGCGAGGCAGCGCCAGATGACGCCGGAGCTGGCGAACGATCCGAAAGCCGTCTCGCAAACGCTCGAAGAGTACCGGGCCTATCTGCAGCGGCGGGTCGCGTGCGGCACGGGCAAGGTGGCGGCGGCACCGGCGTCAGGTGCAGGCACATCCGGCAGCACGCTGGAACCACCGCCCGGTCCGGGTGGTCCCG]




>consensus_4936#0
AGTATGGTTGTGACACAGTTCGAGTACAGTCGCGAAATTTGTTCGTATGTTTTTTTTGTG
TAAATAGAAAAGTGCTCCTGGTGGTTGGTGTTGTTAAAACGGTTTGAAAATGCTGCAAAT
TACCCCCGAAACGAAGTCCCGGAAGCTTTAGCAGAACAGGCAGAACCAAAGGGCAGTGCA
GAAAGATCACACTGCCAGAAGCATTACAAACACAAACAAACGCACACAGACATCACACAT
CACATCTACATTAACACACACACACACACGCACACACCCAATCACAACCATGGCAACGAA
TCCGAATGACCTGGAGTTTGAAAAGAAGTACCTGGCGGACATCGAGCGGGCCATGGCGCT
GAGCCTGGAAACGCTCGAGCTGGAAAAGATACGGGCGAGGCAGCGCCAGATGACGCCGGA
GCTGGCGAACGATCCGAAAGCCGTCTCGCAAACGCTCGAAGAGTACCGGGCCTATCTGCA
GCGGCGGGTCGCGTGCGGCACGGGCAAGGTGGCGGCGGCACCGGCGTCAGGTGCAGGCAC
ATCCGGCAGCACGCTGGAACCACCGCCCGGTCCGGGTGGTCCCG

consensusID : consensus_4936#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 416
fasta sequence

                              [GCCCTGCAGGTGGGCTTGCCCGGGTACGCCGACCGGTTGATAGGCCGCCTGATGGAAGCCGTAGCTGGCGGCCGACATGCTAAGGCTGCGCTGCGTCTTAAAGCCCTGCTCGAACTGTCCAACGGGCGGTTGTGGTGGTGGTGCCTGTGTGTTGAGACGATGCATCTGTTCCACCAATTCCTTCAGATTGTTGCGCGCCTCCTCCTTCGGGTCGGGCGGTTTCGGGACAGCACTGAACGATATCAGGTCCGCCTCGTCCTTTCCGCGCGCCGGCGGCCCCTGTATGCCCGGG-TTGCGCGAGTCACTGTGCCGCCGGACAGCCGGACCACCGCCGGGTGGTGGTTCCAGCGTGCTGCTGGATGTGCCGGCACCTGGCGCCGGTGTCGCCGCCACCTTGCCCGTGCCGCACGCGACAC]

[+] EMBL AGA283678            [GCCCTGCAGGTGGGCTTGCCCGGGTACGCCGACCGGTTGATAGGCCGCCTGATGGAAGCCGTAGCTGGCGGCCGACATGCTAAGGCTGCGCTGCGTCTTAAAGCCCTGCTCGAACTGTCCAACGGGCGGTTGTGGTGGTGGTGCCTGTGTGTTGAGACGATGCATCTGTTCCACCAATTCCTTCAGATTGTTGCGCGCCTCCTCCTTCGGGTCGGGCGGTTTCGGGACAGCACTGAACGATATCAGGTCCGCCTCGTCCTTTCCGCGCGCCGGCGGCCCCTGTATGCCCGGG TTGCGCGAGTCACTGTGCCGCCGGACAGCCGGACCACCGCCGGGTGGTGGTTCCAGCGTGCTGCTGGATGTGCCGGCACCTGGCGCCGGTGTCGCCGCCACCTTGCCCGTGCCGCACGCGACAC]
[+] EMBL AGA281203            [GCCTTGCAGGTGGGCTTGACCGGGTACGCCGACCGGTTGATAGGCCGCCTGGTGGAAGCCGTAGCTGGCGGCCGACATGCTAAGGCTGCGCTGTGTCTTAAAGCCCTGCTCGTACTGTCCAACGGGCGGTTGTGCTGGTGGTGCCTGTGTGTTGAGACGATGCATCTGTTCCACCAATTCCTTCAGATTGTTGCGCGCTTCCTCCTTCGGGTCGGGCGGTTTCGGGACGGCACTGAACGATATCAGGTCCGCTTCGTCCTTTCCGCGCGCCGGCGGCCCCTGTATGCCCGGGTTTGCGCG                                                                                                                     ]




>consensus_4936#1
GCCCTGCAGGTGGGCTTGCCCGGGTACGCCGACCGGTTGATAGGCCGCCTGATGGAAGCC
GTAGCTGGCGGCCGACATGCTAAGGCTGCGCTGCGTCTTAAAGCCCTGCTCGAACTGTCC
AACGGGCGGTTGTGGTGGTGGTGCCTGTGTGTTGAGACGATGCATCTGTTCCACCAATTC
CTTCAGATTGTTGCGCGCCTCCTCCTTCGGGTCGGGCGGTTTCGGGACAGCACTGAACGA
TATCAGGTCCGCCTCGTCCTTTCCGCGCGCCGGCGGCCCCTGTATGCCCGGGTTGCGCGA
GTCACTGTGCCGCCGGACAGCCGGACCACCGCCGGGTGGTGGTTCCAGCGTGCTGCTGGA
TGTGCCGGCACCTGGCGCCGGTGTCGCCGCCACCTTGCCCGTGCCGCACGCGACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4936#0      AGTATGGTTGTGACACAGTTCGAGTACAGTCGCGAAATTTGTTCGTATGTTTTTTTTGTG 60
consensus_4936#1      ------------------------------------------------------------
                                                                                  

consensus_4936#0      TAAATAGAAAAGTGCTCCTGGTGGTTGGTGTTGTTAAAACGGTTTGAAAATGCTGCAAAT 120
consensus_4936#1      ------------------------------------------------------------
                                                                                  

consensus_4936#0      TACCCCCGAAACGAAGTCCCGGAAGCTTTAGCAGAACAGGCAGAACCAAAGGGCA-GTGC 179
consensus_4936#1      ---------------------------------------GCCCTGCAGGTGGGCTTGCCC 21
                                                             **    *    ****  *  *

consensus_4936#0      AGAAAGATCACACTGCCAGAAGCATTACAAACACAAACAAACGCACACAGACATCACACA 239
consensus_4936#1      GGGTACGCCGACCGGTTGATAGGCCGCCTGATGGAAGCCGTAGCTGGCGGCCGACATGCT 81
                       *  *   *   * *     **     *  *   ** *    **   * * *  **  * 

consensus_4936#0      TCACATCTACATTAACACACACACACACACGCACACACCCAATCACAACCATGGCAACGA 299
consensus_4936#1      AAGGCTGCGCTGCGTCTTAAAGCCCTGCTCGAACTGTCCAACGGGCGGTTGTGGTGGTGG 141
                           *   *     *  * *  *   * ** **   ** *    *     ***    * 

consensus_4936#0      ATCCGAATGACCTGGAGTTTGAAAAGAAGTACCTGGCGGACATCGAGCGGGCCATGGCGC 359
consensus_4936#1      T--------GCCTGTGTGTTGAGACGATGCATCTGTTC--CACCAATTCCTTCAGATTGT 191
                                ****    **** * ** * * ***     ** * *      **    * 

consensus_4936#0      TGAGCCTGGAAACGCTCGAGCTGGAAAAGATACGGGCGAGGCAGCGCCAGATGACGCCGG 419
consensus_4936#1      TGCGCGCCTCCTCCTTCGGGTCGGGCGGTTT-----CGGGACAGCACTGAACGATATCAG 246
                      ** **       *  *** *  **      *     ** * **** *   * **   * *

consensus_4936#0      AGCTGGC--GAACGATCCGAAAGCCGTC---TCGCAAACGCTCGAAGAGTACCGGGCCTA 474
consensus_4936#1      GTCCGCCTCGTCCTTTCCGCGCGCCGGCGGCCCCTGTATGCCCGGGTTGCGC-GAGTCAC 305
                        * * *  *  *  ****   **** *    *    * ** **    *  * * * *  

consensus_4936#0      TCTGCAGCGGCGGGTCGCGTGCGGCACGGGCAAGGTGGCGGCGGCACCGGCGTCAGGTGC 534
consensus_4936#1      TGTGCCGCCGGACAGCCGGACCACCGCCGG-GTGGTGGTTCCAGCGT-GCTGCTGGATGT 363
                      * *** ** *     *  *  *  * * **   *****   * **   *  *   * ** 

consensus_4936#0      AGGCACATCCGGCAGCACGCTGGAACCACCGCCCGGTCCGGGTGGTCC-CG---- 584
consensus_4936#1      GCCGGCACCTGGCGC--CGGTGTCGCCGCCACCTTGCCCGTGCCGCACGCGACAC 416
                           ** * ***    ** **   ** ** **  * *** *  *  * **