cluster # 5

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Anopheles gambiae
cluster # 5 cluster # 5 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5#0 length = 611 sequences # 1

consensus_5#1 length = 327 sequences # 1

consensusID : consensus_5#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [TGGGATGCATATTCGCATACCTAGCAGCCAGAGGATGCCAAACAGAAGCACACTGAGATATTATATTTGATCCCTTCTTGTGGCTGGTTTTTGCGCGCGCGCGCGTGTGTATGTGTGTGGTTCGTTTGAATTATTCGATTATGCCGCATTTCTTGGACGAACAAACGGGAACAAACGTATTTAAATTAATATTTTTTTAATTGTCTTTCTTTCGTTTTAGAAGCGGGTAAAACACAGGTCGCTTTCGCGCATCGCGCATCGCGTGTGTGTGTGTGTGCGGTGTCCAGGATTGACAAACGGATGAGTTTCGATTAGCAGAAGAAAAAAATAATCAAAATTTGCACGCTCATGGCGTGGTGTGATGGCAGCAGCAGGGCGCCGCTTACGATTGGTTGGACACAAGTTAACCAAAATTACCACGTATATACTGGCCGAAAAACACACACACACACACACACATAGTGGAGAGCAGTAGTGTACGAAGAATGTGGTGCAGGTGGATCAGAAACTAAACAGAAAACCAAACACACACATTGCATCGCATACTTATTATGATGGATACGCAGTTCAAACGCAAAAAGCAAAGCAAAGAAGTAAATGTGGATGAAAAC]

[+] EMBL BX612879             [TGGGATGCATATTCGCATACCTAGCAGCCAGAGGATGCCAAACAGAAGCACACTGAGATATTATATTTGATCCCTTCTTGTGGCTGGTTTTTGCGCGCGCGCGCGTGTGTATGTGTGTGGTTCGTTTGAATTATTCGATTATGCCGCATTTCTTGGACGAACAAACGGGAACAAACGTATTTAAATTAATATTTTTTTAATTGTCTTTCTTTCGTTTTAGAAGCGGGTAAAACACAGGTCGCTTTCGCGCATCGCGCATCGCGTGTGTGTGTGTGTGCGGTGTCCAGGATTGACAAACGGATGAGTTTCGATTAGCAGAAGAAAAAAATAATCAAAATTTGCACGCTCATGGCGTGGTGTGATGGCAGCAGCAGGGCGCCGCTTACGATTGGTTGGACACAAGTTAACCAAAATTACCACGTATATACTGGCCGAAAAACACACACACACACACACACATAGTGGAGAGCAGTAGTGTACGAAGAATGTGGTGCAGGTGGATCAGAAACTAAACAGAAAACCAAACACACACATTGCATCGCATACTTATTATGATGGATACGCAGTTCAAACGCAAAAAGCAAAGCAAAGAAGTAAATGTGGATGAAAAC]




>consensus_5#0
TGGGATGCATATTCGCATACCTAGCAGCCAGAGGATGCCAAACAGAAGCACACTGAGATA
TTATATTTGATCCCTTCTTGTGGCTGGTTTTTGCGCGCGCGCGCGTGTGTATGTGTGTGG
TTCGTTTGAATTATTCGATTATGCCGCATTTCTTGGACGAACAAACGGGAACAAACGTAT
TTAAATTAATATTTTTTTAATTGTCTTTCTTTCGTTTTAGAAGCGGGTAAAACACAGGTC
GCTTTCGCGCATCGCGCATCGCGTGTGTGTGTGTGTGCGGTGTCCAGGATTGACAAACGG
ATGAGTTTCGATTAGCAGAAGAAAAAAATAATCAAAATTTGCACGCTCATGGCGTGGTGT
GATGGCAGCAGCAGGGCGCCGCTTACGATTGGTTGGACACAAGTTAACCAAAATTACCAC
GTATATACTGGCCGAAAAACACACACACACACACACACATAGTGGAGAGCAGTAGTGTAC
GAAGAATGTGGTGCAGGTGGATCAGAAACTAAACAGAAAACCAAACACACACATTGCATC
GCATACTTATTATGATGGATACGCAGTTCAAACGCAAAAAGCAAAGCAAAGAAGTAAATG
TGGATGAAAAC

consensusID : consensus_5#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [CCGCTTACGATTGGTTGGACACAAGTTAACCAAAATTACCACGTATATACTGGCCGAAAAACACACACACACACACACACATAGTGGAGAGCAGTAGTGTACGAAGAATGTGGTGCAGGTGGAGCAGAAACTAAACAGAAAACCAAACACACACATTGCATCGCATACTTATTATGATGGATACGCAGTTCAAACGCAAAAAGCAAAGCAAAGCAAAGCAAAAAAACACAAAAGACAATTGAAAGTACAGAGAAAAAACTGCAAAAGCAAAATAATACAAATCACATACTAAACATTTATTACTCTTTTAGCAAAACAAAATAAACT]

[+] EMBL BM632528             [CCGCTTACGATTGGTTGGACACAAGTTAACCAAAATTACCACGTATATACTGGCCGAAAAACACACACACACACACACACATAGTGGAGAGCAGTAGTGTACGAAGAATGTGGTGCAGGTGGAGCAGAAACTAAACAGAAAACCAAACACACACATTGCATCGCATACTTATTATGATGGATACGCAGTTCAAACGCAAAAAGCAAAGCAAAGCAAAGCAAAAAAACACAAAAGACAATTGAAAGTACAGAGAAAAAACTGCAAAAGCAAAATAATACAAATCACATACTAAACATTTATTACTCTTTTAGCAAAACAAAATAAACT]




>consensus_5#1
CCGCTTACGATTGGTTGGACACAAGTTAACCAAAATTACCACGTATATACTGGCCGAAAA
ACACACACACACACACACACATAGTGGAGAGCAGTAGTGTACGAAGAATGTGGTGCAGGT
GGAGCAGAAACTAAACAGAAAACCAAACACACACATTGCATCGCATACTTATTATGATGG
ATACGCAGTTCAAACGCAAAAAGCAAAGCAAAGCAAAGCAAAAAAACACAAAAGACAATT
GAAAGTACAGAGAAAAAACTGCAAAAGCAAAATAATACAAATCACATACTAAACATTTAT
TACTCTTTTAGCAAAACAAAATAAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5#0      TGGGATGCATATTCGCATACCTAGCAGCCAGAGGATGCCAAACAGAAGCACACTGAGATA 60
consensus_5#1      ------------------------------------------------------------
                                                                               

consensus_5#0      TTATATTTGATCCCTTCTTGTGGCTGGTTTTTGCGCGCGCGCGCGTGTGTATGTGTGTGG 120
consensus_5#1      ------------------------------------------------------------
                                                                               

consensus_5#0      TTCGTTTGAATTATTCGATTATGCCGCATTTCTTGGACGAACAAACGGGAACAAACGTAT 180
consensus_5#1      ------------------------------------------------------------
                                                                               

consensus_5#0      TTAAATTAATATTTTTTTAATTGTCTTTCTTTCGTTTTAGAAGCGGGTAAAACACAGGTC 240
consensus_5#1      ------------------------------------------------------------
                                                                               

consensus_5#0      GCTTTCGCGCATCGCGCATCGCGTGTGTGTGTGTGTGCGGTGTCCAGGATTGACAAACGG 300
consensus_5#1      ------------------------------------------------------------
                                                                               

consensus_5#0      ATGAGTTTCGATTAGCAGAAGAAAAAAATAATCAAAATTTGCACGCTCATGGCGTGGTGT 360
consensus_5#1      ------------------------------------------------------------
                                                                               

consensus_5#0      GATGGCAGCAGCAGGGCGCCGCTTACGATTGGTTGGACACAAGTTAACCAAAATTACCAC 420
consensus_5#1      ------------------CCGCTTACGATTGGTTGGACACAAGTTAACCAAAATTACCAC 42
                                     ******************************************

consensus_5#0      GTATATACTGGCCGAAAAACACACACACACACACACACATAGTGGAGAGCAGTAGTGTAC 480
consensus_5#1      GTATATACTGGCCGAAAAACACACACACACACACACACATAGTGGAGAGCAGTAGTGTAC 102
                   ************************************************************

consensus_5#0      GAAGAATGTGGTGCAGGTGGATCAGAAACTAAACAGAAAACCAAACACACACATTGCATC 540
consensus_5#1      GAAGAATGTGGTGCAGGTGGAGCAGAAACTAAACAGAAAACCAAACACACACATTGCATC 162
                   ********************* **************************************

consensus_5#0      GCATACTTATTATGATGGATACGCAGTTCAAACGCAAAAAGCAAAGCAAAG--AAGTAAA 598
consensus_5#1      GCATACTTATTATGATGGATACGCAGTTCAAACGCAAAAAGCAAAGCAAAGCAAAGCAAA 222
                   ***************************************************  *** ***

consensus_5#0      TGTGGATGAAAAC----------------------------------------------- 611
consensus_5#1      AAAACACAAAAGACAATTGAAAGTACAGAGAAAAAACTGCAAAAGCAAAATAATACAAAT 282
                        *  ***                                                 

consensus_5#0      ---------------------------------------------
consensus_5#1      CACATACTAAACATTTATTACTCTTTTAGCAAAACAAAATAAACT 327