cluster # 4939

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Anopheles gambiae
cluster # 4939 cluster # 4939 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4939#0 length = 892 sequences # 2

consensus_4939#1 length = 404 sequences # 2

consensusID : consensus_4939#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 892
fasta sequence

                              [GCAGAATCGCCACGAGGCTATACTTTAACCTTGCCCTTCATCTGCTCCGCAAGTATGGCCACTCCTTTA-CAGGAAAGCTAGCCCTTGTGACCGGTGCCGGTTCTGGAATTGGCCGTGCGACAACCAAACTGTTGGCACGCGATGGAGCGATCGTTGTAGCGGTCGATCGTAACGTACAGGCGGCCCAGGAAACGATCGCATCGCTCACGGCGGGCGACAATGCGGCCTACGAGATGGACGTCTCGTCCGGCGACAGTGTTGATGCCGTGCTGAAGGAAGTGATTGGCCGGTACAAGCGCCCACCGACAGTGGTCGTTAATTCGGCCGGTATTACCCGCGATAACTTCCTGCTGAAGATGCCCGAGTCCGACTTTGATGCGGTGATCAACGTGAACCTGAAGGGTACGTGGTTGGTGCTGCAACGTTTCGGCCGGGCCATGATCGAGCACGAGCTGGCCGGTTCGATGGTGAACGTGTCGTCGATCGTTGCCCGCGACCGGCGAACATCGGACAGTCGGAAACTATTCTCCGAGCAAGGCCGGGGTGGAAGCGATGACCAAGGTGGGTGGCACGGCGAGTTCGGCCGGTACAACATCCGGGTGAATGCGATCGTGCCCGGGTTCATCCACACGACCGGATACGGGGACGGTGCCGCAGAAGGTGAAACGATATGATCATCATGCAATGTGCCTTGAAGGGCGCTTCGGAAATCCGGAAGGAACATTGCGGAGGTAGCAGCCTTTCTGGGCAATCCGGGAAAAAAGAGCAAGGNTAACGTAAACGGTACCNTCGAATCGAAAGGTCACAATTGGAGCAGGATTAAGACGAATTTGGANCAATGGTCCATCGTTCGCCGCACCAATATTACCGGGTCCAACAGGCATGATACCGG]

[+] EMBL BX467680             [GCAGAATCGCCACGAGGCTATACTTTAACCTTGCCCTTCATCTGCTCCGCAAGTATGGCCACTCCTTTA CAGGAAAGCTAGCCCTTGTGACCGGTGCCGGTTCTGGAATTGGCCGTGCGACAACCAAACTGTTGGCACGCGATGGAGCGATCGTTGTAGCGGTCGATCGTAACGTACAGGCGGCCCAGGAAACGATCGCATCGCTCACGGCGGGCGACAATGCGGCCTACGAGATGGACGTCTCGTCCGGCGACAGTGTTGATGCCGTGCTGAAGGAAGTGATTGGCCGGTACAAGCGCCCACCGACAGTGGTCGTTAATTCGGCCGGTATTACCCGCGATAACTTCCTGCTGAAGATGCCCGAGTCCGACTTTGATGCGGTGATCAACGTGAACCTGAAGGGTACGTGGTTGGTGCTGCAACGTTTCGGCCGGGCCATGATCGAGCACGAGCTGGCCGGTTCGATGGTGAACGTGTCGTCGATCGTTGCCCGCGACCGGCGAACATCGGACAGTCGGAAACTATTCTCCGAGCAAGGCCGGGGTGGAAGCGATGACCAAGGTGGGTGGCACGGCGAGTTCGGCCGGTACAACATCCGGGTGAATGCGATCGTGCCCGGGTTCATCCACACGACCGGATACGGGGACGGTGCCGCAGAAGGTGAAACGATATGATCATCATGCAATGTGCCTTGAAGGGCGCTTCGGAAATCCGGAAGGAACATTGCGGAGGTAGCAGCCTTTCTGGGCAATCCGGGAAAAAAGAGCAAGGNTAACGTAAACGGTACCNTCGAATCGAAAGGTCACAATTGGAGCAGGATTAAGACGAATTTGGANCAATGGTCCATCGTTCGCCGCACCAATATTACCGGGTCCAACAGGCATGATACCGG]
[+] EMBL BX623247             [                                                 CAAGTATGGCCACTCCTTTAGCAGGAAAGCTAGCCCTTGTGACCGGTGCCGGTTCTGGAATTGGCCGTGCGACAACCAAACTGTTGGCACGCGATGGAGCGATCGTTGTAGCGGTCGATCGTAACGTACAGGCGGCCCAGGAAACGATCGCATCGCTCACGGCGGGCGACAATGCGGCCTACGAGATGGACGTCTCGTCCGGCGACAGTGTTGATGCCGTGCTGAAGGAAGTGATTGGCCGGTACAAGCGCCCACCGACAGTGGTCGTTAATTCGGCCGGTATTACCCGCGATAACTTCCTGCTGAAGATGCCCGAGTCCGACTTTGATGCGGTGATCAACGTGAACCTGAAGGGTACGTGGTTGGTGCTGCAACGTTTCGGCCGGGCCATGATCGAGCACGAGCTGGCCGGTTCGATGGTGAACGTGTCGTCGATCGTTGCCCGC ACCGGC AACATCGGACAGTCG  AACTATTCTCCGAGCAAGGCCGGGGTGGAAGCGATGACCAAGGT GGTGGCAC GCGAGTTCGGCCGGTACAACATCCGGGTGAATG                                                                                                                                                                                                                                                                                              ]




>consensus_4939#0
GCAGAATCGCCACGAGGCTATACTTTAACCTTGCCCTTCATCTGCTCCGCAAGTATGGCC
ACTCCTTTACAGGAAAGCTAGCCCTTGTGACCGGTGCCGGTTCTGGAATTGGCCGTGCGA
CAACCAAACTGTTGGCACGCGATGGAGCGATCGTTGTAGCGGTCGATCGTAACGTACAGG
CGGCCCAGGAAACGATCGCATCGCTCACGGCGGGCGACAATGCGGCCTACGAGATGGACG
TCTCGTCCGGCGACAGTGTTGATGCCGTGCTGAAGGAAGTGATTGGCCGGTACAAGCGCC
CACCGACAGTGGTCGTTAATTCGGCCGGTATTACCCGCGATAACTTCCTGCTGAAGATGC
CCGAGTCCGACTTTGATGCGGTGATCAACGTGAACCTGAAGGGTACGTGGTTGGTGCTGC
AACGTTTCGGCCGGGCCATGATCGAGCACGAGCTGGCCGGTTCGATGGTGAACGTGTCGT
CGATCGTTGCCCGCGACCGGCGAACATCGGACAGTCGGAAACTATTCTCCGAGCAAGGCC
GGGGTGGAAGCGATGACCAAGGTGGGTGGCACGGCGAGTTCGGCCGGTACAACATCCGGG
TGAATGCGATCGTGCCCGGGTTCATCCACACGACCGGATACGGGGACGGTGCCGCAGAAG
GTGAAACGATATGATCATCATGCAATGTGCCTTGAAGGGCGCTTCGGAAATCCGGAAGGA
ACATTGCGGAGGTAGCAGCCTTTCTGGGCAATCCGGGAAAAAAGAGCAAGGNTAACGTAA
ACGGTACCNTCGAATCGAAAGGTCACAATTGGAGCAGGATTAAGACGAATTTGGANCAAT
GGTCCATCGTTCGCCGCACCAATATTACCGGGTCCAACAGGCATGATACCGG

consensusID : consensus_4939#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 404
fasta sequence

                              [CCCGAGCAAGGCCGGGGTGGAAGCGATGACCAAGGTGGTGGCACGCGAGTTCGGCCGGTACAACATCCGGGTGAATGCGATCGTGCCCGGGTTCATCCACACGCCGATGACGGGGAC-GTGCCGCAGAAGGTGAAAGATATGATCATCATGCAATGTGCCTTGCGGCGCTTTGGAAATCCGGAAGAAATTGCGGAGGTAGCAGCCTTTCTGGCATCGGAAAAGAGCAGCTACGTAAACGGTACCTCGATCGAAGTCACTGGCGGATAGACGAATTGAAATGGTCCATCTTCCGCCCAATATTACGGCTCAAAAGGATGATACAGGTGTTACAGCTCAAAGCTACCTCGTACAAAACCATACTACCTCCCTTAATTGTGCATTTAATATTGAGAATGATTGAAGTG]

[-] EMBL AGA281298            [CCCGAGCAAGGCCGGGGTGGAAGCGATGACCAAGGTGGTGGCACGCGAGTTCGGCCGGTACAACATCCGGGTGAATGCGATCGTGCCCGGGTTCATCCACACGCCGATGACGGGGAC GTGCCGCAGAAGGTGAAAGATATGATCATCATGCAATGTGCCTTGCGGCGCTTTGGAAATCCGGAAGAAATTGCGGAGGTAGCAGCCTTTCTGGCATCGGAAAAGAGCAGCTACGTAAACGGTACCTCGATCGAAGTCACTGGCGGATAGACGAATTGAAATGGTCCATCTTCCGCCCAATATTACGGCTCAAAAGGATGATACAGGTGTTACAGCTCAAAGCTACCTCGTACAAAACCATACTACCTCCCTTAATTGTGCATTTAATATTGAGAATGATTGAAGTG]
[-] EMBL AGA281305            [                                       GGCACGCGAGTTCGGCCGGTACAACATCCGGGTGAATGCGATCGTGCCCGGGTTCATCCACACGCCGATGACGGGGACGGTGCCGCAGAAGGTGAAAGATATGATCATCATGCAATGTGCCTTGCGGCGCTTTGGAAATCCGGAAGAAATTGCGGAGGTAGCAGCCTTTCTGGCATCGGAAAAGAGCAGCTACGTAAACGGTACCTCGATCGAAGTCACTGGCGGATAGACGAATTGAAATGGTCCATCTTCCGCCCAATATTACGGCTCAAAAGGATGATACAGGTGTTACAGCTCAAAGCTACCTCGTACAAAACCATACTACCTCCCTTAATTGTGCATTTAATATTGAGAATGA        ]




>consensus_4939#1
CCCGAGCAAGGCCGGGGTGGAAGCGATGACCAAGGTGGTGGCACGCGAGTTCGGCCGGTA
CAACATCCGGGTGAATGCGATCGTGCCCGGGTTCATCCACACGCCGATGACGGGGACGTG
CCGCAGAAGGTGAAAGATATGATCATCATGCAATGTGCCTTGCGGCGCTTTGGAAATCCG
GAAGAAATTGCGGAGGTAGCAGCCTTTCTGGCATCGGAAAAGAGCAGCTACGTAAACGGT
ACCTCGATCGAAGTCACTGGCGGATAGACGAATTGAAATGGTCCATCTTCCGCCCAATAT
TACGGCTCAAAAGGATGATACAGGTGTTACAGCTCAAAGCTACCTCGTACAAAACCATAC
TACCTCCCTTAATTGTGCATTTAATATTGAGAATGATTGAAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4939#0      GCAGAATCGCCACGAGGCTATACTTTAACCTTGCCCTTCATCTGCTCCGCAAGTATGGCC 60
consensus_4939#1      ------------------------------------------------------------
                                                                                  

consensus_4939#0      ACTCCTTTACAGGAAAGCTAGCCCTTGTGACCGGTGCCGGTTCTGGAATTGGCCGTGCGA 120
consensus_4939#1      ------------------------------------------------------------
                                                                                  

consensus_4939#0      CAACCAAACTGTTGGCACGCGATGGAGCGATCGTTGTAGCGGTCGATCGTAACGTACAGG 180
consensus_4939#1      ------------------------------------------------------------
                                                                                  

consensus_4939#0      CGGCCCAGGAAACGATCGCATCGCTCACGGCGGGCGACAATGCGGCCTACGAGATGGACG 240
consensus_4939#1      ------------------------------------------------------------
                                                                                  

consensus_4939#0      TCTCGTCCGGCGACAGTGTTGATGCCGTGCTGAAGGAAGTGATTGGCCGGTACAAGCGCC 300
consensus_4939#1      ------------------------------------------------------------
                                                                                  

consensus_4939#0      CACCGACAGTGGTCGTTAATTCGGCCGGTATTACCCGCGATAACTTCCTGCTGAAGATGC 360
consensus_4939#1      ------------------------------------------------------------
                                                                                  

consensus_4939#0      CCGAGTCCGACTTTGATGCGGTGATCAACGTGAACCTGAAGGGTACGTGGTTGGTGCTGC 420
consensus_4939#1      ------------------------------------------------------------
                                                                                  

consensus_4939#0      AACGTTTCGGCCGGGCCATGATCGAGCACGAGCTGGCCGGTTCGATGGTGAACGTGTCGT 480
consensus_4939#1      ------------------------------------------------------------
                                                                                  

consensus_4939#0      CGATCGTTGCCCGCGACCGGCGAACATCGGACAGTCGGAAACTATTCTCCGAGCAAGGCC 540
consensus_4939#1      -----------------------------------------------CCCGAGCAAGGCC 13
                                                                      ************

consensus_4939#0      GGGGTGGAAGCGATGACCAAGGTGGGTGGCACGGCGAGTTCGGCCGGTACAACATCCGGG 600
consensus_4939#1      GGGGTGGAAGCGATGACCAAGGTGG-TGGCACG-CGAGTTCGGCCGGTACAACATCCGGG 71
                      ************************* ******* **************************

consensus_4939#0      TGAATGCGATCGTGCCCGGGTTCATCCACACGACCGGATACGGGGACGGTGCCGCAGAAG 660
consensus_4939#1      TGAATGCGATCGTGCCCGGGTTCATCCACACG-CCGATGACGGGGACG-TGCCGCAGAAG 129
                      ******************************** ***   ********* ***********

consensus_4939#0      GTGAAACGATATGATCATCATGCAATGTGCCTTGAAGGGCGCTTCGGAAATCCGGAAGGA 720
consensus_4939#1      GTGAAA-GATATGATCATCATGCAATGTGCCTTG--CGGCGCTTTGGAAATCCGGAAGAA 186
                      ****** ***************************   ******* ************* *

consensus_4939#0      ACATTGCGGAGGTAGCAGCCTTTCTGGGCAATCCGGGAAAAAAGAGCAAGGNTAACGTAA 780
consensus_4939#1      --ATTGCGGAGGTAGCAGCCTTTCTGG------CATCGGAAAAGAGCA---GCTACGTAA 235
                        *************************      *     *********      ******

consensus_4939#0      ACGGTACCNTCGAATCGAAAGGTCACAATTGGAGCAGGATTAAGACGAATTTGGANCAAT 840
consensus_4939#1      ACGGTACCTC--GATCGAA--GTCACTGGCGGAT--------AGACGAATT----GAAAT 279
                      ********     ******  *****    ***         *********      ***

consensus_4939#0      GGTCCATCGTTCGCCGCACCAATATTACCGGGTCCAACAGGCATGATACCGG-------- 892
consensus_4939#1      GGTCCATCTTCCGCC----CAATATTAC--GGCTCAAAAGG-ATGATACAGGTGTTACAG 332
                      ******** * ****    *********  **  *** *** ******* **        

consensus_4939#0      ------------------------------------------------------------
consensus_4939#1      CTCAAAGCTACCTCGTACAAAACCATACTACCTCCCTTAATTGTGCATTTAATATTGAGA 392
                                                                                  

consensus_4939#0      ------------
consensus_4939#1      ATGATTGAAGTG 404