cluster # 5017

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Anopheles gambiae
cluster # 5017 cluster # 5017 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5017#0 length = 619 sequences # 2

consensus_5017#1 length = 600 sequences # 1
consensus_5017#2 length = 414 sequences # 1

consensusID : consensus_5017#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 619
fasta sequence

                              [CCGCACAAACACTCTCTTTGCAGCTTCATGGACAATGCGGAAGGATCCGGCAGTGGTCCACCGAGCGGGGTCATGAGCGTCGTCGGTGGGTATACGAGCCGCCGATCGCCCCTGCTGCTCCCGTCGGGCGACGGGGGACCGGGTGGCCCGGGCGCGCTGCTGTCGGCCGCCCTGCCCCAGCGCCGCGAGTCCTTCCTGTACCGGTCCGATTCCGACTTTGAGATCTCGCCGAAGGTGTCGTCCGTGTCGCTGCTGGCGGCGCGCTGCAGCGCCAACAACAGTGGCTCCGGCACGTCCACCTCGAACGTGGCGAGCACCGGCAGCGGCACCACGCTGACCTCGGGCGGTGGCGGGGGAACCGGCGGAGGCAGCCGGGACGGTGCGTTCCACTGGAAGGAGACGAGCACGCTGGAGGAACCGGCGGTACTGTCGTCGATCGCGTCGTCACCGTCCAGCAGCGCGACGACCGTGGTCGGGGCCGCCTCCTCCACCGTGGTGACGTCCTCCACGTCCGAGCGGACCACTATGATGAGCGGTTCCGGTGGCGGTGGGTCGAGCGGCCACCATGACGATCTGATCGTGACGCCGTTCGCCCAGATACTGGCCAGCCTGCGCACGG]

[+] EMBL BM620249             [CCGCACAAACACTCTCTTTGCAGCTTCATGGACAATGCGGAAGGATCCGGCAGTGGTCCACCGAGCGGGGTCATGAGCGTCGTCGGTGGGTATACGAGCCGCCGATCGCCCCTGCTGCTCCCGTCGGGCGACGGGGGACCGGGTGGCCCGGGCGCGCTGCTGTCGGCCGCCCTGCCCCAGCGCCGCGAGTCCTTCCTGTACCGGTCCGATTCCGACTTTGAGATCTCGCCGAAGGTGTCGTCCGTGTCGCTGCTGGCGGCGCGCTGCAGCGCCAACAACAGTGGCTCCGGCACGTCCACCTCGAACGTGGCGAGCACCGGCAGCGGCACCACGCTGACCTCGGGCGGTGGCGGGGGAACCGGCGGAGGCAGCCGGGACGGTGCGTTCCACTGGAAGGAGACGAGCACGCTGGAGGAACCGGCGGTACTGTCGTCGATCGCGTCGTCACCGTCCAGCAGCGCGACGACCGTGGTCGGGGCCGCCTCCTCCACCGTGGTGACGTCCTCCACGTCCGAGCGGACCACTATGATGAGCGGTTCCGGTGGCGGTGGGTCGAGCGGCCACCATGACGATCTGATCGTGACGCCGTTCGCCCAGATACTGGCCAGCCTGCGCACGG]
[-] EMBL AGA284991            [                                                                                                                                                                                                    TGTACCGGTCCGATTCCGACTTTGAGATCTCGCCGAAGGTGTCGTCCGTGTCGCTGCTGGCGGCGCGCTGCAGCGCCAACAACAGTGGCTCCGGCACGTCCACCTCGAACGTGGCGAGCACCGGCAGCGGCACCACGCTGACCTCGGGCGGTGGCGGGGTAACCGGCGGAGGCAGCCGGGACGGTGCGTTCCACTGGAAGGAGACGAGCACGCTGGAGGAACCGGCGGTACTGTCGTCGATCGCGTCGTCACCGTCCAGCAGCGCGACGACCGTGGTCGGGGCCGCCTCCTCCACCGTGGTGACGTCCTCCACGTCCGAGCGGACCACTATGATGAGCGGTTCCGGTGGCGGTGG                                                                    ]




>consensus_5017#0
CCGCACAAACACTCTCTTTGCAGCTTCATGGACAATGCGGAAGGATCCGGCAGTGGTCCA
CCGAGCGGGGTCATGAGCGTCGTCGGTGGGTATACGAGCCGCCGATCGCCCCTGCTGCTC
CCGTCGGGCGACGGGGGACCGGGTGGCCCGGGCGCGCTGCTGTCGGCCGCCCTGCCCCAG
CGCCGCGAGTCCTTCCTGTACCGGTCCGATTCCGACTTTGAGATCTCGCCGAAGGTGTCG
TCCGTGTCGCTGCTGGCGGCGCGCTGCAGCGCCAACAACAGTGGCTCCGGCACGTCCACC
TCGAACGTGGCGAGCACCGGCAGCGGCACCACGCTGACCTCGGGCGGTGGCGGGGGAACC
GGCGGAGGCAGCCGGGACGGTGCGTTCCACTGGAAGGAGACGAGCACGCTGGAGGAACCG
GCGGTACTGTCGTCGATCGCGTCGTCACCGTCCAGCAGCGCGACGACCGTGGTCGGGGCC
GCCTCCTCCACCGTGGTGACGTCCTCCACGTCCGAGCGGACCACTATGATGAGCGGTTCC
GGTGGCGGTGGGTCGAGCGGCCACCATGACGATCTGATCGTGACGCCGTTCGCCCAGATA
CTGGCCAGCCTGCGCACGG

consensusID : consensus_5017#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence

                              [CCGGGGAAAGTTTGGAAGTCGGCCGGAAGGAGGCGGCGGACGAGGAGGAGCGGGACGACGACGAGCAGGAGGAAATCGACGACGGCTACAGTGCGGATGAGGACGACTCGGCGCGGCGGGTCCTCGCCGTCCCACTCATACCGACGGTAGCCGGCGCGGGCAAGTACCAGCAGGCTGGCAAACCTCAGCAACAACTCCCACCGCCCCATCCCAAATATCATCGGAACCGGCGCCATACGCTGGCGAACGTGCGCTTCATGGACAATGCGGAAGGATCCGGCAGTGGTCCACCGAGCGGGGTCATGAGCGTCGTCGGTGGGTATACGAGCCGCCGATCGCCCCTGCTGCTCCCGTCGGGCGACGGGGGACCGGGTGGCCCGGGCGCGCTGCTGTCGGCCGCCCTGCCCCAGCGCCGCGAGTCCTTCCTGTACCGGTCCGATTCCGACTTTGAGATCTCGCCGAAGGTGTCGTCCGTGTCGCTGCTGGCGGCGCGCTGCAGCGCCAACAACAGTGGCTCCGGCACGTCCACCTCGAACGTGGCGAGCACCGGCAGCGGCACCACGCTGACCTCGGGCGGTGGCGGGGGAACCGGCGGAGGCA]

[+] EMBL BM642858             [CCGGGGAAAGTTTGGAAGTCGGCCGGAAGGAGGCGGCGGACGAGGAGGAGCGGGACGACGACGAGCAGGAGGAAATCGACGACGGCTACAGTGCGGATGAGGACGACTCGGCGCGGCGGGTCCTCGCCGTCCCACTCATACCGACGGTAGCCGGCGCGGGCAAGTACCAGCAGGCTGGCAAACCTCAGCAACAACTCCCACCGCCCCATCCCAAATATCATCGGAACCGGCGCCATACGCTGGCGAACGTGCGCTTCATGGACAATGCGGAAGGATCCGGCAGTGGTCCACCGAGCGGGGTCATGAGCGTCGTCGGTGGGTATACGAGCCGCCGATCGCCCCTGCTGCTCCCGTCGGGCGACGGGGGACCGGGTGGCCCGGGCGCGCTGCTGTCGGCCGCCCTGCCCCAGCGCCGCGAGTCCTTCCTGTACCGGTCCGATTCCGACTTTGAGATCTCGCCGAAGGTGTCGTCCGTGTCGCTGCTGGCGGCGCGCTGCAGCGCCAACAACAGTGGCTCCGGCACGTCCACCTCGAACGTGGCGAGCACCGGCAGCGGCACCACGCTGACCTCGGGCGGTGGCGGGGGAACCGGCGGAGGCA]




>consensus_5017#1
CCGGGGAAAGTTTGGAAGTCGGCCGGAAGGAGGCGGCGGACGAGGAGGAGCGGGACGACG
ACGAGCAGGAGGAAATCGACGACGGCTACAGTGCGGATGAGGACGACTCGGCGCGGCGGG
TCCTCGCCGTCCCACTCATACCGACGGTAGCCGGCGCGGGCAAGTACCAGCAGGCTGGCA
AACCTCAGCAACAACTCCCACCGCCCCATCCCAAATATCATCGGAACCGGCGCCATACGC
TGGCGAACGTGCGCTTCATGGACAATGCGGAAGGATCCGGCAGTGGTCCACCGAGCGGGG
TCATGAGCGTCGTCGGTGGGTATACGAGCCGCCGATCGCCCCTGCTGCTCCCGTCGGGCG
ACGGGGGACCGGGTGGCCCGGGCGCGCTGCTGTCGGCCGCCCTGCCCCAGCGCCGCGAGT
CCTTCCTGTACCGGTCCGATTCCGACTTTGAGATCTCGCCGAAGGTGTCGTCCGTGTCGC
TGCTGGCGGCGCGCTGCAGCGCCAACAACAGTGGCTCCGGCACGTCCACCTCGAACGTGG
CGAGCACCGGCAGCGGCACCACGCTGACCTCGGGCGGTGGCGGGGGAACCGGCGGAGGCA

consensusID : consensus_5017#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence

                              [GATGCTGACGATGGGCCGCCCGAACCACCAGCTTCCCCCGGGCCTGTCCCTGTTCGGCTGTGCCGGCGGGGCCAACTACCAGCGCTGCAAGCTCTTCATGGACAATGCGGAAGGATCCGGCAGTGGTCCACCGAGCGGGGTCATGAGCGTCGTCGGTGGGTATACGAGCCGCCGATCGCCCCTGCTGCTCCCGTCGGGCGACGGGGGACCGGGTGGCCCGGGCGCGCTGCTGTCCTGCCCCAGCGCCGCGAGTCCTTCCTGTACCGGTCCGATTCCGACTTTGAGATCTCGCCGAAGGTGTCGTCCGTGTCGCTGCTGGCGGCGCGCTGCAGCGCCAACAACAGTGGCTCCGGCACGTCCACCTCGAACGTGGCGAGCACCGGCAGCGGCACCACGCTGACCTCCGGCGGTGGC]

[+] EMBL AGA283702            [GATGCTGACGATGGGCCGCCCGAACCACCAGCTTCCCCCGGGCCTGTCCCTGTTCGGCTGTGCCGGCGGGGCCAACTACCAGCGCTGCAAGCTCTTCATGGACAATGCGGAAGGATCCGGCAGTGGTCCACCGAGCGGGGTCATGAGCGTCGTCGGTGGGTATACGAGCCGCCGATCGCCCCTGCTGCTCCCGTCGGGCGACGGGGGACCGGGTGGCCCGGGCGCGCTGCTGTCCTGCCCCAGCGCCGCGAGTCCTTCCTGTACCGGTCCGATTCCGACTTTGAGATCTCGCCGAAGGTGTCGTCCGTGTCGCTGCTGGCGGCGCGCTGCAGCGCCAACAACAGTGGCTCCGGCACGTCCACCTCGAACGTGGCGAGCACCGGCAGCGGCACCACGCTGACCTCCGGCGGTGGC]




>consensus_5017#2
GATGCTGACGATGGGCCGCCCGAACCACCAGCTTCCCCCGGGCCTGTCCCTGTTCGGCTG
TGCCGGCGGGGCCAACTACCAGCGCTGCAAGCTCTTCATGGACAATGCGGAAGGATCCGG
CAGTGGTCCACCGAGCGGGGTCATGAGCGTCGTCGGTGGGTATACGAGCCGCCGATCGCC
CCTGCTGCTCCCGTCGGGCGACGGGGGACCGGGTGGCCCGGGCGCGCTGCTGTCCTGCCC
CAGCGCCGCGAGTCCTTCCTGTACCGGTCCGATTCCGACTTTGAGATCTCGCCGAAGGTG
TCGTCCGTGTCGCTGCTGGCGGCGCGCTGCAGCGCCAACAACAGTGGCTCCGGCACGTCC
ACCTCGAACGTGGCGAGCACCGGCAGCGGCACCACGCTGACCTCCGGCGGTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5017#1      CCGGGGAAAGTTTGGAAGTCGGCCGGAAGGAGGCGGCGGACGAGGAGGAGCGGGACGACG 60
consensus_5017#2      ------------------------------------------------------------
consensus_5017#0      ------------------------------------------------------------
                                                                                  

consensus_5017#1      ACGAGCAGGAGGAAATCGACGACGGCTACAGTGCGGATGAGGACGACTCGGCGCGGCGGG 120
consensus_5017#2      ------------------------------------------------------------
consensus_5017#0      ------------------------------------------------------------
                                                                                  

consensus_5017#1      TCCTCGCCGTCCCACTCATACCGACGGTAGCCGGCGCGGGCAAGTACCAGCAGGCTGGCA 180
consensus_5017#2      ------------------------------------------GATGCTGAC-GATGGGCC 17
consensus_5017#0      ------------------------------------------------------------
                                                                                  

consensus_5017#1      AACCTCAGCAACAACTCCCACCGCCCCATCCCAAATATCATCGGAACCGGC---GCCATA 237
consensus_5017#2      GCCCGAACCACCAGCTTCCCCCGGGCCTGTCCCTGT-TCGGCTGTGCCGGCGGGGCCAAC 76
consensus_5017#0      -------------------------------------------------------CCGCA 5
                                                                             **   

consensus_5017#1      CGCTGGCGA-ACGTGC-GCTTCATGGACAATGCGGAAGGATCCGGCAGTGGTCCACCGAG 295
consensus_5017#2      TACCAGCGCTGCAAGC-TCTTCATGGACAATGCGGAAGGATCCGGCAGTGGTCCACCGAG 135
consensus_5017#0      CAAACACTCTCTTTGCAGCTTCATGGACAATGCGGAAGGATCCGGCAGTGGTCCACCGAG 65
                            *       **  ******************************************

consensus_5017#1      CGGGGTCATGAGCGTCGTCGGTGGGTATACGAGCCGCCGATCGCCCCTGCTGCTCCCGTC 355
consensus_5017#2      CGGGGTCATGAGCGTCGTCGGTGGGTATACGAGCCGCCGATCGCCCCTGCTGCTCCCGTC 195
consensus_5017#0      CGGGGTCATGAGCGTCGTCGGTGGGTATACGAGCCGCCGATCGCCCCTGCTGCTCCCGTC 125
                      ************************************************************

consensus_5017#1      GGGCGACGGGGGACCGGGTGGCCCGGGCGCGCTGCTGTCGGCCGCCCTGCCCCAGCGCCG 415
consensus_5017#2      GGGCGACGGGGGACCGGGTGGCCCGGGCGCGCTGCTGTC-------CTGCCCCAGCGCCG 248
consensus_5017#0      GGGCGACGGGGGACCGGGTGGCCCGGGCGCGCTGCTGTCGGCCGCCCTGCCCCAGCGCCG 185
                      ***************************************       **************

consensus_5017#1      CGAGTCCTTCCTGTACCGGTCCGATTCCGACTTTGAGATCTCGCCGAAGGTGTCGTCCGT 475
consensus_5017#2      CGAGTCCTTCCTGTACCGGTCCGATTCCGACTTTGAGATCTCGCCGAAGGTGTCGTCCGT 308
consensus_5017#0      CGAGTCCTTCCTGTACCGGTCCGATTCCGACTTTGAGATCTCGCCGAAGGTGTCGTCCGT 245
                      ************************************************************

consensus_5017#1      GTCGCTGCTGGCGGCGCGCTGCAGCGCCAACAACAGTGGCTCCGGCACGTCCACCTCGAA 535
consensus_5017#2      GTCGCTGCTGGCGGCGCGCTGCAGCGCCAACAACAGTGGCTCCGGCACGTCCACCTCGAA 368
consensus_5017#0      GTCGCTGCTGGCGGCGCGCTGCAGCGCCAACAACAGTGGCTCCGGCACGTCCACCTCGAA 305
                      ************************************************************

consensus_5017#1      CGTGGCGAGCACCGGCAGCGGCACCACGCTGACCTCGGGCGGTGGCGGGGGAACCGGCGG 595
consensus_5017#2      CGTGGCGAGCACCGGCAGCGGCACCACGCTGACCTCCGGCGGTGGC-------------- 414
consensus_5017#0      CGTGGCGAGCACCGGCAGCGGCACCACGCTGACCTCGGGCGGTGGCGGGGGAACCGGCGG 365
                      ************************************ *********              

consensus_5017#1      AGGCA------------------------------------------------------- 600
consensus_5017#2      ------------------------------------------------------------
consensus_5017#0      AGGCAGCCGGGACGGTGCGTTCCACTGGAAGGAGACGAGCACGCTGGAGGAACCGGCGGT 425
                                                                                  

consensus_5017#1      ------------------------------------------------------------
consensus_5017#2      ------------------------------------------------------------
consensus_5017#0      ACTGTCGTCGATCGCGTCGTCACCGTCCAGCAGCGCGACGACCGTGGTCGGGGCCGCCTC 485
                                                                                  

consensus_5017#1      ------------------------------------------------------------
consensus_5017#2      ------------------------------------------------------------
consensus_5017#0      CTCCACCGTGGTGACGTCCTCCACGTCCGAGCGGACCACTATGATGAGCGGTTCCGGTGG 545
                                                                                  

consensus_5017#1      ------------------------------------------------------------
consensus_5017#2      ------------------------------------------------------------
consensus_5017#0      CGGTGGGTCGAGCGGCCACCATGACGATCTGATCGTGACGCCGTTCGCCCAGATACTGGC 605
                                                                                  

consensus_5017#1      --------------
consensus_5017#2      --------------
consensus_5017#0      CAGCCTGCGCACGG 619