cluster # 4956

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Anopheles gambiae
cluster # 4956 cluster # 4956 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4956#0 length = 595 sequences # 1

consensus_4956#1 length = 497 sequences # 3

consensusID : consensus_4956#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence

                              [ACACCCCAGTAGTCGTGTTTGTTAGTGGAAACCTTGATTATTGTTTTTTTTTTATGCGCAAGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAATTAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCGCTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAATTTATTAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCTAATAGTAAACTGCACACGCACGCTTCCTTCAGCTCGAGCGCGCTGATTTTCGCCAGATTGCGCCGCTTCTCCTCCTGCAGTAACTGCACGCTCTGGAGCAGCTGCTCGATCTGCCTCTCCTGGCTGGTGTTTTCGGCGCGGGCCGTTACGAGCAGCTCGGACAGATTCTTCACCTTCCACTCGAGCGCCACACTTTTGGGCGTCACCGGGGACGGTTTCTTCATCTCGCGCTTGCCGTTCGGCGTGCTGGTGATCATTTGTACCGCGCTTTGGCAGAGGGTAGCGCTGGGACCAGGCAA]

[+] EMBL CNS08DSG             [ACACCCCAGTAGTCGTGTTTGTTAGTGGAAACCTTGATTATTGTTTTTTTTTTATGCGCAAGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAATTAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCGCTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAATTTATTAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCTAATAGTAAACTGCACACGCACGCTTCCTTCAGCTCGAGCGCGCTGATTTTCGCCAGATTGCGCCGCTTCTCCTCCTGCAGTAACTGCACGCTCTGGAGCAGCTGCTCGATCTGCCTCTCCTGGCTGGTGTTTTCGGCGCGGGCCGTTACGAGCAGCTCGGACAGATTCTTCACCTTCCACTCGAGCGCCACACTTTTGGGCGTCACCGGGGACGGTTTCTTCATCTCGCGCTTGCCGTTCGGCGTGCTGGTGATCATTTGTACCGCGCTTTGGCAGAGGGTAGCGCTGGGACCAGGCAA]




>consensus_4956#0
ACACCCCAGTAGTCGTGTTTGTTAGTGGAAACCTTGATTATTGTTTTTTTTTTATGCGCA
AGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAATTAGC
AAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCGCTGT
GACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAATTTAT
TAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCTAATA
GTAAACTGCACACGCACGCTTCCTTCAGCTCGAGCGCGCTGATTTTCGCCAGATTGCGCC
GCTTCTCCTCCTGCAGTAACTGCACGCTCTGGAGCAGCTGCTCGATCTGCCTCTCCTGGC
TGGTGTTTTCGGCGCGGGCCGTTACGAGCAGCTCGGACAGATTCTTCACCTTCCACTCGA
GCGCCACACTTTTGGGCGTCACCGGGGACGGTTTCTTCATCTCGCGCTTGCCGTTCGGCG
TGCTGGTGATCATTTGTACCGCGCTTTGGCAGAGGGTAGCGCTGGGACCAGGCAA

consensusID : consensus_4956#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 497
fasta sequence

                              [AAACACACCCAGTAGTCGTGTTTGTTAGTGGAAAACCTTGATTATTGTTTTTTTTTTATGCGCAAGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAATTAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCGCTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAATTTATTAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCTAATAGTAAACTGCACACTGCCTACTAACTAACGTTAAATTAACTTGCCTAACAATTCCGGCCCTGTGGTATCGCTCCCGTGTGTCCTAAACGATTGACCGTGCAACAATACAACTGCTTTTTTTTAGTGAATCAACTAGCACAGCAGGACCGAAACAGCGACGGAAATTTGTTGAAATTGCACCCGTTGCGAATGGG]

[+] EMBL AGA281714            [AAACACACCCAGTAGTCGTGTTTGTTAGTGGAAAACCTTGATTATTGTTTTTTTTTTATGCGCAAGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAATTAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCGCTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAATTTATTAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCTAATAGTAAACTGCACACTGCCTACTAACTAACGTTAAATTAACTTGCCTAACAATTCCGGCCCTGTGGTATCGCTCCCGTGTGTCCTAAACGATTGACCGTGCAACAATACAACTGCTTTTTTTTAGTGAATCAACTAGCACAGCAGGACCGAAACAGCGACGGAAATTTGTTGAAATTGCACCCGTTGCGAATGGG]
[+] EMBL CNS08GAM             [                                                                            ctTCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAATTAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCGCTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAATTTATTAATGTTATGCCCTTTAAAAAGAAT                                                                                                                                                                                                                                    ]
[+] EMBL CNS08G8I             [                                                                                                                                                    AAACGGGTTCGCTTCGGACTATCGCGCTTCCGCTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAATTTATTAATGTTATGCC                                                                                                                                                                                                                                                 ]




>consensus_4956#1
AAACACACCCAGTAGTCGTGTTTGTTAGTGGAAAACCTTGATTATTGTTTTTTTTTTATG
CGCAAGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAAT
TAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCG
CTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAAT
TTATTAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCT
AATAGTAAACTGCACACTGCCTACTAACTAACGTTAAATTAACTTGCCTAACAATTCCGG
CCCTGTGGTATCGCTCCCGTGTGTCCTAAACGATTGACCGTGCAACAATACAACTGCTTT
TTTTTAGTGAATCAACTAGCACAGCAGGACCGAAACAGCGACGGAAATTTGTTGAAATTG
CACCCGTTGCGAATGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4956#0      --ACAC-CCCAGTAGTCGTGTTTGTTAGTGGAAA-CCTTGATTATTGTTTTTTTTTTATG 56
consensus_4956#1      AAACACACCCAGTAGTCGTGTTTGTTAGTGGAAAACCTTGATTATTGTTTTTTTTTTATG 60
                        **** *************************** *************************

consensus_4956#0      CGCAAGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAAT 116
consensus_4956#1      CGCAAGAGTATCATCTCATCATCACAATGTCGTACATACATAAAATCCGCTCAATAAAAT 120
                      ************************************************************

consensus_4956#0      TAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCG 176
consensus_4956#1      TAGCAAAAAATGCGTTCGACAGCAAAAAAAACGGGTTCGCTTCGGACTATCGCGCTTCCG 180
                      ************************************************************

consensus_4956#0      CTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAAT 236
consensus_4956#1      CTGTGACATTTGCCCGACACATTAACTCAACCTTGGAGCACATCAATGATATTGCGTAAT 240
                      ************************************************************

consensus_4956#0      TTATTAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCT 296
consensus_4956#1      TTATTAATGTTATGCCCTTTAAAAAGAATAAAAAAATCACCCCTTTCTACCGCTGGTTCT 300
                      ************************************************************

consensus_4956#0      AATAGTAAACTGCACAC-GCACGCTTCCT----TCAGCTCGA---GCGCGCTGATTTTCG 348
consensus_4956#1      AATAGTAAACTGCACACTGCCTACTAACTAACGTTAAATTAACTTGCCTAACAATTCCGG 360
                      ***************** **   **  **    * *  *  *   **      ***   *

consensus_4956#0      CCAGATTGCGCCGCTTCTCCTCCTGCAGTAACTGCACGCTCTGGAGCAGCTGCTCGATCT 408
consensus_4956#1      CCCTGTGGTATCGCTC--CCGTGTGTCCTAAACGATTGACC--GTGCAACAATACAA-CT 415
                      **   * *   ****   **   **   ***  *   *  *  * *** *    * * **

consensus_4956#0      GCCTCTCCTGGCTGGTGTTTTCGGCGCGGGCCGTTACGAGCAGCTCGGACAGATTCTTCA 468
consensus_4956#1      GCTTTTTTTTAGTGAATCAACTAGCACAGCAGGACCGAAACAGCGACGGAAATTTGTTGA 475
                      ** * *  *   **         ** * *   *     * ****   *  *  ** ** *

consensus_4956#0      CCTTCCACTCGAGCGCCACACTTTTGGGCGTCACCGGGGACGGTTTCTTCATCTCGCGCT 528
consensus_4956#1      AATTGCACCCGT------TGCGAATGGG-------------------------------- 497
                        ** *** **         *   ****                                

consensus_4956#0      TGCCGTTCGGCGTGCTGGTGATCATTTGTACCGCGCTTTGGCAGAGGGTAGCGCTGGGAC 588
consensus_4956#1      ------------------------------------------------------------
                                                                                  

consensus_4956#0      CAGGCAA 595
consensus_4956#1      -------