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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 680 fasta sequence
[TTTAACGCGACGGGATTTTGTGTTACTAATTGGGTTCCGCGTAAAATTGGTGCGTAAAAAGGTGTGTGCGTGCAAAATAGCACCGTAAAGTTAAAAGAACAAAAAAAAAAACGTGTACAAATAAAAACAAAGAATAAGAAATAGAATTCCGCAAAGAAAAATTGCAAAATATTATACATATACATTGTAATGGAATGAAACCAGTAAATCACTGCCATTTTGTACCAGGGACACACACATCCACGCACGGCGCGAACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTTTTGGTCCAAAGTGGTGAGCATTAGTTTTCCCGTGCCGC--GTGTGTGTGTGAGTGTNATGGGCAAAGAGTAATCAAACGTGGGTGGGTNTAAGCGAATAGAGAAAGGA-ATAAGA--GCGACGCNGTAGGTAAAGAAAATGGGTATGTTGTGTACAGGAAACCCGATCTAAGGTACAGGATCAGAGGACAGAGATTAGATNCACAAATTTTATTAATTAACGAAGGAAAGGATCGTGTGTGAGTGTANGAGAATGAATGAATGAGCGCAGAAATGGTTGCAAAAGGAGTAAGAATGAATGTTGCCGAATGATAGGATGAGTGTAAGATTATTGAATGTCATTTAATATCGAAGAGAATGAATGTGTCACAGGGAAAGCATTAGGATA]
[+] EMBL BX619981 [TTTAACGCGACGGGATTTTGTGTTACTAATTGGGTTCCGCGTAAAATTGGTGCGTAAAAAGGTGTGTGCGTGCAAAATAGCACCGTAAAGTTAAAAGAACAAAAAAAAAAACGTGTACAAATAAAAACAAAGAATAAGAAATAGAATTCCGCAAAGAAAAATTGCAAAATATTATACATATACATTGTAATGGAATGAAACCAGTAAATCACTGCCATTTTGTACCAGGGACACACACATCCACGCACGGCGCGAACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTTTTGGTCCAAAGTGGTGAGCATNAGTTTTCCCGTGCCGC GTGTGTGTGTGAGTGTNATGGGCAAAGAGTAATCAAACGTGGGTGGGTNTAAGCGAATAGAGAAAGGA ATAAGA GCGACGCNGTAGGTAAAGAAAATGGGTATGTTGTGTACAGGAAACCCGATCTAAGGTACAGGATCAGAGGACAGAGATTAGATNCACAAATTTTATTAATTAACGAAGGAAAGGATCGTGTGTGAGTGTANGAGAATGAATGAATGA ]
[+] EMBL BX624300 [ TTAACGCGACGGGATTTTGTGTTACTAATTGGGTTCCGCGTAAAATTGGTGCGTAAAAAGGTGTGTGCGTGCAAAATAGCACCGTAAAGTTAAAAGAACAAAAAAAAAAACGTGTACAAATAAAAACAAAGAATAAGAAATAAAATTCCGCAAAGAAAAATTGCAAAATATTATACATATACATTGTAATGGAATGAAACCAGTAAATCACTGCCATTTTGTACCAGGGACACACACATCCACGCACGGCGCGAACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTTTTGGTCCAAAGTGGTGAGCATTAGTNTCCCCGTGCCGC GTGTGTGTGTGAGTGTAATGGGCAAAGAGTATTC AACGTGGGTGGGTTTAAGCGAATA AGAAAGGANNTAAAA G ]
[+] EMBL AGA284949 [ ACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTTTTGGTCCAAAGTGGTGAGCATTAGTTTTCCCGTGCCGCGTGTGTGTGTGTGTGTGTTATGGGCAAAGAGTAATCAAACGT T TAAGGGAATAGAGAAAGGA ATAAGAGCGCGACGCCGTAGGTAAAGAAAATGGGTATGTTGTGTACAGGAAACCCGATCTAAGGTACAGGATCAGAGGACAGAGATTAGATTCAC AATTTTATTAATTAACGAAGGAAAGGATCGTGTGTGAGTGTAAGAGAATGAATGAATGAGCGCAGAAATGGTTGCAAAAGGAGTAAGAATGAATGTTGCCGAATGATAGGATGAGTGTAAGATTATTGAATGTCATTTAATATCGAAGAGAATGAATGTGTCACAGGGAAAGCATTAGGATA]
consensusID : consensus_5053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[CAGAATCGTCACGAGGGTGNATCGGTNNTAAACTTCTTGTGGGTACATATTTGCACGCACACACCGTTTCTACGGCACCAATTTTACGCGGAACCCAATTAGGTAACAGCAAAATCCCGTCGCGTTAAAATTGCAGGAACATTTTGCTTTGGCAAACAGAGTATAGATCCTTTTCCTTTTTCCTTTTTGGGGCCTTTNATATTCTGAACAATATAAGGCAAAACCCCCGAACGATTCCCCATTCATTTCTGTTGCTGTATTCCCATTTCCTATATTCACTTTCTATGCCGTTCTTGCATTAGTAGTATAANGTAAAACCCACACATTCCAAGGGAATAATTNTGAATTTCGTNCTGTCNGACTGAATACGCAAANGGGANACAATTGGGNNAGCGCTCATGCGTTGTATGGTATCGCGGGGTATCCACTGGCACGGCACATNAGGAGTGGGTCTCCTTGGGAGNGGNTGNCCAGGCAANATGNGCCGACACATTT]
[+] EMBL BX469236 [CAGAATCGTCACGAGGGTGNATCGGTNNTAAACTTCTTGTGGGTACATATTTGCACGCACACACCGTTTCTACGGCACCAATTTTACGCGGAACCCAATTAGGTAACAGCAAAATCCCGTCGCGTTAAAATTGCAGGAACATTTTGCTTTGGCAAACAGAGTATAGATCCTTTTCCTTTTTCCTTTTTGGGGCCTTTNATATTCTGAACAATATAAGGCAAAACCCCCGAACGATTCCCCATTCATTTCTGTTGCTGTATTCCCATTTCCTATATTCACTTTCTATGCCGTTCTTGCATTAGTAGTATAANGTAAAACCCACACATTCCAAGGGAATAATTNTGAATTTCGTNCTGTCNGACTGAATACGCAAANGGGANACAATTGGGNNAGCGCTCATGCGTTGTATGGTATCGCGGGGTATCCACTGGCACGGCACATNAGGAGTGGGTCTCCTTGGGAGNGGNTGNCCAGGCAANATGNGCCGACACATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5053#0 TTTAACGCGACGGGATTTTGTGTTACTAATTGGGTTCCGCGTAAAATTGGTGCGTAAAAA 60
consensus_5053#1 ----------CAGAATC----GTCACGAGGGTGNATCGGTNNTAAACTTCT-TGTGGGTA 45
* * ** ** ** * * ** * *** * * ** *
consensus_5053#0 GGTGTGTGCGTGCAAAATAGCACCGTAAAGTTAAAAGAACAAAAAAAAAAACGTGTACAA 120
consensus_5053#1 CATATTTGCACGCACA----CACCGTT---TCTACGGCACCAAT---------TTTACGC 89
* * *** *** * ****** * * * ** ** * ***
consensus_5053#0 ATAAAAACAAAGAATAAGAAATAGAATTCCGCAAAGA-AAAATTGCAA-AATATTATACA 178
consensus_5053#1 G-GAACCCAATTAGGTAACAGCAAAATCCCGTCGCGTTAAAATTGCAGGAACATTTTGCT 148
** *** * * * * *** *** * ********* ** *** * *
consensus_5053#0 TATACATTGTAATGGAATGAAACCAGTAAATCACTGCCATTTTGTACCAGGGACACACAC 238
consensus_5053#1 TTGGCA--AACAGAGTATAGATCCTTTTCCTTTTTCCTTTTTGGGGCCTTTNATATTCTG 206
* ** * * ** * ** * * * * *** * ** * * *
consensus_5053#0 ATCCACGCACGGCGCGAACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTT 298
consensus_5053#1 AACAATATAAGGCAAAACC---CCCGAACGATTCCCCATTCATTTCTGTTGCTGTATTCC 263
* * * * *** * * * * * * * * **** **
consensus_5053#0 TTGGTCCAAAGTGGTGAGCATTAGTTTTCCCGTGCCGCGTGTGTGTGTGAGTGTNATGGG 358
consensus_5053#1 CATTTCCTA---------TATTCACTTTCT-ATGCCG--TTCTTGCATTAGTAGTATA-- 309
*** * *** **** ***** * ** * *** **
consensus_5053#0 CAAAGAGTAATCAAACGTGGGTGGGTNTAAGCGAATAGAGAAAGGAATAAGAGCGACGCN 418
consensus_5053#1 -ANGTAAAACCCACACAT-------TCCAAGGGAATAATTNTGAATTTCGTNCTGTCNGA 361
* * * ** ** * * *** ***** * * *
consensus_5053#0 GTAGGTAAAGAAAATGGGTATGTTGTGTACAGGAAACCCGATCTAAGGTACAGGATCAGA 478
consensus_5053#1 CTGAATACGCAAANGGGANACAAT---TGGGNNAGCGCTCATGCGTTGTATGGTATCGCG 418
* ** *** ** * * * * * ** *** * ***
consensus_5053#0 GGACAGAGATTAGATNCACAAATTTTATTAATTAACGAAGGAAAGGATCGTGTGTGAGTG 538
consensus_5053#1 GGGTATCCACTGGCACGGCACATN--------------AGGAGTGGGTC-TCCTTGGGAG 463
** * * * * ** ** **** ** ** * ** * *
consensus_5053#0 TANGAGAATGAATGAATGAGCGCAGAAATGGTTGCAAAAGGAGTAAGAATGAATGTTGCC 598
consensus_5053#1 NGGNTGNCCAGGC-AANATGNGCCGACACATTT--------------------------- 495
* ** * ** ** * **
consensus_5053#0 GAATGATAGGATGAGTGTAAGATTATTGAATGTCATTTAATATCGAAGAGAATGAATGTG 658
consensus_5053#1 ------------------------------------------------------------
consensus_5053#0 TCACAGGGAAAGCATTAGGATA 680
consensus_5053#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||