cluster # 5003

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Anopheles gambiae
cluster # 5003 cluster # 5003 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5003#0 length = 822 sequences # 3

consensus_5003#1 length = 314 sequences # 1

consensusID : consensus_5003#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 822
fasta sequence

                              [CCGCTTTGCGTTTGGCCGGTTGGGAAAGTAAGTTGCACGCCCGTCCAAGTCGTGTGGCCGCGTGCGCCTCCCTCACTGATAGTGCTGCGTCTGGAATGTGCGTGCGTGTGTGTGTGTGCAGTGCTGTGTCTCTGAGTGATTGTGAATGACCTCAGCCTGCCAGTGGAGTTGGGGCCACGCTACATCACTGCTTAAAATCCACTTATCACAATCAAAAGTACATTTCACGTCGATAGGTTAAATAATGGACCGCATCTGCAGTAGAGCAGTGGGCTACGCTTGAGATCGTCGCACAACTGCCAGCCTGCCAACAGCGGATTTAACGAAGCGGAAACGAGGGCCCGGATCAAGTTACCGAAAATTTTGCCAATTTGCCGCTCGTAAGGCTTCGTCGTCACCACCGCGGTGCGAGCGCAGTGAAAGTGCAGTCGAATCGATCGAGCCCATCTGGCGAGCCCCGCAGTGTACAACTACTACGTGCGACTGAACGGCCGACGGGAGCCCAAACACCTATTTTCCTACCGGGCCCCCTTTCCCCCCCCCCATCCACCCCCCTTAGCATCTAGGAGCCTAGGAGCCGGAGATCGATGGGCGAATATGGCA-CACTGGACACGAACACCATCACCAGCAGTAGCAGTGCGTCCTCCGTTACGTCAATTCTGATGCCGATGCCAATGTCGATGGCAGCAGCAGCAGCAGCAGCAGCCCCACCCACCTCCTCCTCTTCCGCGGCAGCAATGTCGGTGTCTGCCGCGGGCAAACCGTCGCCCTCCTGTCCCTCCTCGACCGGGGCGGCTCCGTCCGTCGCGATGGTACTGGCGG]

[+] EMBL BM653191             [CCGCTTTGCGTTTGGCCGGTTGGGAAAGTAAGTTGCACGCCCGTCCAAGTCGTGTGGCCGCGTGCGCCTCCCTCACTGATAGTGCTGCGTCTGGAATGTGCGTGCGTGTGTGTGTGTGCAGTGCTGTGTCTCTGAGTGATTGTGAATGACCTCAGCCTGCCAGTGGAGTTGGGGCCACGCTACATCACTGCTTAAAATCCACTTATCACAATCAAAAGTACATTTCACGTCGATAGGTTAAATAATGGACCGCATCTGCAGTAGAGCAGTGGGCTACGCTTGAGATCGTCGCACAACTGCCAGCCTGCCAACAGCGGATTTAACGAAGCGGAAACGAGGGCCCGGATCAAGTTACCGAAAATTTTGCCAATTTGCCGCTCGTAAGGCTTCGTCGTCACCACCGCGGTGCGAGCGCAGTGAAAGTGCAGTCGAATCGATCGAGCCCATCTGGCGAGCCCCGCAGTGTACAACTACTACGTGCGACTGAACGGCCGACGGGAGCCCAAACACCTATTTTCCTACCGGGCCCCCTTTCCCCCCCCCCATCCACCCCCCTTAGCATCTAGGAGCCTAGGAGCCGGAGATCGATGGGCGAATATGGCA CACTGGACACGAACACCATCACCAGCAGTAGCA                                                                                                                                                                                          ]
[-] EMBL AGA283869            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  cacCCCCCCTTAGCATCTAGGAGCCTAGGAGCCGGAGATCGATGGGCGAATATGGCA CACTGGACACGAACACCATCACCAGCAGTAGCAGTGCGTCCTCCGTTACGTCAATTCTGATGCCGATGCCAATGTCGATGGCAGCAGCAGCAGCAGCAGCAGCCCCACCCACCTCCTCCTCTTCCGCGGCAGCAATGTCGGTGTCTGCCGCGGGCAAACCGTCGCCCTCCTGTCCCTCCTCGACCGGGGCGGCTCCGTCCGTCGCGATGGTA       ]
[-] EMBL AGA283291            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGGCGAATAT GCACCACTGGACACGAACACCATCACCAGCAGTAGCAGTGCGTCCTCCGTTACGTCAATTCTGATGCCGATGCCAATGTCGATGGCAGCAGCAGCAGCAGCAGCAGCCCCACCCACCTCCTCCTCTTCCGCGGCAGCAATGTCGGTGTCTGCCGCGGGCAAACCGTCGCCCTCCTGTCCCTCCTCGACCGGGGCGGCTCCGTCCGTCGCGATGGTACTGGCGG]




>consensus_5003#0
CCGCTTTGCGTTTGGCCGGTTGGGAAAGTAAGTTGCACGCCCGTCCAAGTCGTGTGGCCG
CGTGCGCCTCCCTCACTGATAGTGCTGCGTCTGGAATGTGCGTGCGTGTGTGTGTGTGCA
GTGCTGTGTCTCTGAGTGATTGTGAATGACCTCAGCCTGCCAGTGGAGTTGGGGCCACGC
TACATCACTGCTTAAAATCCACTTATCACAATCAAAAGTACATTTCACGTCGATAGGTTA
AATAATGGACCGCATCTGCAGTAGAGCAGTGGGCTACGCTTGAGATCGTCGCACAACTGC
CAGCCTGCCAACAGCGGATTTAACGAAGCGGAAACGAGGGCCCGGATCAAGTTACCGAAA
ATTTTGCCAATTTGCCGCTCGTAAGGCTTCGTCGTCACCACCGCGGTGCGAGCGCAGTGA
AAGTGCAGTCGAATCGATCGAGCCCATCTGGCGAGCCCCGCAGTGTACAACTACTACGTG
CGACTGAACGGCCGACGGGAGCCCAAACACCTATTTTCCTACCGGGCCCCCTTTCCCCCC
CCCCATCCACCCCCCTTAGCATCTAGGAGCCTAGGAGCCGGAGATCGATGGGCGAATATG
GCACACTGGACACGAACACCATCACCAGCAGTAGCAGTGCGTCCTCCGTTACGTCAATTC
TGATGCCGATGCCAATGTCGATGGCAGCAGCAGCAGCAGCAGCAGCCCCACCCACCTCCT
CCTCTTCCGCGGCAGCAATGTCGGTGTCTGCCGCGGGCAAACCGTCGCCCTCCTGTCCCT
CCTCGACCGGGGCGGCTCCGTCCGTCGCGATGGTACTGGCGG

consensusID : consensus_5003#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [CCTCCCTCACTGATAGTGCTGCGTCTGGAATGTGCGTGCGTGTGTGTGTGCAGTGCTGTGTGTCTCTGTGTGATTGTGAATGACCTCAGCCTGCCAGTGGAGTTGGGGCCACGCTACATCACTGCTTAAAATCCACTTATCACAATCAAAAGTACATTTCACGTCGATAGGCATAGGTGCTGGAGCAAAGCAACGAGGAGGAGAGAGCCGAAGGTGTACAGCGTGCCTGAGTCGTGTCGCAAAAACCCCGGTGGGACGGGGTAATAAACACGCTGGCCAATATATTGTGTGCGGTTAAATAATGGACCGCATCT]

[+] EMBL AGA285162            [CCTCCCTCACTGATAGTGCTGCGTCTGGAATGTGCGTGCGTGTGTGTGTGCAGTGCTGTGTGTCTCTGTGTGATTGTGAATGACCTCAGCCTGCCAGTGGAGTTGGGGCCACGCTACATCACTGCTTAAAATCCACTTATCACAATCAAAAGTACATTTCACGTCGATAGGCATAGGTGCTGGAGCAAAGCAACGAGGAGGAGAGAGCCGAAGGTGTACAGCGTGCCTGAGTCGTGTCGCAAAAACCCCGGTGGGACGGGGTAATAAACACGCTGGCCAATATATTGTGTGCGGTTAAATAATGGACCGCATCT]




>consensus_5003#1
CCTCCCTCACTGATAGTGCTGCGTCTGGAATGTGCGTGCGTGTGTGTGTGCAGTGCTGTG
TGTCTCTGTGTGATTGTGAATGACCTCAGCCTGCCAGTGGAGTTGGGGCCACGCTACATC
ACTGCTTAAAATCCACTTATCACAATCAAAAGTACATTTCACGTCGATAGGCATAGGTGC
TGGAGCAAAGCAACGAGGAGGAGAGAGCCGAAGGTGTACAGCGTGCCTGAGTCGTGTCGC
AAAAACCCCGGTGGGACGGGGTAATAAACACGCTGGCCAATATATTGTGTGCGGTTAAAT
AATGGACCGCATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5003#0      CCGCTTTGCGTTTGGCCGGTTGGGAAAGTAAGTTGCACGCCCGTCCAAGTCGTGTGGCCG 60
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      CGTGCGCCTCCCTCACTGATAGTGCTGCGTCTGGAATGTGCGTGCGTGTGTGTGTGTGCA 120
consensus_5003#1      ------CCTCCCTCACTGATAGTGCTGCGTCTGGAATGTGCGTGCGTGTGTGTGTGCAGT 54
                            **************************************************    

consensus_5003#0      GTGCTGTGTCTCTGAGTGATTGTGAATGACCTCAGCCTGCCAGTGGAGTTGGGGCCACGC 180
consensus_5003#1      GCTGTGTGTCTCTGTGTGATTGTGAATGACCTCAGCCTGCCAGTGGAGTTGGGGCCACGC 114
                      *   ********** *********************************************

consensus_5003#0      TACATCACTGCTTAAAATCCACTTATCACAATCAAAAGTACATTTCACGTCGATAGGT-T 239
consensus_5003#1      TACATCACTGCTTAAAATCCACTTATCACAATCAAAAGTACATTTCACGTCGATAGGCAT 174
                      *********************************************************  *

consensus_5003#0      AAATAATGGACCGCATCTGCAGTAGAGCAGTGGGCTACGCTTGAGATCGTCGCACAACTG 299
consensus_5003#1      AGGTGCTGGAGCAAAGCAAC-GAGGAGGAGAGAGC--CGAAGGTGTACAGCGTGCCTGAG 231
                      *  *  **** *  * *  * *  *** ** * **  **   * *  *  **  *    *

consensus_5003#0      CCAGCCTGCCAACAGCGGATTTAACGAAGCGGAAACGAGGGCCCGGATCAAGTTACCGAA 359
consensus_5003#1      TCGTGTCGCAAAAACCCCGGT--GGGACGGGGTAATAAACACGCTGGCCAATATATTGTG 289
                       *     ** ** * *    *    ** * ** **  *   * * *  ***  **  *  

consensus_5003#0      AAT--TTTGCCAATTTGCCGCTCGTAAGGCTTCGTCGTCACCACCGCGGTGCGAGCGCAG 417
consensus_5003#1      TGCGGTTAAATAATGGACCGCATCT----------------------------------- 314
                           **    ***   ****   *                                   

consensus_5003#0      TGAAAGTGCAGTCGAATCGATCGAGCCCATCTGGCGAGCCCCGCAGTGTACAACTACTAC 477
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      GTGCGACTGAACGGCCGACGGGAGCCCAAACACCTATTTTCCTACCGGGCCCCCTTTCCC 537
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      CCCCCCCATCCACCCCCCTTAGCATCTAGGAGCCTAGGAGCCGGAGATCGATGGGCGAAT 597
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      ATGGCACACTGGACACGAACACCATCACCAGCAGTAGCAGTGCGTCCTCCGTTACGTCAA 657
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      TTCTGATGCCGATGCCAATGTCGATGGCAGCAGCAGCAGCAGCAGCAGCCCCACCCACCT 717
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      CCTCCTCTTCCGCGGCAGCAATGTCGGTGTCTGCCGCGGGCAAACCGTCGCCCTCCTGTC 777
consensus_5003#1      ------------------------------------------------------------
                                                                                  

consensus_5003#0      CCTCCTCGACCGGGGCGGCTCCGTCCGTCGCGATGGTACTGGCGG 822
consensus_5003#1      ---------------------------------------------