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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1071 fasta sequence
[ACCTGCACCTTGCCCGCATTTTCGCTTCTAGCCATTGTGTTGTTCTATTGTTTTGCTTGCCGCACACCAACGCAACCACTAAAGCTTCAAACGTTCGATTCCGATGGCCGACTTTGATTTACCGCGAATGCGTTCGCTCGCACCGGAGCAGGACCCCGCCGTGCCGATTGCGTACGAGCACCGGCGATCACCCCCCATGGTCACCCACCACCAGGAAATGGATCTAATCGAAGTGCTCTGGAAGCAGGATGTCGATCTTGGCTTTACGCTCGCGAATGCGGGCCTTTCCAACGCACCGGAAGGGTCCAGCTCAACGTCAGCGGACACAGCATCTGCCACCGGCATAAAGTGCGACACCGAGGACGATTTGGAAAAGTTGAAGGTTTTGCTGGAGATAAAAAATGATAAGAATGCCGACTACGAAAAGAACCCCAATGCAGCGGACGAGAGCAGTCTGGTCGATCCTTGGGCANGACTGTCCTACACAATCGATACGGAAACAGGCGAGTACGTGCTGAACAGCTCGGACATAGATAACAGCTTGCCACCACCGTTGGCGGATCTGTTCCTGGAGGAAGGCCTAACGCTACCGGACCTTGGCGAAACAGTGGTTGACACCATTGCCGAAATCAAGCCTGACGACAGTGAGAGCGATCTGTCCGGACCGCCAGTCCAGGAGGAGCAGGAAATTGCCGAGGTAAAGCGCATCGAACAGGAGCTGCAGCAGGTGTCGGTGGGCGAGATTTGTCTCGGTGGTGGCAGTCGTGCTTCCGGCACGTCGAGTGCCGATCAGAACAGCAACTGCGAAGATACCGGCGAGATCCTCGACACGGAAACCGATTCCGCAGCCGCAGCGAACACGACGTCGTCCGACGCCGAAGGTCTCGAGGCCGAGCCGGTGACCGATGATCTAAAGGATCTGCTCTGCGACATGATGATACAAACGTCGTCCCACTTTCAACACACGCGCCAGAACACGCAAGGCTACGGCCATGGCGCCATGGGCAGCTTCCGACAAACGGCGACCGGTGGCGCTGGTTACCATCACCATCACCATCATCACCACCACCA]
[+] EMBL AGA282377 [ACCTGCACCTTGCCCGCATTTTCGCTTCTAGCCATTGTGTTGTTCTATTGTTTTGCTTGCCGCACACCAACGCAACCACTAAAGCTTCAAACGTTCGATTCCGATGGCCGACTTTGATTTACCGCGAATGCGTTCGCTCGCACCGGAGCAGGACCCCGCCGTGCCGATTGCGTACGAGCACCGGCGATCACCCCCCATGGTCACCCACCACCAGGAAATGGATCTAATCGAAGTGCTCTGGAAGCAGGATGTCGATCTTGGCTTTACGCTCGCGAATGCGGGCCTTTCCAACGCACCGGAAGGGTCCAGCTCAACGTCAGCGGACACAGCATCTGCCACCGGCATAAAGTGCGACACCGAGGACGATTTGGAAAAGTTGAAGGTTTTGCTGGAGATAAAAAATGATAAGAATGCCGACTACGAAAAGAACCCCAATGCAGCGGACGAGAGCAGTCTGGTCGATCCTTGGGCANGACTGTCCTACACAATCGATACG ]
[+] EMBL AGA282403 [ AAAAGAACCCCAATGCAGCGGACGAGAGCAGTCTGGTCGATCCTTGGGCAGGACTGTCCTACACAATCGATACGGAAACAGGCGAGTACGTGCTGAACAGCTCGGACATAGATAACAGCTTGCCACCACCGTTGGCGGATCTGTTCCTGGAGGAAGGCCTAACGCTACCGGACCTTGGCGAAACAGTGGTTGACACCATTGCCGAAATCAAGCCTGACGACAGTGAGAGCGATCTGTCCGGACCGCCAGTCCAGGAGGAGCAGGAAATTGCCGAGGTAAAGCGCATCGAACAGGAGCTGCAGCAGGTGTCGGTGGGCGAGATTTGTCTCGGTGGTGGCAGTCGTGCTTCCGGCACGTCGAGTGCCGATCAGAACAGCAACTGCGAAGATACCGGCGAGATCCTCGACACGGAAACCGATTCCGCAGCCGCAGCGA ]
[+] EMBL AGA282853 [ ACAGCAACTGCGAAGATACCGGCGAGATCCTCGACACGGAAACCGATTCCGCAGCCGCAGCGAACACGACGTCGTCCGACGCCGAAGGTCTCGAGGCCGAGCCGGTGACCGATGATCTAAAGGATCTGCTCTGCGACATGATGATACAAACGTCGTCCCACTTTCAACACACGCGCCAGAACACGCAAGGCTACGGCCATGGCGCCATGGGCAGCTTCCGACAAACGGCGACCGGTGGCGCTGGTTACCATCACCATCACCATCATCACCACCACCA]
consensusID : consensus_4977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 774 fasta sequence
[TCGTGTGTCCGAAAAACCGACCGCAACCTGCACCTTGCCCGCATTTTCGCTTCTAGCCATTGTGTTGTTCTATTGTTTTGCTTGCCGCACACCAACGCAACCACTAAAGCTTCAAACGTTCGATCCCGATGGCCGACTTTGATTTACCGCGAATGCGTTCGCTCGCACCGGAGCAGGACCCCGCCGTGCCGATTGCGTACGAGCACCGGCGATCACCCCCCATGGTCACCCACCACCAGAAATGCACGCAATTTGTTTTCATGGAATCGGCAGCCTAGAATAAAATGTCTCAATGTGCTCGTTTGCATCACCTGTTGCCTTTCGTCCGCTACCGGTACGTCACGTTTGACAGTAAATGACCGGTTTTGTTTACCGATTGAAACGTTCGCTCTTGCCTGTTAGCGATTTTAGACAATTGTTTTCGCATTTCTACTAATTCTGAGCAATTTTCTGAATATTACTGAACCACAAATAGTGAAAATAATAAGCAAATCCATATGATTTGCTGGCACGACCACTGTCGGTTAGCAACTGTCATATCAGCGATTCTTTTTTTCAAACACGCTCCAGCCAGTATTTGTGCAACCCGTTGCCACACAGCCCAAAAACCGCAAAAGCTGATGCAATACACAGCACCCGTTCTAGAACAATCGCGTCTAGTTTGTTTGTTTGCGGNTTATGCCAATGCCTCTGCCGTTTCATAAAAGTTGCGTATATTGCGTGNCCATCCCTTACAACAGTATTAGCAGCGCAGTTTGGTACGCGCNAATGCTT]
[+] EMBL BX621939 [TCGTGTGTCCGAAAAACCGACCGCAACCTGCACCTTGCCCGCATTTTCGCTTCTAGCCATTGTGTTGTTCTATTGTTTTGCTTGCCGCACACCAACGCAACCACTAAAGCTTCAAACGTTCGATCCCGATGGCCGACTTTGATTTACCGCGAATGCGTTCGCTCGCACCGGAGCAGGACCCCGCCGTGCCGATTGCGTACGAGCACCGGCGATCACCCCCCATGGTCACCCACCACCAGAAATGCACGCAATTTGTTTTCATGGAATCGGCAGCCTAGAATAAAATGTCTCAATGTGCTCGTTTGCATCACCTGTTGCCTTTCGTCCGCTACCGGTACGTCACGTTTGACAGTAAATGACCGGTTTTGTTTACCGATTGAAACGTTCGCTCTTGCCTGTTAGCGATTTTAGACAATTGTTTTCGCATTTCTACTAATTCTGAGCAATTTTCTGAATATTACTGAACCACAAATAGTGAAAATAATAAGCAAATCCATATGATTTGCTGGCACGACCACTGTCGGTTAGCAACTGTCATATCAGCGATTCTTTTTTTCAAACACGCTCCAGCCAGTATTTGTGCAACCCGTTGCCACACAGCCCAAAAACCGCAAAAGCTGATGCAATACACAGCACCCGTTCTAGAACAATCGCGTCTAGTTTGTTTGTTTGCGGNTTATGCCAATGCCTCTGCCGTTTCATAAAAGTTGCGTATATTGCGTGNCCATCCCTTACAACAGTATTAGCAGCGCAGTTTGGTACGCGCNAATGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4977#0 -------------------------ACCTGCACCTTGCCCGCATTTTCGCTTCTAGCCAT 35
consensus_4977#1 TCGTGTGTCCGAAAAACCGACCGCAACCTGCACCTTGCCCGCATTTTCGCTTCTAGCCAT 60
***********************************
consensus_4977#0 TGTGTTGTTCTATTGTTTTGCTTGCCGCACACCAACGCAACCACTAAAGCTTCAAACGTT 95
consensus_4977#1 TGTGTTGTTCTATTGTTTTGCTTGCCGCACACCAACGCAACCACTAAAGCTTCAAACGTT 120
************************************************************
consensus_4977#0 CGATTCCGATGGCCGACTTTGATTTACCGCGAATGCGTTCGCTCGCACCGGAGCAGGACC 155
consensus_4977#1 CGATCCCGATGGCCGACTTTGATTTACCGCGAATGCGTTCGCTCGCACCGGAGCAGGACC 180
**** *******************************************************
consensus_4977#0 CCGCCGTGCCGATTGCGTACGAGCACCGGCGATCACCCCCCATGGTCACCCACCACCAGG 215
consensus_4977#1 CCGCCGTGCCGATTGCGTACGAGCACCGGCGATCACCCCCCATGGTCACCCACCACCAG- 239
***********************************************************
consensus_4977#0 AAATGGATCTAATCGAAGTGCTCTGGAAGCAGGATGTCGATCTTGGCTTTACGCTCGCGA 275
consensus_4977#1 AAATGCACGCAATTT--GTTTTCATGGAATCGG----CAGCCTAGAATAAAATGTCTC-A 292
***** * *** ** ** * * ** * ** * * * ** * *
consensus_4977#0 ATGCGGGCCTTTCCAACGCACCGGAAGGGTCCAGCTCAACGTCAGCGGACACAGCATCTG 335
consensus_4977#1 ATGTGCTCGTTTGCAT--CACCTGTTGCCTTTCGTCCGCTACCGGT--ACGTCACGTTTG 348
*** * * *** ** **** * * * * * * * ** * * **
consensus_4977#0 CCACCGGCATAAAGTGCGACACCGAGGACGATTTGGAAAAGTTGAAGGTTTTGCTGGAGA 395
consensus_4977#1 ACAGTA----AATGACCGGTTTTGTTTACCGATTGAAACGTTCGC---TCTTGCC----- 396
** ** * ** * ** *** ** * * * ****
consensus_4977#0 TAAAAAATGATAAGAATGCCGACTACGAAAAGAACCCCAATGCAGCGGACGAGAGCAGTC 455
consensus_4977#1 -------TGTTAGCGATTTTAG--ACAATTGTTTTCGCATTTCTACTAAT--------TC 439
** ** ** ** * * ** * * * * **
consensus_4977#0 TGGTCGATCCT-TGGGCANGACTGTCCTACACAATCGATACGGAAACAGGCGAGTACGTG 514
consensus_4977#1 TGAGCAATTTTCTGAATATTACTGAACCACA-AATAGTGAAAATAATAAGCAAATCCATA 498
** * ** * ** * **** * *** *** * * ** * ** * * * *
consensus_4977#0 CTGAACAGCTCGGAC-ATAGATAACAGCTTGCCACCACCGT--TGGCGGATCTGTTCCTG 571
consensus_4977#1 -TGATTTGCTGGCACGACCACTGTCGGTTAGCAACTGTCATATCAGCGATTCTTTTTTTC 557
*** *** * ** * * * * * ** ** * * *** *** ** *
consensus_4977#0 GAGGAAGGCCTAACGCTACCGGACCTTGGCGAAACAGTGGTTGACACCATTGCCGAAATC 631
consensus_4977#1 AAACACGCTCCAGCC------AGTATTTGTGCAAC-----------CCGTTGCCACAC-- 598
* * * * * * ** * * *** ** ***** *
consensus_4977#0 AAGCCTGACGACAGTGAGAGC-GAT-CTGTCCGGACCGCCAGTCCAGGAGGAGCAGGAAA 689
consensus_4977#1 -AGCCCAAAAACCGCAAAAGCTGATGCAATACACAGCACCCGTTCTAGAACAATCG---- 653
**** * ** * * *** *** * * * * * ** ** * ** * *
consensus_4977#0 TTGCCGAGGTAAAGCGCATCGAACAGGAGCTGCAGCAGGTGTCGGTGGGCGAGATTTGTC 749
consensus_4977#1 -CGTCTAGTTTGTTTGTTTGCGGNTTATGCCAATGCCTCTGCCGTTTCATAAAAGTTGCG 712
* * ** * * * ** ** ** ** * * * ***
consensus_4977#0 TCGGTGGTGGCAGTCGTGCTTCCGGCACGTCGAGTGCCGATCAGAACAGCAACTGCGAAG 809
consensus_4977#1 TATATTGCGTGNCCATCCCTTACAACAGTATTAGCAGCG--CAGTTTGGTACGCGCNAAT 770
* * * * *** * ** ** ** *** * * ** **
consensus_4977#0 ATACCGGCGAGATCCTCGACACGGAAACCGATTCCGCAGCCGCAGCGAACACGACGTCGT 869
consensus_4977#1 GCTT-------------------------------------------------------- 774
consensus_4977#0 CCGACGCCGAAGGTCTCGAGGCCGAGCCGGTGACCGATGATCTAAAGGATCTGCTCTGCG 929
consensus_4977#1 ------------------------------------------------------------
consensus_4977#0 ACATGATGATACAAACGTCGTCCCACTTTCAACACACGCGCCAGAACACGCAAGGCTACG 989
consensus_4977#1 ------------------------------------------------------------
consensus_4977#0 GCCATGGCGCCATGGGCAGCTTCCGACAAACGGCGACCGGTGGCGCTGGTTACCATCACC 1049
consensus_4977#1 ------------------------------------------------------------
consensus_4977#0 ATCACCATCATCACCACCACCA 1071
consensus_4977#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||