cluster # 5051

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Anopheles gambiae
cluster # 5051 cluster # 5051 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5051#0 length = 428 sequences # 3

consensus_5051#1 length = 194 sequences # 1

consensusID : consensus_5051#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 428
fasta sequence

                              [CGGAAGCCATTCGATAGGCTTTTCGGGTGTGCGTGTGCGTGGTCTGGTGGGCAGTGGGCAGGCTCCTTGAAGAATGGGTTTGATCAGCAAGTGTTGCATTGTTTTCGGTCTTGGATCGGTTGCGTATTTTGTGCGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGTTCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCTCGAGCTGGCCGACACTGGCTGTCATCTGGCGCTAGGTGTGCGCTGTCCAACAGTCGGCCAAACAATCCGCGACCGGGTGCTGCATCAGTGTCCGTGCGCAACGATTGACACGTTCGTGCTGAAACTCGAATCCCTTGCCAGTGTGGTAGAATTCAGTGCAAACGTTCGCAACCTCAACAAACCGCTGT]

[+] EMBL CNS092Q7             [CGGAAGCCATTCGATAGGCTTTTCGGGTGTGCGTGTGCGTGGTCTGGTGGGCAGTGGGCAGGCTCCTTGAAGAATGGGTTTGATCAGCAAGTGTTGCATTGTTTTCGGTCTTGGATCGGTTGCGTATTTTGTGCGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGTTCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCTCGAGCTGGCCGACATTGGCTGTCATCTGGCGCTAGGTGTGCGCTGTCCAACAGTCGGCCAAACAATCCGCGACCGGGTGCTGCATCAGTGTCCGTGCGCAACGATTGACACGTTCGTGCTGAAACTCGAATCCCTTGCCAGTGTGGTAGAATTCAGTGCA                            ]
[+] EMBL CNS09BLQ             [            GATAGGCTTTTCGGGTGTGCGTGTGCGTGGTCTGGTGGGCAGTGGGCAGGCTCCTTGAAGAATGGGTTTGATCAGCAAGTGTTGCATTGTTTTCGGTCTTGGATCGGTTGCGTATTTTGTGCGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGTTCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCTCGACCCCCCCAACACc                                                                                                                                                                            ]
[+] EMBL AGA284916            [                                                                                                                                                                                 CCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCTCGAGCTGGCCGACCGTGGCTGTCATCTGGCGCTAGGTGTGCGCTGCCCAACAGTCGGCCAAACAATCCGCGACCGGGTGCTGCATCAGTGTCCGTGCGCAACGATTGACACGTTCGTGCTGAAACTCGAATCCCTTGCCAGTGTGGTAGAATTCAGTGAAAACGTTCGCAACCTCAACAAACCGCTGT]




>consensus_5051#0
CGGAAGCCATTCGATAGGCTTTTCGGGTGTGCGTGTGCGTGGTCTGGTGGGCAGTGGGCA
GGCTCCTTGAAGAATGGGTTTGATCAGCAAGTGTTGCATTGTTTTCGGTCTTGGATCGGT
TGCGTATTTTGTGCGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGTTCCA
GAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCT
CGAGCTGGCCGACACTGGCTGTCATCTGGCGCTAGGTGTGCGCTGTCCAACAGTCGGCCA
AACAATCCGCGACCGGGTGCTGCATCAGTGTCCGTGCGCAACGATTGACACGTTCGTGCT
GAAACTCGAATCCCTTGCCAGTGTGGTAGAATTCAGTGCAAACGTTCGCAACCTCAACAA
ACCGCTGT

consensusID : consensus_5051#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence

                              [TTCAAAAAAAATTCACAAAACAAACGGAGAGCAAAGATTGCTGCGCTGTTCTGGCAGCCTTTTTTTGGCTAAAGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGTTCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCTCGAGCTGGCCCCCCC]

[+] EMBL CNS08DZW             [TTCAAAAAAAATTCACAAAACAAACGGAGAGCAAAGATTGCTGCGCTGTTCTGGCAGCCTTTTTTTGGCTAAAGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGTTCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCTCGAGCTGGCCCCCCC]




>consensus_5051#1
TTCAAAAAAAATTCACAAAACAAACGGAGAGCAAAGATTGCTGCGCTGTTCTGGCAGCCT
TTTTTTGGCTAAAGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGTTCCAG
AACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACACTGCTC
GAGCTGGCCCCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5051#0      CGGAAGCCATTCGATAGGCTTTTCGGGTGTGCGTGTGCGTGGTCTGGTGGGCAGTGGGCA 60
consensus_5051#1      ------------------------------------------------------------
                                                                                  

consensus_5051#0      GGCTCCTTGAAGAATGGGTTTGATCAGCAAGTGTTGCATTGTTTTCGGTCTTGGATCGGT 120
consensus_5051#1      ---TTCAAAAAAAATTCACAAAACAAACGGAGA--GCAAAGATTGCTGCGCTGTTCTGGC 55
                         * *   ** ***       *  * *       ***  * ** * *   **    ** 

consensus_5051#0      TGCGTATTTTGTGC----GGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGT 176
consensus_5051#1      AGCCTTTTTTTGGCTAAAGGTGGTATTACATCGGCCGATTGTACGAAAGCAAGCGAAAGT 115
                       ** * ****  **    ******************************************

consensus_5051#0      TCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACAC 236
consensus_5051#1      TCCAGAACGGTGAACTAATCGTGCTGACCGGAGCGAACTCGGGCATCGGTTGGGCGACAC 175
                      ************************************************************

consensus_5051#0      TGCTCGAGCTGGCCGACACTGGCTGTCATCTGGCGCTAGGTGTGCGCTGTCCAACAGTCG 296
consensus_5051#1      TGCTCGAGCTGGCCCCCCC----------------------------------------- 194
                      **************  * *                                         

consensus_5051#0      GCCAAACAATCCGCGACCGGGTGCTGCATCAGTGTCCGTGCGCAACGATTGACACGTTCG 356
consensus_5051#1      ------------------------------------------------------------
                                                                                  

consensus_5051#0      TGCTGAAACTCGAATCCCTTGCCAGTGTGGTAGAATTCAGTGCAAACGTTCGCAACCTCA 416
consensus_5051#1      ------------------------------------------------------------
                                                                                  

consensus_5051#0      ACAAACCGCTGT 428
consensus_5051#1      ------------