cluster # 5031

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Anopheles gambiae
cluster # 5031 cluster # 5031 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5031#0 length = 744 sequences # 2

consensus_5031#1 length = 688 sequences # 2

consensusID : consensus_5031#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 744
fasta sequence

                              [TTTTTTTTACAAGTGATCGGGTTAGATTTTATTAATTTCCATCCATAGGGTAGAGCAATAAACGAATCGGGCGTGCAAAACTAACGCGCAGCCTTCTTCTTCGCCTTCGTCTTGAAGCGATCCAGTACACTTTTCGGTTCCAGCGGTATGAAGTCGGCCGATTCCGCCGGTGCTTTGGCTTCATCTTCTGCCAACAGCTTCTCCTTGATCTGCCGCAACTCGTTCGCTGTCTCGCGGAAGCGGGCTTCCTTCACGTTCTGCTTTATCTTGATAAGCTTGGCCTTCGAGACACGGTTGCGCTTGCGTGGCTCAAAGTCGATCTTGGGCGGCTTCATGGTCAGCAGCTTCACCTTCTGCTCGAGCCGCGCCTTGGCGGATGGTATGTCCACCTCGTCGATCTGCGCCGGATTGAGCGTGATGAATTCGGCCGGAATCTTTTCCAGCAGTCTGTGCACCTCCTCTTCCTGCCGCTGCGTGCGCGACTGGAAGGGATTGGCCTCGAAGGTGTCAAAGTTCGGTTCGCCCGAACCGGGCACGATCAGTGACACGAAGCCCTTCGCCGTGCCTACGCCGAGAATGTCTTCGTACGGGCAGAACCGAATGCTTGAAATCGGACCATTCGTCCGGTGGCGGATGTANGGCTTCATCTGGGCTTCCGTCGAGCTGTTATCACGCCGGTACACCTCACACACGTTGCCCATCGACAGTGCGAGCAGCCCGCGCTGGGACAGCTCGATCTCGGAT]

[+] EMBL AGA284294            [TTTTTTTTACAAGTGATCGGGTTAGATTTTATTAATTTCCATCCATAGGGTAGAGCAATAAACGAATCGGGCGTGCAAAACTAACGCGCAGCCTTCTTCTTCGCCTTCGTCTTGAAGCGATCCAGTACACTTTTCGGTTCCAGCGGTATGAAGTCGGCCGATTCCGCCGGTGCTTTGGCTTCATCTTCTGCCAACAGCTTCTCCTTGATCTGCCGCAACTCGTTCGCTGTCTCGCGGAAGCGGGCTTCCTTCACGTTCTGCTTTATCTTGATAAGCTTGGCCTTCGAGACACGGTTGCGCTTGCGTGGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX627479             [                 CGGGTTAGATTTTATTAATTTCCATCCATAGGGTAGAGCAATAAACGAATCGGGCGTGCTAAACTAACGCGCAGCCTTCTTCTTCGCCTTCGTCTTGAAGCGATCCAGCACACTTTTCGGTTCCAGCGGTATGAAGTCGGCCGATTCCGCCGGTGCTTTGGCTTCATCTTCTGCCAACAGCTTCTCCTTGATCTGCCGCAACTCGTTCGCTGTCTCGCGGAAGCGGGCTTCCTTCACGTTCTGCTTGATCTTGATAAGCTTGGCCTTCGAGACACGGTTGCGCTTGCGTGGCTCAAAGTCGATCTTGGGCGGCTTCATGGTCAGCAGCTTCACCTTCTGCTCGAGCCGCGCCTTGGCGGATGGTATGTCCACCTCGTCGATCTGCGCCGGATTGAGCGTGATGAATTCGGCCGGAATCTTTTCCAGCAGTCTGTGCACCTCCTCTTCCTGCCGCTGCGTGCGCGACTGGAAGGGATTGGCCTCGAAGGTGTCAAAGTTCGGTTCGCCCGAACCGGGCACGATCAGTGACACGAAGCCCTTCGCCGTGCCTACGCCGAGAATGTCTTCGTACGGGCAGAACCGAATGCTTGAAATCGGACCATTCGTCCGGTGGCGGATGTANGGCTTCATCTGGGCTTCCGTCGAGCTGTTATCACGCCGGTACACCTCACACACGTTGCCCATCGACAGTGCGAGCAGCCCGCGCTGGGACAGCTCGATCTCGGAT]




>consensus_5031#0
TTTTTTTTACAAGTGATCGGGTTAGATTTTATTAATTTCCATCCATAGGGTAGAGCAATA
AACGAATCGGGCGTGCAAAACTAACGCGCAGCCTTCTTCTTCGCCTTCGTCTTGAAGCGA
TCCAGTACACTTTTCGGTTCCAGCGGTATGAAGTCGGCCGATTCCGCCGGTGCTTTGGCT
TCATCTTCTGCCAACAGCTTCTCCTTGATCTGCCGCAACTCGTTCGCTGTCTCGCGGAAG
CGGGCTTCCTTCACGTTCTGCTTTATCTTGATAAGCTTGGCCTTCGAGACACGGTTGCGC
TTGCGTGGCTCAAAGTCGATCTTGGGCGGCTTCATGGTCAGCAGCTTCACCTTCTGCTCG
AGCCGCGCCTTGGCGGATGGTATGTCCACCTCGTCGATCTGCGCCGGATTGAGCGTGATG
AATTCGGCCGGAATCTTTTCCAGCAGTCTGTGCACCTCCTCTTCCTGCCGCTGCGTGCGC
GACTGGAAGGGATTGGCCTCGAAGGTGTCAAAGTTCGGTTCGCCCGAACCGGGCACGATC
AGTGACACGAAGCCCTTCGCCGTGCCTACGCCGAGAATGTCTTCGTACGGGCAGAACCGA
ATGCTTGAAATCGGACCATTCGTCCGGTGGCGGATGTANGGCTTCATCTGGGCTTCCGTC
GAGCTGTTATCACGCCGGTACACCTCACACACGTTGCCCATCGACAGTGCGAGCAGCCCG
CGCTGGGACAGCTCGATCTCGGAT

consensusID : consensus_5031#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 688
fasta sequence

                              [AAAAAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTAGTTTTGCACGCCCGATTCGTTTATTGCTCTACCCTATGGATGGAAATTAATAAAATCTAACCCGATCACTTGTAAATGCTTGTGTAGTATTCTTCCTCGAGGTCGTACAAATCCGCTGCCATGTCGTCCCGCACGGCCATCAGCTTGTTGTCCCGATCGATCTGTGTGGTCCGATAGAGGGTGGAGTTGCTGCAGATAGCCTCATTGACCGAGTTGAAGTCGTTCAGGATGAGGTACTGCTTGATGTCGGACACCAGCTTCATTAGCGACTCGCCGGCCCGTACAATGTTGGCCGCCCGGACCTGCGTTTCATACGTGTCCTGCTCGCACTGCGTTATCTTGGACAGCTGTGTGTCATTCTCGCCCTTGGCAAGCCGGATTATTTCTTCAAAATTTTCCCGCATACTCCGAATGTCCTCTTTCAGCCGGGAATTGTAGGATTTCAGCAGGGCTTCCTTCGATTGGGTCAGATTACGCTGCATATTGACTCGGTAACAGTTTGCTGGAAGCAAAGTTGAATTTCTTCGGCAGTTTTATCTAAAAGCTAAAATTCTGCGGGAGAATGCTAAAATTG-TCCC-TTTTCCTCAGTTA-TTACCAATCAGTTCCAATAGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTT]

[-] EMBL CNS08NAO             [AAAAAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTAGTTTTGCACGCCCGATTCGTTTATTGCTCTACCCTATGGATGGAAATTAATAAAATCTAACCCGATCACTTGTAAATGCTTGTGTAGTATTCTTCCTCGAGGTCGTACAAATCCGCTGCCATGTCGTCCCGCACGGCCATCAGCTTGTTGTCCCGATCGATCTGTGTGGTCCGATAGAGGGTGGAGTTGCTGCAGATAGCCTCATTGACCGAGTTGAAGTCGTTCAGGATGAGGTACTGCTTGATGTCGGACACCAGCTTCATTAGCGACTCGCCGGCCCGTACAATGTTGGCCGCCCGGACCTGCGTTTCATACGTGTCCTGCTCGCACTGCGTTATCTTGGACAGCTGTGTGTCATTCTCGCCCTTGGCAAGCCGGATTATTTCTTCAAAATTTTCCCGCATACTCCGAATGTCCTCTTTCAGCCGGGAATTGTAGGATTTCAGCAGGGCTTCCTTCGATTGGGTCAGATTACGCTGCATATTGACTCGGTAACAGTTTGCTGGAAGCAAAGTTGAATTTCTTCGGCAGTTTTATCTAAAAGCTAAAATTCTGCGGGAGAATGCTAAAATTG TCCC TTTTCCTCAGTTA TTACCAATCAG                                          ]
[+] EMBL CNS08NAP             [                                                                                                                                                                                                           ATCTGTGTGGTCCGATAGAGGGTGGAGTTGCTGCAGAAAGCCTCATTGACCGAGTGGAAGTCGTTCAGGATGAGGTACTGCTTGATGTCGGACACCAGCTTCATTAGCGACTCGCCGGCCCGTACAATGTTGGCCGCCCGGACCTGCGTTTCATACGTTTCCTGCTCGCACTGCGTTATCTTGGACAGCTGTTTTTTATTCTCGCCCTTGGCAAGCCGGATTATTTCTTCAAAATTTTCCCGCATACTCCGAATGTCCTCTTTCAGCCGGGAATTGTAGGATTTCAGCAGGGCTTCCTTCGATTGGGTCAGATTACGCTGCATATTGACTCGGTAACAGTTTGCTGGAAGCAAAGTTGAATTTCTTCGGCAGTTTTATCTAAAAGCTAAAATTCTGCGGGAGAATGCTAAAATTGTTCCCTTTTTCCTCAGTTATTTACATTTCAGTTCCAATAGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTT]




>consensus_5031#1
AAAAAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTAGTTTTGCACGCCCGAT
TCGTTTATTGCTCTACCCTATGGATGGAAATTAATAAAATCTAACCCGATCACTTGTAAA
TGCTTGTGTAGTATTCTTCCTCGAGGTCGTACAAATCCGCTGCCATGTCGTCCCGCACGG
CCATCAGCTTGTTGTCCCGATCGATCTGTGTGGTCCGATAGAGGGTGGAGTTGCTGCAGA
TAGCCTCATTGACCGAGTTGAAGTCGTTCAGGATGAGGTACTGCTTGATGTCGGACACCA
GCTTCATTAGCGACTCGCCGGCCCGTACAATGTTGGCCGCCCGGACCTGCGTTTCATACG
TGTCCTGCTCGCACTGCGTTATCTTGGACAGCTGTGTGTCATTCTCGCCCTTGGCAAGCC
GGATTATTTCTTCAAAATTTTCCCGCATACTCCGAATGTCCTCTTTCAGCCGGGAATTGT
AGGATTTCAGCAGGGCTTCCTTCGATTGGGTCAGATTACGCTGCATATTGACTCGGTAAC
AGTTTGCTGGAAGCAAAGTTGAATTTCTTCGGCAGTTTTATCTAAAAGCTAAAATTCTGC
GGGAGAATGCTAAAATTGTCCCTTTTCCTCAGTTATTACCAATCAGTTCCAATAGGCCAA
CAGTTCTCGAGGAATTCCGCAGCTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5031#0      -----TTTTTTTTACAAGTGATCGGGTTAGATTTTATTAATTTCCATCCATAGGGTAGAG 55
consensus_5031#1      AAAAAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTTTAGTTTTGCACGCCCGAT 60
                             *     *** ***  *   **   **** **  ***   *    * *   ** 

consensus_5031#0      CAATAAACGAATCGGGCGTGCAAAACTAACGCGCAGCCTTCTTCTTCGCCTTCGTCTTGA 115
consensus_5031#1      TCGTTTATTGCTCTACCCTATGGATGGAAATTAATAAAATCTAACCCGATCACTTGTAAA 120
                         *  *    **   * *    *   **          ***    **    * * *  *

consensus_5031#0      AGCG-ATCCAGTACACTTTTC---GGTTCCAGCGGTATGAAGTCGGCCGATTCCGCCGGT 171
consensus_5031#1      TGCTTGTGTAGTATTCTTCCTCGAGGTCGTACAAATCCGCTGCCATGTCGTCCCGCACGG 180
                       **   *  ****  ***      ***   *    *  *  * *      * ****  * 

consensus_5031#0      GCTTTGGCTTCATCTTCTG-CCAACAGCTTCTCCTTGATCTGCCGCA-ACTCGTTC---G 226
consensus_5031#1      CCATCAGCTTGTTGTCCCGATCGATCTGTGTGGTCCGATAGAGGGTGGAGTTGCTGCAGA 240
                       * *  ****  * * * *  * *    *       ***     *   * * * *     

consensus_5031#0      CTGTCTCGCGGA---AGCGGGCTTCCTTCACGTTCTGCTTTATCTTGATAAGCTTGGCCT 283
consensus_5031#1      TAGCCTCATTGACCGAGTTGAAGTCGTTCAGGATGAGGTACTGCTTGATG---TCGGACA 297
                        * ***   **   **  *   ** **** * *  * *    ******    * ** * 

consensus_5031#0      TCGAGACACGGTTGCGCTTGCGTGGCTCAAAGTCGATCTTGGGCGGCTTCATGGTCAGCA 343
consensus_5031#1      CC-AGCTTCATTAGCGACTCGCCGGCCCGTA--CAATGTTGGCCGCCCGGACCTGCGTTT 354
                       * **   *  * ***  *    *** *  *  * ** **** ** *   *    *    

consensus_5031#0      GCTTCACCTTCTGCTCGAGCCGCGCCTTGGCGGATGGTATGTCCACCTCGTCGATCTGCG 403
consensus_5031#1      CATACGTGTCCTGCTCGCACTGCGTTATCTTGGACAGC-TGTGT-----GTCATTCTCGC 408
                        * *   * *******  * ***   *   ***  *  ***       ***  ***   

consensus_5031#0      CCGGATTGAGCGTGATGAATTCGGCCGGAATCTTTTCCAGCAGTCTGTGCACCTCCTCTT 463
consensus_5031#1      CCTTGGCAAGCCGGATTATTTCTTCAAAA---TTTTCCCGCATACTCCGAATGTCCTCTT 465
                      **      ***  *** * ***  *   *   ****** ***  **  * *  *******

consensus_5031#0      CCTGCCGCTGCGTGCGCGACTGGAA-GGGATTGGCCTCGAAGGTGTCAAAGTTCGGTTCG 522
consensus_5031#1      TCAGCCGGGAATTGTAGGATTTCAGCAGGGCTTCCTTCGATTGGGTCAGATTACGCTGCA 525
                       * ****     **   ** *  *   **  *  * ****  * **** * * ** * * 

consensus_5031#0      C-CCGAACCGGGCACGATCAGT--GACACGAAGCC------CTTCGCCGTGCCTACGCCG 573
consensus_5031#1      TATTGACTCGGTAACAGTTTGCTGGAAGCAAAGTTGAATTTCTTCGGCAGTTTTATCTAA 585
                          **  ***  **  *  *   **  * ***        ***** *     **     

consensus_5031#0      AGAATGTCTTCGTACGGGCAGAACCGAATGCTTGAAATCGGACCATTCGTCCGGTGGCGG 633
consensus_5031#1      AAGCTAAAATTCTGCGGGA------GAATGCT-AAAATTGTCCCTTTTCCTCAGTTATTA 638
                      *   *    *  * ****       *******  **** *  ** **    * **     

consensus_5031#0      ATGTANGGCTTCATCTGGGCTTCCGTCGAGCTGTTATCACGCCGGTACACCTCACACACG 693
consensus_5031#1      CCAATCAGTTCCAATAGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTT---------- 688
                             * * **   ** *  * **      *  **  *** * *              

consensus_5031#0      TTGCCCATCGACAGTGCGAGCAGCCCGCGCTGGGACAGCTCGATCTCGGAT 744
consensus_5031#1      ---------------------------------------------------