These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 910 fasta sequence [CGCGTCTGGCTCTCCTGACGGTCTAGGCACAGCTCCTGCTCTCTTCACGGTCCAGGCATAGCCGCCGGCGAACGAATTAGAGACATTGTAACCGATTAGATAAGCACTAGTACTATTTGTGTAACGTTCACTTTTTTGCCACTTGATTCCCAAAATGTTACAATATCTTTCCTTTCACAGTTTTCAATTTGAATCACGCGGTATGCAATTACGAGAGTAAATCTAGTTTACTGGAAGTAAGTTTTCGTGTGTCTAAGTTGGTAACATGCAAGTGCTCGAGCGTGTGCCTATTGACGTGTGCTCGCATTGGGTGCTCGAATTAGGGTGCTCGACGGATTTCAATTGGCGGTTGATGTCAGCTCCCAACTGTGGTAAGGCCATGACATGGTCGCCACACACTTTTTGTTCCGTGTGGGTTTTGTGTACCGGAATGGCGAAGCGTTTTTGTTGTTTGTACCAATACCCGGTCGGTTTTCTCTTGTATGAAGCACACATTGTTTAACACACGGCCTTTTTTCGTCCGGACCATGAATGACTTCTTGATTATCGCAGGTCTGCATCCTCTACCAAAGTTCTGCTCGAGACGCACTTTCACTTGTTACGTGTCGTCTCGTACATGAAGATTACATGCAATCTCTTTGGTTTATGATAAGTTATACCCTGCAAATCGGTTGTAGCACCCAAATCAGTAAGTAAGTGAGTTAGTAAGTAAGTAAGTAATTGAAATCAAAACTAAAGGAAAACACGCAAAACTGTAATACAACAAAACCGGTGTACACACGAACTCCATATGAAACATTGCTTCTTCTTCTTCTTCGCCGTGGCACATGCGCGCGTGCGGCTAGAATACTCCGCCTATACAACGCAATGAGCAATGTAACATGTAGTAGTTAATTGTACTAAGCGCATT] [+] EMBL AGA282536 [CGCGTCTGGCTCTCCTGACGGTCTAGGCACAGCTCCTGCTCTCTTCACGGTCCAGGCATAGCCGCCGGCGAACGAATTAGAGACATTGTAACCGATTAGATAAGCACTAGTACTATTTGTGTAACGTTCACTTTTTTGCCACTTGATTCCCAAAATGTTACAATATCTTTCCTTTCACAGTTTTCAATTTGAATCACGCGGTATGCAATTACGAGAGTAAATCTAGTTTACTGGAAGTAAGTTTTCGTGTGTCTAAGTTGGTAACATGCAAGTGCTCGAGCGTGTGCCTATTGACGTGTGCTCGCATTGGGTGCTCGAATTAGGGTGCTCGACGGATTTCAATTGGCGGTTGATGTCAGCTCCCAACTGTGGTAAGGCCATGACATGGTCGCCACACACTTTTTGTTCCGTGTGGGTTTTGTGTACCGGAATGGCGAAGCGTTTTTG ] [+] EMBL BX628160 [ gGTTTTCGTGTGTCTAAGTTGGTAACATGCAAGTGCTCGAGCGTGTGCCTATTGACGTGTGCTCGCATTGGGTGCTCGAATTAGGGTGCTCGACGGATTTCAATTGGCGGTTGATGTCAGCTCCCAACTGTGGTAAGGCCATGACATGGTCGCCACACACTTTTTGTTCCGTGTGGGTTTTGTGTACCGGAATGGCGAAGCGTTTTTGTTGTTTGTACCAATACCCGGTCGGTTTTCTCTTGTATGAAGCACACATTGTTTAACACACGGCCTTTTTTCGTCCGGACCATGAATGACTTCTTGATTATCGCAGGTCTGCATCCTCTACCAAAGTTCTGCTCGAGACGCACTTTCACTTGTTACGTGTCGTCTCGTACATGAAGATTACATGCAATCTCTTTGGTTTATGATAAGTTATACCCTGCAAATCGGTTGTAGCACCCAAATCAGTAAGTAAGTGAGTTAGTAAGTAAGTAAGTAATTGAAATCAAAACTAAAGGAAAACACGCAAAACTGTAATACAACAAAACCGGTGTACACACGAACTCCATATGAAACATTGCTTCTTCTTCTTCTTCGCCGTGGCACATGCGCGCGTGCGGCTAGAATACTCCGCCTATACAACGCAATGAGCAATGTAACATGTAGTAGTTAATTGTACTAAGCGCATT] consensusID : consensus_4981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [TTCGCGTCTGGCTCTCCTGACGGTCTAGGCACAGCTCCTGCTCTCTTCACGGTCCAGGCATAGCCGCCGGCGAACGAACTAGAGACATTGTAACTGATTAAATAAGCACTAGTACTGTTTGTGTAACGTTGACTTTTTTGCCACTTGTTTGGCTACACTGGTGGACATAAAAATAGGAAAAAAATTTTGGATGTGGAATAAAGGATGTGCAAGTTCTACCGTGGCCTGCGTTGAGTCCTGACCTCAACCCGATTGAAAATCTGTGGTCAACTCGCAAGCATCAGCTAAAGAACCAGCCTGCACGTTCAGCCGATGATCTATGGACACGCTGCAAGGTTATGTGGAAACGCATACCCAGAAGCGAATGCCGTAAGCTCATCGGCGATATGGCCAAACGCTGTCAGGAAGTGATAGCGATTAACGGTCACCACATTGACCGTTAGAATGTGTTTTCGCTCTGTGGAACACCGCAACACCTCCTCCCAACAACCACTTAAACAGTCCTTTTCAGGGCTACCAAATATTTCTGACAAGAACTATGTCTTTCGGTCACAGAAAAAAGTTCCTATTTTTGTGTCCACCAGTGTACCTTGTGTGGGTGGACCATTTTTTTATTTGATTCCCAAAATGTTACAATGTCTTTCCTTTCACAGTTTTCAATTTGAATCACGCGGTATGCAATTACGAGAGTAAATCT] [+] EMBL BX623530 [TTCGCGTCTGGCTCTCCTGACGGTCTAGGCACAGCTCCTGCTCTCTTCACGGTCCAGGCATAGCCGCCGGCGAACGAACTAGAGACATTGTAACTGATTAAATAAGCACTAGTACTGTTTGTGTAACGTTGACTTTTTTGCCACTTGTTTGGCTACACTGGTGGACATAAAAATAGGAAAAAAATTTTGGATGTGGAATAAAGGATGTGCAAGTTCTACCGTGGCCTGCGTTGAGTCCTGACCTCAACCCGATTGAAAATCTGTGGTCAACTCGCAAGCATCAGCTAAAGAACCAGCCTGCACGTTCAGCCGATGATCTATGGACACGCTGCAAGGTTATGTGGAAACGCATACCCAGAAGCGAATGCCGTAAGCTCATCGGCGATATGGCCAAACGCTGTCAGGAAGTGATAGCGATTAACGGTCACCACATTGACCGTTAGAATGTGTTTTCGCTCTGTGGAACACCGCAACACCTCCTCCCAACAACCACTTAAACAGTCCTTTTCAGGGCTACCAAATATTTCTGACAAGAACTATGTCTTTCGGTCACAGAAAAAAGTTCCTATTTTTGTGTCCACCAGTGTACCTTGTGTGGGTGGACCATTTTTTTATTTGATTCCCAAAATGTTACAATGTCTTTCCTTTCACAGTTTTCAATTTGAATCACGCGGTATGCAATTACGAGAGTAAATCT] consensusID : consensus_4981#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCGATTATATACCTCAATGGACCATTTCTTGATTAGAGATACCAAGATAATAATTTTACAATCACTACAAGATTGTCACGCGGATTTTATCCATCTGGAAGATGAATTATATCGATGAATCTAGCAAAACGTAAAAATGACGCCAATTAATATGCTTAACATATCATAACTGCGAATTGTATCGATAATCGGCAAGCAAATGGGGTGCTTGAATTGCACAGCGCTGGCAAATCCTATGTATCAAAATCGTCTGCATTGTTGGTTGTATTGTACTGCGGATGAATGAAGATCTTTTCGAAAAAGTTCTTCAACTAGAAATTATTAAATCAATTTAATATCTATTACCTCTCCTACCTACACAATTCTATATCAACGCTTCAGTTGGCCCTGGAAGCATGCTGAACTGGTCTCAAATTCACTCGTTCATTTCATATCCTGCTGGAGTACGAAGAATGTCGTTCGAGTTGCCTCACATTTTTTACTATTCCACAATCAATTTCAGCACGCTGTTCATTGTCTACAGACAGAAGGGTTGCACGTACACCTGTGTGCATAAAAATAGTAACTGCTTAAGAATCGACCACAGATTTTCTATCGGGTTGAGGTCAGGACTCAACGCAG] [+] EMBL BM648220 [CCGATTATATACCTCAATGGACCATTTCTTGATTAGAGATACCAAGATAATAATTTTACAATCACTACAAGATTGTCACGCGGATTTTATCCATCTGGAAGATGAATTATATCGATGAATCTAGCAAAACGTAAAAATGACGCCAATTAATATGCTTAACATATCATAACTGCGAATTGTATCGATAATCGGCAAGCAAATGGGGTGCTTGAATTGCACAGCGCTGGCAAATCCTATGTATCAAAATCGTCTGCATTGTTGGTTGTATTGTACTGCGGATGAATGAAGATCTTTTCGAAAAAGTTCTTCAACTAGAAATTATTAAATCAATTTAATATCTATTACCTCTCCTACCTACACAATTCTATATCAACGCTTCAGTTGGCCCTGGAAGCATGCTGAACTGGTCTCAAATTCACTCGTTCATTTCATATCCTGCTGGAGTACGAAGAATGTCGTTCGAGTTGCCTCACATTTTTTACTATTCCACAATCAATTTCAGCACGCTGTTCATTGTCTACAGACAGAAGGGTTGCACGTACACCTGTGTGCATAAAAATAGTAACTGCTTAAGAATCGACCACAGATTTTCTATCGGGTTGAGGTCAGGACTCAACGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4981#0 --CGCGTCTGGCTCTCCTGACGGTCTAGGCACAGCTCCTGCTCTCTTCACGGTCCAGGCA 58 consensus_4981#1 TTCGCGTCTGGCTCTCCTGACGGTCTAGGCACAGCTCCTGCTCTCTTCACGGTCCAGGCA 60 consensus_4981#2 ------------------------------------------------------------ consensus_4981#0 TAGCCGCCGGCGAACGAATTAGAGACATTGTAACCGATTAGATAAGCACTAGTACTATTT 118 consensus_4981#1 TAGCCGCCGGCGAACGAACTAGAGACATTGTAACTGATTAAATAAGCACTAGTACTGTTT 120 consensus_4981#2 --------------CCGATTATATACCTC--AATGGACCATTTCTTGATTAGAGATACCA 44 * * ** * ** * ** ** * * * *** * consensus_4981#0 GTGTAACGTTCACTTTTTTGCCACTTGATTC-CCAAAATGTTACA-ATATCTTTCCTTTC 176 consensus_4981#1 GTGTAACGTTGACTTTTTTGCCACTTGTTTGGCTACACTGGTGGACATAAAAATAGGAAA 180 consensus_4981#2 AGATAATAATTTTACAATCACTACAAGATTG-TCACGCGGATTTT-ATCCATCTGGAAGA 102 *** * * * ** * ** * * * ** * consensus_4981#0 ACAGTTTTCAATTTGAATCACGCGGTATGCAATTACGAGAGTAAATCTAGTTTA--CTGG 234 consensus_4981#1 AAAATTTTGGATGTGGAATAAAGGATGTGCAAGTTCTACCGTGGCCTGCGTTGAGTCCTG 240 consensus_4981#2 TGAATTATATCGATGAATCTAGCAAAACGTAAAAATGACGCCAATTAATATGCTTAACAT 162 * ** * ** * * ** * * consensus_4981#0 AAGTAAGTTTTCGTGTGTCTAAGTTGGTAACATGCAAGTGCTCGAGCGTGTGCCTATTGA 294 consensus_4981#1 ACCTCAACCCGATTGAAAATCTGTGGTCAACTCGCAAGCATCAGCTAAAGAACC----AG 296 consensus_4981#2 ATCATAACTGCGAATTGTATCGATAATCGGCAAGCAAATGG-GGTGCTTGAATTGCACAG 221 * * * * * **** * * consensus_4981#0 CGTGTGCTCGCATTGGGTGCTCGAATTAGGGTGCTCGACGGATTTCAATTGGCGGTTGAT 354 consensus_4981#1 CCTGCACGTTCAGCCGATGATCTAT---GGACACGCTGCAAGGTT-ATGTGGAAACGCAT 352 consensus_4981#2 CGCTGGCAAATCCTATGTA-TCAAAATCGTCTGCATTGTTGGTTGTATTGTACTGCGGAT 280 * * * ** * * * * * ** consensus_4981#0 GTCAGCTCCCAACTGTGGTAAGGCCAT-GACATGGTCGCCACACACTTTTTGTTCCGTGT 413 consensus_4981#1 ACCCAGAAGCGAATGCCGTAAGCTCATCGGCGATATGGCCAAACGCTGTCAG----GAAG 408 consensus_4981#2 GAATGAAGATCTTTTCGAAAAAGTTCT-------TCAACTAGAAATTATTAAATC-AATT 332 * ** * * * * * * consensus_4981#0 GGGTTTTGTGTACCGGAATGGCGAAGCGTTTTTGTTGTTTGTACCAATACCCGGTC-GGT 472 consensus_4981#1 TGATAGCGATTAACGGTC------ACCACATTGACCGTTAGAATGTGTTTTCGCTC-TGT 461 consensus_4981#2 TAATATCTATTACCTCTCCTACCTACACAATTCTATATCAACGCTTCAGTTGGCCCTGGA 392 * ** * * ** * * * * consensus_4981#0 TTTCTCTTGTATGAAGCACACATTGTTTAACACACGGCCTTTTTTCGTCCGGACCATGAA 532 consensus_4981#1 GGAACACCGCA-ACACCTCCTCCCAACAACCACTTAAACAGTCCTTTTCAGGGCTACCAA 520 consensus_4981#2 AGCATGCTGAACTGGTCTCAAATTCACT--CGTTCATTTCATATCCTGCTGGAGTACGAA 450 * * * * * * * ** * ** consensus_4981#0 TGACTTCT--TGATTATCGCAGGTCTGCATCCTCTACCAAAGTTCTGCTCGAGACGCACT 590 consensus_4981#1 ATATTTCTGACAAGAACTATGTCTTTCGGTCACAGAAAAAAGTTCCTATTTTTGTGTCCA 580 consensus_4981#2 GAATGTCGTTCGAGTTGCCTCACATTTTTTACTATTCCACAATCAATTTCAGCACGC--- 507 * ** * * * * * * * * consensus_4981#0 TTCACTTGTTACGTGTCGTCTCGTACATGAAGATTACATGCAATCTCTTTGGT-TTATGA 649 consensus_4981#1 CCAGTGTACCTTGTGTGG----GTGGACCATTTTTTTATTTGATTCCCAAAATGTTACAA 636 consensus_4981#2 --TGTTCATTGTCTACAG------ACAGAAGGGTTGCACGTACACCTGTGTGCATAAAAA 559 * * * * ** * * * * consensus_4981#0 TAAGTTATACCCTGCAAATCGGTTGTAGCACCCAAATCAGTAAGTAAGTGAGTTAGTAAG 709 consensus_4981#1 T--GTCTTTCCTTTCA---CAGTTTTCA-ATTTGAATCACGCGGTATGCAATTACGAGAG 690 consensus_4981#2 TA-GTAACTGCTTAAGAATCGACCACAGATTTTCTATCGGGTTGAGGTCAGGACTCAACG 618 * ** * * * *** * * consensus_4981#0 TAAGTAAGTAATTGAAATCAAAACTAAAGGAAAACACGCAAAACTGTAATACAACAAAAC 769 consensus_4981#1 TAAATCT----------------------------------------------------- 697 consensus_4981#2 CAG--------------------------------------------------------- 621 * consensus_4981#0 CGGTGTACACACGAACTCCATATGAAACATTGCTTCTTCTTCTTCTTCGCCGTGGCACAT 829 consensus_4981#1 ------------------------------------------------------------ consensus_4981#2 ------------------------------------------------------------ consensus_4981#0 GCGCGCGTGCGGCTAGAATACTCCGCCTATACAACGCAATGAGCAATGTAACATGTAGTA 889 consensus_4981#1 ------------------------------------------------------------ consensus_4981#2 ------------------------------------------------------------ consensus_4981#0 GTTAATTGTACTAAGCGCATT 910 consensus_4981#1 --------------------- consensus_4981#2 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||