These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 947 fasta sequence [CCGGGGGCCTGATCCAACCATACATACCAGCCGTACAAGACCGTGATGAGCTCCCACTGGTGGTACATTTACCTCATAGCACTCAGCCTGCTGGCCTGGCTGGTCGATGGGCGACGGGAGGCCAAGTTCAACTGCACGCTGACCGCCAACTACTACGACTGTCTGTTCCGGGACGTGATCATACGCAGCGAGGCGGACGCGGACAGCATCTTCTTCGGCGTGCAGAACTTCAACGACACCAGCATCGCATTCCGCGACTCCTCCATGGTGGTGCTGCCGAAGAAGATCTTCGAAACGTTCCCGGCGATCCAGTACCTGTCGAGCGACGCGTGCCACCTGTACGACAACCGGCTCACGCGGCTGAACAACTTCGTGTTCAACGGTGCGCTGCAGCTCGAGATACTGTCGCTGTACAACAACACGATCAAGCAGCTGGAGGAGCACGCGTTCGATGGGCTGGGCCATCTGCGCCTGCTCTACATGGACGAGAACCAGCTGGAGAAGCTGCCGGAGGGTCTGTTTTCCGGGCTGGAGGAGCTGCAGATACTGGAGCTGCAGCACAACCGCATCAAGGAGATCAACGACGACCAGTTCGTGCTGTGCCCGATGCTGCGCGAGCTCAACCTGAGCGCGAACATGATCAGCACGTTCAACATGTCGCAGCTGCAGTCGCTGAACAAGCTGGAAAACGCTCGACATTGCGCGGAACTATCTGGACGAGGTGTTCGTCACCAAGTACCTCCGGACGCTGAACGCGCAGGAAAACCAGATCAGCCGGATCGTGATGGACCAGGGCGACTTCTTTCAGCTGACGCACCTCAACCTCTCCCGCAACAACATCGCGAACATTAACAACATCTTCAAGGTTCCGCAACCTGATCGAGCTGGACGTGTCGTACAACGAGCTGGTAACGCTGGACTTTGTCATCTTCGCCTTCATGAAGAAC] [+] EMBL BM657636 [CCGGGGGCCTGATCCAACCATACATACCAGCCGTACAAGACCGTGATGAGCTCCCACTGGTGGTACATTTACCTCATAGCACTCAGCCTGCTGGCCTGGCTGGTCGATGGGCGACGGGAGGCCAAGTTCAACTGCACGCTGACCGCCAACTACTACGACTGTCTGTTCCGGGACGTGATCATACGCAGCGAGGCGGACGCGGACAGCATCTTCTTCGGCGTGCAGAACTTCAACGACACCAGCATCGCATTCCGCGACTCCTCCATGGTGGTGCTGCCGAAGAAGATCTTCGAAACGTTCCCGGCGATCCAGTACCTGTCGAGCGACGCGTGCCACCTGTACGACAACCGGCTCACGCGGCTGAACAACTTCGTGTTCAACGGTGCGCTGCAGCTCGAGATACTGTCGCTGTACAACAACACGATCAAGCAGCTGGAGGAGCACGCGTTCGATGGGCTGGGCCATCTGCGCCTGCTCTACATGGACGAGAACCAGCTGGAGAAGCTGCCGGAGGGTCTGTTTTCCGGGCTGGAGGAGCTGCAGATACTGGAGCTGCAGCACAACCGCATCAAGGAGATCAACGACGACCAGTTCGTGCTGTGCCCGATGCTGCGCGAGCTCAACCTGAGCGCGAACATGATCAGCACGTTCAACATGTCGCAGCTGCAGTCGCTGAACAAGCTGGAAAACGCTCGACATTGCGCGGAACTATCTGGACGAGGTGTTCGTCACCAAG ] [+] EMBL BX609448 [ GCCCAATGCTGCGCGAGCTCAACCTGAGCGCGAACATGATCAGCACGTTCAACATGTCGCAGCTGCAGTCGCTGAACAAGCTGG AAACGCTCGACATTGCGCGGAACTATCTGGACGAGGTGTTCGTCACCAAGTACCTCCGGACGCTGAACGCGCAGGAAAACCAGATCAGCCGGATCGTGATGGACCAGGGCGACTTCTTTCAGCTGACGCACCTCAACCTCTCCCGCAACAACATCGCGAACATTAACAACATCTTCAAGGTTCCGCAACCTGATCGAGCTGGACGTGTCGTACAACGAGCTGGTAACGCTGGACTTTGTCATCTTCGCCTTCATGAAGAAC] consensusID : consensus_4960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CAACCGGACTGGGGCCTGATCCAACCATACATACCAGCCGTACAAGACCGTGATGAGCTCCCACTGGTGGTACATTTACCTCATAGCACTCAGCCTGCTGGCCTGGCTGGTCGATGGGCGACGGGAGGCCAAGTTCAACTGCACGCTGACCGCCAACTACTACGACTGCCTGTTCCGGGACGTGATCATACGCAGCGAGGCGGACGCGGACAGCATCTTCTCCGGCGTGCAGAACTTCAACGACACCAGCATCGCGTTCCGCGACTCCTCCATGGTGCTGCTGCCGAAGAAGATCTTCGAAACGTTCCCGGCGATCCAGTACCTGTCGAGCGACGCGTGCCACATCCAGAAGCTGCTCGGCGGCACGTTCGCGAACGCGCAGCGCCTGCAGGAGCTGCACCTGTACGACAACCGGCTTACGCGGCTGAACAACTTCGTGTTCAACGGTGCGCTGCAGCTCGAGATACTGTCGCTGTACAACAACACGATCAAGCAGCTGGAGGAGCACGCGTTCGATGGGCTGGGCCATCTGCGCCTGCTCTACATGGACGAGAACCAGCTGGAGAAGCTGCCGGAGGGTCTGTTTTCCGGGCTGGAGGAGCTGCAGATACTGGAGCTGCAGCACAACCGCATCAAGGAGATCAACGACGACCAGTTCGTGCTGTGCCCAATGCTGCGCGAGCTCAA] [+] EMBL BX607993 [CAACCGGACTGGGGCCTGATCCAACCATACATACCAGCCGTACAAGACCGTGATGAGCTCCCACTGGTGGTACATTTACCTCATAGCACTCAGCCTGCTGGCCTGGCTGGTCGATGGGCGACGGGAGGCCAAGTTCAACTGCACGCTGACCGCCAACTACTACGACTGCCTGTTCCGGGACGTGATCATACGCAGCGAGGCGGACGCGGACAGCATCTTCTCCGGCGTGCAGAACTTCAACGACACCAGCATCGCGTTCCGCGACTCCTCCATGGTGCTGCTGCCGAAGAAGATCTTCGAAACGTTCCCGGCGATCCAGTACCTGTCGAGCGACGCGTGCCACATCCAGAAGCTGCTCGGCGGCACGTTCGCGAACGCGCAGCGCCTGCAGGAGCTGCACCTGTACGACAACCGGCTTACGCGGCTGAACAACTTCGTGTTCAACGGTGCGCTGCAGCTCGAGATACTGTCGCTGTACAACAACACGATCAAGCAGCTGGAGGAGCACGCGTTCGATGGGCTGGGCCATCTGCGCCTGCTCTACATGGACGAGAACCAGCTGGAGAAGCTGCCGGAGGGTCTGTTTTCCGGGCTGGAGGAGCTGCAGATACTGGAGCTGCAGCACAACCGCATCAAGGAGATCAACGACGACCAGTTCGTGCTGTGCCCAATGCTGCGCGAGCTCAA] consensusID : consensus_4960#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence [CCGCCCACGCGTCCGCTCCCACTGGTGGTACATTTAGTGAGTGAACTGCAGCCGAAACATTGCTTGCAATGCAATGCGTCCGAAAATGCATTCTAATACCCACCCTCTCACCTACACTCACCTCACAGCCTCATAGCACTCAGCCTGCTGGCCTGGCTGGTCGATGGGCGACGGGAGGCCAAGTTCAACTGCACGCTGACCGCCAACTACTACGACTGCCTGTTCCGGGACGTGATCATACGCAGCGAGGCGGACGCGGACAGCATCTTCTTCGGCGTGCAGAACTTCAACGACACCAGCATCGCGTTCCGCGACTCCTCCATGGTGCTGCTGCCGAAGAAGATCTTCGAAACGTTCCCGGCGATCCAGTACCTGTCGAGCGACGCGTGCCACATCCAGAAGCTGCTCGGCGGCACGTTCGCGAACGCGCAGCGCCTGCAGGAGCTGCACCTGTACGACAACCGGCTTACGCGGCTGAACAACTTCGTGTTCAACGGTGCGCTGCAGCTCGAGATACTGTCGCTG] [+] EMBL BM634215 [CCGCCCACGCGTCCGCTCCCACTGGTGGTACATTTAGTGAGTGAACTGCAGCCGAAACATTGCTTGCAATGCAATGCGTCCGAAAATGCATTCTAATACCCACCCTCTCACCTACACTCACCTCACAGCCTCATAGCACTCAGCCTGCTGGCCTGGCTGGTCGATGGGCGACGGGAGGCCAAGTTCAACTGCACGCTGACCGCCAACTACTACGACTGCCTGTTCCGGGACGTGATCATACGCAGCGAGGCGGACGCGGACAGCATCTTCTTCGGCGTGCAGAACTTCAACGACACCAGCATCGCGTTCCGCGACTCCTCCATGGTGCTGCTGCCGAAGAAGATCTTCGAAACGTTCCCGGCGATCCAGTACCTGTCGAGCGACGCGTGCCACATCCAGAAGCTGCTCGGCGGCACGTTCGCGAACGCGCAGCGCCTGCAGGAGCTGCACCTGTACGACAACCGGCTTACGCGGCTGAACAACTTCGTGTTCAACGGTGCGCTGCAGCTCGAGATACTGTCGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4960#0 --------------------------------------------CCGGGGGCCTGATCCA 16 consensus_4960#1 -------------------------------------CAACCGGACTGGGGCCTGATCCA 23 consensus_4960#2 CCGCCCACGCGTCCGCTCCCACTGGTGGTACATTTAGTGAGTGAACTGCAGCCGAAACAT 60 * * *** * * consensus_4960#0 ACCATACA-TACCAGCCGTACAAGACCG-----TGATGAGCTCCCACTGGTGGTACATTT 70 consensus_4960#1 ACCATACA-TACCAGCCGTACAAGACCG-----TGATGAGCTCCCACTGGTGGTACATTT 77 consensus_4960#2 TGCTTGCAATGCAATGCGTCCGAAAATGCATTCTAATACCCACCCTCTCACC-TACACTC 119 * * ** * * * *** * * * * * ** * *** ** **** * consensus_4960#0 ACCTCA--------TAGCACTCAGCCTGCTGGCCTGGCTGGTCGATGGGCGACGGGAGGC 122 consensus_4960#1 ACCTCA--------TAGCACTCAGCCTGCTGGCCTGGCTGGTCGATGGGCGACGGGAGGC 129 consensus_4960#2 ACCTCACAGCCTCATAGCACTCAGCCTGCTGGCCTGGCTGGTCGATGGGCGACGGGAGGC 179 ****** ********************************************** consensus_4960#0 CAAGTTCAACTGCACGCTGACCGCCAACTACTACGACTGTCTGTTCCGGGACGTGATCAT 182 consensus_4960#1 CAAGTTCAACTGCACGCTGACCGCCAACTACTACGACTGCCTGTTCCGGGACGTGATCAT 189 consensus_4960#2 CAAGTTCAACTGCACGCTGACCGCCAACTACTACGACTGCCTGTTCCGGGACGTGATCAT 239 *************************************** ******************** consensus_4960#0 ACGCAGCGAGGCGGACGCGGACAGCATCTTCTTCGGCGTGCAGAACTTCAACGACACCAG 242 consensus_4960#1 ACGCAGCGAGGCGGACGCGGACAGCATCTTCTCCGGCGTGCAGAACTTCAACGACACCAG 249 consensus_4960#2 ACGCAGCGAGGCGGACGCGGACAGCATCTTCTTCGGCGTGCAGAACTTCAACGACACCAG 299 ******************************** *************************** consensus_4960#0 CATCGCATTCCGCGACTCCTCCATGGTGGTGCTGCCGAAGAAGATCTTCGAAACGTTCCC 302 consensus_4960#1 CATCGCGTTCCGCGACTCCTCCATGGTGCTGCTGCCGAAGAAGATCTTCGAAACGTTCCC 309 consensus_4960#2 CATCGCGTTCCGCGACTCCTCCATGGTGCTGCTGCCGAAGAAGATCTTCGAAACGTTCCC 359 ****** ********************* ******************************* consensus_4960#0 GGCGATCCAGTACCTGTCGAGCGACGCGTGCCAC-------------------------- 336 consensus_4960#1 GGCGATCCAGTACCTGTCGAGCGACGCGTGCCACATCCAGAAGCTGCTCGGCGGCACGTT 369 consensus_4960#2 GGCGATCCAGTACCTGTCGAGCGACGCGTGCCACATCCAGAAGCTGCTCGGCGGCACGTT 419 ********************************** consensus_4960#0 -------------------------------CTGTACGACAACCGGCTCACGCGGCTGAA 365 consensus_4960#1 CGCGAACGCGCAGCGCCTGCAGGAGCTGCACCTGTACGACAACCGGCTTACGCGGCTGAA 429 consensus_4960#2 CGCGAACGCGCAGCGCCTGCAGGAGCTGCACCTGTACGACAACCGGCTTACGCGGCTGAA 479 ***************** *********** consensus_4960#0 CAACTTCGTGTTCAACGGTGCGCTGCAGCTCGAGATACTGTCGCTGTACAACAACACGAT 425 consensus_4960#1 CAACTTCGTGTTCAACGGTGCGCTGCAGCTCGAGATACTGTCGCTGTACAACAACACGAT 489 consensus_4960#2 CAACTTCGTGTTCAACGGTGCGCTGCAGCTCGAGATACTGTCGCTG-------------- 525 ********************************************** consensus_4960#0 CAAGCAGCTGGAGGAGCACGCGTTCGATGGGCTGGGCCATCTGCGCCTGCTCTACATGGA 485 consensus_4960#1 CAAGCAGCTGGAGGAGCACGCGTTCGATGGGCTGGGCCATCTGCGCCTGCTCTACATGGA 549 consensus_4960#2 ------------------------------------------------------------ consensus_4960#0 CGAGAACCAGCTGGAGAAGCTGCCGGAGGGTCTGTTTTCCGGGCTGGAGGAGCTGCAGAT 545 consensus_4960#1 CGAGAACCAGCTGGAGAAGCTGCCGGAGGGTCTGTTTTCCGGGCTGGAGGAGCTGCAGAT 609 consensus_4960#2 ------------------------------------------------------------ consensus_4960#0 ACTGGAGCTGCAGCACAACCGCATCAAGGAGATCAACGACGACCAGTTCGTGCTGTGCCC 605 consensus_4960#1 ACTGGAGCTGCAGCACAACCGCATCAAGGAGATCAACGACGACCAGTTCGTGCTGTGCCC 669 consensus_4960#2 ------------------------------------------------------------ consensus_4960#0 GATGCTGCGCGAGCTCAACCTGAGCGCGAACATGATCAGCACGTTCAACATGTCGCAGCT 665 consensus_4960#1 AATGCTGCGCGAGCTCAA------------------------------------------ 687 consensus_4960#2 ------------------------------------------------------------ consensus_4960#0 GCAGTCGCTGAACAAGCTGGAAAACGCTCGACATTGCGCGGAACTATCTGGACGAGGTGT 725 consensus_4960#1 ------------------------------------------------------------ consensus_4960#2 ------------------------------------------------------------ consensus_4960#0 TCGTCACCAAGTACCTCCGGACGCTGAACGCGCAGGAAAACCAGATCAGCCGGATCGTGA 785 consensus_4960#1 ------------------------------------------------------------ consensus_4960#2 ------------------------------------------------------------ consensus_4960#0 TGGACCAGGGCGACTTCTTTCAGCTGACGCACCTCAACCTCTCCCGCAACAACATCGCGA 845 consensus_4960#1 ------------------------------------------------------------ consensus_4960#2 ------------------------------------------------------------ consensus_4960#0 ACATTAACAACATCTTCAAGGTTCCGCAACCTGATCGAGCTGGACGTGTCGTACAACGAG 905 consensus_4960#1 ------------------------------------------------------------ consensus_4960#2 ------------------------------------------------------------ consensus_4960#0 CTGGTAACGCTGGACTTTGTCATCTTCGCCTTCATGAAGAAC 947 consensus_4960#1 ------------------------------------------ consensus_4960#2 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||