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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1033 fasta sequence
[CCGGCCTTACTTTTACCAGGTTGTCAATTTGTTCGGGATAAGCCCACCTGTATAATAAACCCACTTTGGGCCGAACGAAGCTTCACCCTTCGCAGCCGGGGTAAATTTCGCGAGAAAAACAATGTTGTACACTGTCAAAGTGGTGGGAAACGGTTCAAAACAGAGCGAGCGAGCGAGCAAGAAAGAGAGAGCCTCACCAACAGTGAAAACAAATAATAGGTTAAATAGGTAAATTTGGAACAGTTGAACCTTCCTGCACTGTACTGCAATCGGTGTCACGGGTGGAAGAAAGTGACAAGATTCTTGTTTCCCGAAGAAGTTCTTGTGTTTTGCATCTTGTTTCCCGAAGCTGAAATCTCCTCCCGTACTATCGGTGCACGGCGATGCGCTTGTCGACTGCACCCCCGAAAACGTAAACAAAACATCTCGCCCGTACGTCAAATCGCTCAGCGCTTTCGATTGACAATCCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATAAAAAAGACTGAA--------GGAGATAGCAGGAAGTTTTCCAACCAGGCGACGGCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGTGTCACTGAAGACAGTGAAGCGTCTAGGCACAAATAGACTAAACACACACACACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAACGAGTTCTGCTCGGACGTGACGTTCATCGTCGGTGCGAGCAAGCAGCGCATCCACGCCCACAAGCTGCTGCTCGTGA]
[+] EMBL BM597127 [CCGGCCTTACTTTTACCAGGTTGTCAATTTGTTCGGGATAAGCCCACCTGTATAATAAACCCACTTTGGGCCGAACGAAGCTTCACCCTTCGCAGCCGGGGTAAATTTCGCGAGAAAAACAATGTTGTACACTGTCAAAGTGGTGGGAAACGGTTCAAAACAGAGCGAGCGAGCGAGCAAGAAAGAGAGAGCCTCACCAACAGTGAAAACAAATAATAGGTTAAATAGGTAAATTTGGAACAGTTGAACCTTCCTGCACTGTACTGCAATCGGTGTCACGGGTGGAAGAAAGTGACAAGATTCTTGTTTCCCGAAGAAGTTCTTGTGTTTTGCATCTTGTTTCCCGAAGCTGAAATCTCCTCCCGTACTATCGGTGCACGGCGATGCGCTTGTCGACTGCACCCCCGAAAACGTAAACAAAACATCTCGCCCGTACGTCAAATCGCTCAGCGCTTTCGATTGACAATCCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCAGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATAAAAAAGACTGAA GGAGATAGCAGGAAGTTTTCCAACCAGGCGACGGCATCC ]
[+] EMBL AGA282084 [ GAAAAACAATGTTGTACACTGTCAAAGTGGTGGGATACGGTTCAAAACAGAGCGAGCGAGCGAGCAAGAAAGAGAGAGCCTCACCAACAGTGAAAACAAATAATAGGTTAAATAGGTAAATTTGGAACAGTTGAACCTTCCTGCACTGTACTGCAATCGGTGTCACCGGTGGAAGAAAGTGACAAGATTCTTGTTTCCCGAAGAAGTTCTTGTGTTTTGCATCTTGTTTCCCGAAGCTGAAATCTCCTCCCGTACTATCGGTGCACGGCGATGCGCTTGTCGACTGCACCCCCGAAAACGTAAACAAAACATCTCGCCCGTACGTCAAATCGCTCAGCGCTTTCGATTGACAATCCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGGCAAGCGGg ]
[+] EMBL BX603641 [ CCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATATAAAAGACTGAAGTATCGCCGGAGGTAGCGGGAAGTTTTCCAACCAGGCGACGGCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGTGTCACTGAAGACAGTGAAGCGTCTAGGCACAAATAGACTAAACACACACACACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAACGAGTTCTGCTCGGACGTGACGTTCATCGTCGGTGCGAGCAAGCAGCGCATCCACGCCCACAAGCTGCTGCTCGTGA]
consensusID : consensus_4962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[GCAGAATCGGCACGATGGCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATATAAAAGACTGAAGTATCGCCGGAGGTAGCGGGAAGTTTTCCAACCAGGCGACGGCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGGTGTCACTGAAGACAGTGAAGCGTCTAGTGGCACAAATAGACTAAACACACACACACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAAGCGAGTTCTGCTCGGACGTGACGTTCATCGTCGGGTGCGAG]
[+] EMBL BX469845 [GCAGAATCGGCACGATGGCGCGACGTTCCGGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCACCGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGGCGGAATATAAAAGACTGAAGTATCGCCGGAGGTAGCGGGAAGTTTTCCAACCAGGCGACGGCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGGGCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGAGCAGGGGTGTCACTGAAGACAGTGAAGCGTCTAGTGGCACAAATAGACTAAACACACACACACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATCCTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATGGTCAACAAGCGAGTTCTGCTCGGACGTGACGTTCATCGTCGGGTGCGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4962#0 CCGGCCTTACTTTTACCAGGTTGTCAATTTGTTCGGGATAAGCCCACCTGTATAATAAAC 60
consensus_4962#1 ------------------------------------------------------------
consensus_4962#0 CCACTTTGGGCCGAACGAAGCTTCACCCTTCGCAGCCGGGGTAAATTTCGCGAGAAAAAC 120
consensus_4962#1 ------------------------------------------------------------
consensus_4962#0 AATGTTGTACACTGTCAAAGTGGTGGGAAACGGTTCAAAACAGAGCGAGCGAGCGAGCAA 180
consensus_4962#1 ------------------------------------------------------------
consensus_4962#0 GAAAGAGAGAGCCTCACCAACAGTGAAAACAAATAATAGGTTAAATAGGTAAATTTGGAA 240
consensus_4962#1 ------------------------------------------------------------
consensus_4962#0 CAGTTGAACCTTCCTGCACTGTACTGCAATCGGTGTCACGGGTGGAAGAAAGTGACAAGA 300
consensus_4962#1 ------------------------------------------------------------
consensus_4962#0 TTCTTGTTTCCCGAAGAAGTTCTTGTGTTTTGCATCTTGTTTCCCGAAGCTGAAATCTCC 360
consensus_4962#1 ------------------------------------------------------------
consensus_4962#0 TCCCGTACTATCGGTGCACGGCGATGCGCTTGTCGACTGCACCCCCGAAAACGTAAACAA 420
consensus_4962#1 ------------------------------------------------------------
consensus_4962#0 AACATCTCGCCCGTACGTCAAATCGCTCAGCGCTTTCGATTGACAATC-CGCGACGTTCC 479
consensus_4962#1 -----------------------------GCAGAATCGGC--ACGATGGCGCGACGTTCC 29
** *** ** ** ***********
consensus_4962#0 GGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCAC 539
consensus_4962#1 GGACGGATTGTTGCCCGCTCGGGAGACAAAGCAAGAGGTCGACACTCAACACAACACCAC 89
************************************************************
consensus_4962#0 CGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGG 599
consensus_4962#1 CGCCAGCTCGGACCGACCAACAGCCAAGCGGCCGAAGCAAGGGCCCCTGCAACCGATCGG 149
************************************************************
consensus_4962#0 CGGAATAAAAAAGACTGAAG--------GAGATAGCAGGAAGTTTTCCAACCAGGCGACG 651
consensus_4962#1 CGGAATATAAAAGACTGAAGTATCGCCGGAGGTAGCGGGAAGTTTTCCAACCAGGCGACG 209
******* ************ *** **** ***********************
consensus_4962#0 GCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGG 711
consensus_4962#1 GCATCCCTCACATTGCTGCCCCAATGTAAAGCCTGCAAACCCGGGGACGGCGTCAAACGG 269
************************************************************
consensus_4962#0 GCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGA 771
consensus_4962#1 GCAGAAACGAGCGGTGAAGTTCCCGGGAGGACCGGGCACTGCTGTGCAACTCCGCGTGGA 329
************************************************************
consensus_4962#0 GCAGGG-TGTCACTGAAGACAGTGAAGCGTCTAG--GCACAAATAGACTAAACACACACA 828
consensus_4962#1 GCAGGGGTGTCACTGAAGACAGTGAAGCGTCTAGTGGCACAAATAGACTAAACACACACA 389
****** *************************** ************************
consensus_4962#0 CACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATC 888
consensus_4962#1 CACATACACATCGAGAAGATGGCAACCGCGAGACCAGACGGCGCCATGTTCGGGGCTATC 449
************************************************************
consensus_4962#0 CTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATG 948
consensus_4962#1 CTAAGCCGCGCGCTCAGCTACGGCTCGAGCGACACAATCAGCTCCCGGCTGGAGGGCATG 509
************************************************************
consensus_4962#0 GTCAACAA-CGAGTTCTGCTCGGACGTGACGTTCATCGTCGG-TGCGAGCAAGCAGCGCA 1006
consensus_4962#1 GTCAACAAGCGAGTTCTGCTCGGACGTGACGTTCATCGTCGGGTGCGAG----------- 558
******** ********************************* ******
consensus_4962#0 TCCACGCCCACAAGCTGCTGCTCGTGA 1033
consensus_4962#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||