cluster # 4966

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Anopheles gambiae
cluster # 4966 cluster # 4966 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4966#0 length = 675 sequences # 3

consensus_4966#1 length = 622 sequences # 1

consensusID : consensus_4966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 675
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCG-----GTACAACACCGTGTCGAAAAAACGCCGGTTTGTGGCCAATGGCATGTTCCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAGAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTG-CGCTACAAGCTGATCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATG-GAGTCGGGCGCCAAGGGCTGCG-AGGT-GGTGGTGTCGGGC-AAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACTGATGATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCACCCGGCACGTGCTGCTGGCGCCAGGGTGTGCTGGGCATCAAGGTCAAAATCATGTTGCCGTGGGATCCGAATGGCAAGATCGGCCCGAAGAAGCCCCTGCCCGACAACGTGTCCGTGGTTAGTTTTTTTTTTTGTA]

[+] EMBL BM651888             [CCGCCCACGCGTCCGCCCACGCGTCCG     GTACAACACCGTGTCGAAAAAACGCCGGTTTGTGGCCAATGGCATGTTCCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAGAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTG CGCTACAAGCTGATCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATG GAGTCGGGCGCCAAGGGCTGCG AGGT GGTGGTGTCTGGC AAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACTGATGATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCACCCGGCACGT                                                                                                                              ]
[+] EMBL BM608966             [            CCGCGGACGCGTGGGAAAATGTACAACACCGTGTCGAAAAAACGCCGGTTTGTGGCCAATGGCATGTTCCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAGAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTG CGCTACAAGCTGATCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATG GAGTCGGGCGCCAAGGGCTGCGAAGGTGGGTGGTGTCGGGCAAAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACTGATGATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCACCCGGCACGTGCTGCTGGCGCCAGGGTGTGCTGGGCATCAAGGTCAAAATCATGTTGCCGTGGGATCCGAA                                                                 ]
[+] EMBL CNS09A3W             [                                                                                                            CGTGAGCTGGCCGAGGATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGCCACCCGCACCCAGAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTGACGCTACAAGCTGATCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATGAGAGTCGGGCGCCAAGGGCTGCG AGGT GGTGGTCTCGGGC AAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTTCGTCGACGGACTGATGATCCATTCCGGCGATCCGTGCAACGAAAAAGTCGACACCGCCACCCGGCACGTGCTGCT GCGCCAGGGTGTGCTGGGCATCAAGGTCAAGATCATGTTGCCGTGGGATCCGAATGGCAAGATCGGCCCGAAGAAGCCCCTGCCCGACAACGTGTCCGTGGTTAGTTTTTTTTTTTGTA]




>consensus_4966#0
CCGCCCACGCGTCCGCCCACGCGTCCGGTACAACACCGTGTCGAAAAAACGCCGGTTTGT
GGCCAATGGCATGTTCCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGGA
TGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGGC
CACCCGCACCCAGAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGACCGCCGT
CGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGTTGAGCTGTACGCCGAGAAGGTTGC
CACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTGCGCTACAAGCTGATCGGTGG
GCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATGGAGTCGGGCGCCAA
GGGCTGCGAGGTGGTGGTGTCGGGCAAGCTGCGCGGTCAGCGTGCCAAGTCGATGAAGTT
CGTCGACGGACTGATGATCCATTCCGGCGATCCGTGCAACGAGTACGTCGACACCGCCAC
CCGGCACGTGCTGCTGGCGCCAGGGTGTGCTGGGCATCAAGGTCAAAATCATGTTGCCGT
GGGATCCGAATGGCAAGATCGGCCCGAAGAAGCCCCTGCCCGACAACGTGTCCGTGGTTA
GTTTTTTTTTTTGTA

consensusID : consensus_4966#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [CCGTGACCGACCTGCTGGGCAAATGCTGTGCAGTCTTTGATTTACCGTCCAGGGTGTTGAAAGGTGTTATTGAACACAACAACAAAAATTATTCACAGAAGCAGCAGCATCAATCCCAAAAAAATCCAAATCTAACGGAAGAAAAAAAAAACGAAAACGTTGCACAAAACGGCACGTGTGGAGATTTTTTGTGTTGTATAGTACTCGTTCTACGTTCGTTTGTTTCCGATTTGAATAGTTTTGAGTTTGCTGTTTTGGTTGTCTGTAAAAAAAAACAAATAAAACAATATCTCCAATCCGTATCACGCCCATGCGCCCGAGTTTTGCCTTTAAAACAGGGTTTAAGGGTACTTAAAAACGGCTAGTGGAACAAGTAGAACGAAAAAACAACCCATCCCGCCTCCCAATTCTACCACCACCCACTATCCGGTTTTATTCCCCGTAAGACATATTTTCGGCCACGGCCCGGGGGTAACCTTCCCACAAGGGGGAGAAAAAAAAACACACACACCCCGTCACAGTCTCTCGGCGTCCAAGCAGTGTTGTCGTAAAACAACAACATCAACACACCCCTAAAACGCAAAGCAAGTTCTCTAAAGATGCTTCTCAGCCGAAATAAACT]

[+] EMBL BM590931             [CCGTGACCGACCTGCTGGGCAAATGCTGTGCAGTCTTTGATTTACCGTCCAGGGTGTTGAAAGGTGTTATTGAACACAACAACAAAAATTATTCACAGAAGCAGCAGCATCAATCCCAAAAAAATCCAAATCTAACGGAAGAAAAAAAAAACGAAAACGTTGCACAAAACGGCACGTGTGGAGATTTTTTGTGTTGTATAGTACTCGTTCTACGTTCGTTTGTTTCCGATTTGAATAGTTTTGAGTTTGCTGTTTTGGTTGTCTGTAAAAAAAAACAAATAAAACAATATCTCCAATCCGTATCACGCCCATGCGCCCGAGTTTTGCCTTTAAAACAGGGTTTAAGGGTACTTAAAAACGGCTAGTGGAACAAGTAGAACGAAAAAACAACCCATCCCGCCTCCCAATTCTACCACCACCCACTATCCGGTTTTATTCCCCGTAAGACATATTTTCGGCCACGGCCCGGGGGTAACCTTCCCACAAGGGGGAGAAAAAAAAACACACACACCCCGTCACAGTCTCTCGGCGTCCAAGCAGTGTTGTCGTAAAACAACAACATCAACACACCCCTAAAACGCAAAGCAAGTTCTCTAAAGATGCTTCTCAGCCGAAATAAACT]




>consensus_4966#1
CCGTGACCGACCTGCTGGGCAAATGCTGTGCAGTCTTTGATTTACCGTCCAGGGTGTTGA
AAGGTGTTATTGAACACAACAACAAAAATTATTCACAGAAGCAGCAGCATCAATCCCAAA
AAAATCCAAATCTAACGGAAGAAAAAAAAAACGAAAACGTTGCACAAAACGGCACGTGTG
GAGATTTTTTGTGTTGTATAGTACTCGTTCTACGTTCGTTTGTTTCCGATTTGAATAGTT
TTGAGTTTGCTGTTTTGGTTGTCTGTAAAAAAAAACAAATAAAACAATATCTCCAATCCG
TATCACGCCCATGCGCCCGAGTTTTGCCTTTAAAACAGGGTTTAAGGGTACTTAAAAACG
GCTAGTGGAACAAGTAGAACGAAAAAACAACCCATCCCGCCTCCCAATTCTACCACCACC
CACTATCCGGTTTTATTCCCCGTAAGACATATTTTCGGCCACGGCCCGGGGGTAACCTTC
CCACAAGGGGGAGAAAAAAAAACACACACACCCCGTCACAGTCTCTCGGCGTCCAAGCAG
TGTTGTCGTAAAACAACAACATCAACACACCCCTAAAACGCAAAGCAAGTTCTCTAAAGA
TGCTTCTCAGCCGAAATAAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4966#0      CCGCCCACGCGTCCG-CCCACGCGTCCGGTACAACACCGTGTCGAAAAAACGCCGGTTTG 59
consensus_4966#1      ------CCGTGACCGACCTGCTGGGCAAATGCTGTGCAGTCTTTGATTTACCGTCCAGGG 54
                             ** * *** **  *  * *   * *    * ** *   *   **        *

consensus_4966#0      TGGCCAATGGCATGTTCCATGCCGAACTCAACGAGTTCCTGACTCGTGAGCTGGCCGAGG 119
consensus_4966#1      TGTTGAAAGGTGT------TATTGAACACAACAA---CAAAAATTATTCACAGAAGCAGC 105
                      **   ** **  *      *   **** **** *   *   * *  *   * *    ** 

consensus_4966#0      ATGGATACTCCGGCGTGGAGGTCCGTGTTACGCCGACCCGCACAGAAATCATCATCATGG 179
consensus_4966#1      AGCATCAATCC--CAAAAAAATCCAAATCTAACGGAAGAAAAAAAAAACGAAAACGTTGC 163
                      *     * ***  *    *  ***   *    * **     * * ***  *  *   ** 

consensus_4966#0      CCAC--CCGCACCCA---GAACGTGCTGGGTGAGAAGGGACGCCGCATCCGTGAGCTGAC 234
consensus_4966#1      ACAAAACGGCACGTGTGGAGATTTTTTGTGTTGTATAGTACTCGTTCTACGTTCGTTTGT 223
                       **   * ****        *  *  ** **   *  * ** *    * ***  * *   

consensus_4966#0      CGCCGTCGTCCGCAAGCGTTTCGGATTCGCTCCCGGCAGCGT-TGAGCTGTACGCCGAGA 293
consensus_4966#1      TTCCG--ATTTG-AATAGTTTTGAGTTTGCTGTTTTGGTTGTCTGTAAAAAAAAACAAAT 280
                        ***   *  * **  **** *  ** ***         ** **      *   * *  

consensus_4966#0      AGGTTGCCACCCGCGGTCTGTGCGCGATCGCTCAGGCGGAATCGCTGCGCTACAAGCTGA 353
consensus_4966#1      AAAACAATATCTCCAATCCGTATCACGCCCATGCGCCCGAGTT-TTGCCTTTAAAACAG- 338
                      *       * *  *  ** **       *  *  * * ** *   ***  *  ** * * 

consensus_4966#0      TCGGTGGGCTGGCCGTGCGCCGCGCCTGCTACGGTGTGCTGCGCTTCATCATGGAGTCGG 413
consensus_4966#1      -----GGTTTAAGGGTACTTAAAAACGGCTA--GTGGAACAAGTAGAACGAAAAAACAAC 391
                           **  *    ** *       * ****  ***      *    *  *   *     

consensus_4966#0      GCGCCAAGGGCTGCGAGGTGGTGGTGTCGGGCAAGCTGCGCGGTCAGCGTGCCAAGTCGA 473
consensus_4966#1      CCATCCCG--CCTCCCAATTCTACCACCACCCA--CTATCCGGTTTTATTCCCCGTAAGA 447
                       *  *  *  *  *    *  *     *   **  **   ****     * **     **

consensus_4966#0      TGAAGTT-CGTCGACGGACTGATGAT--CCATTCCGGCGATCCGTGCAACGAGTACGTCG 530
consensus_4966#1      CATATTTTCGGCCACGGCCCGGGGGTAACCTTCCCACAAGGGGGAGAAAAAAAAACACAC 507
                         * ** ** * **** * *  * *  ** * **        * * **  *  **    

consensus_4966#0      ACACCGCCACCCGGCACGTGCTGCTGGCG-CCAGGGTGTGCTGGGCATCAAGGTCAAAAT 589
consensus_4966#1      ACACC-----CCGTCACAGTCTCTCGGCGTCCAAGCAGTGTTGTCGTAAAACAACAACAT 562
                      *****     *** ***   **   **** *** *  *** **      **   *** **

consensus_4966#0      CATGTTGCCGTGGGATCCGAATGGCAAGATCGGCCCGAAGAAGCCCCTGCCCGACAACGT 649
consensus_4966#1      CAACACACCCCTAAAAC-GCAAAGCAAGTTC--TCTAAAGATGCTTCTCAGCCGAAATAA 619
                      **     **     * * * *  ***** **   *  **** **  **   *   **   

consensus_4966#0      GTCCGTGGTTAGTTTTTTTTTTTGTA 675
consensus_4966#1      ACT----------------------- 622