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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 911 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGCCTCCGAAGCGAGCGTACCTCGCTCTCCCGTCTGTGAAGATCAAGCCGAGTCGTATTCATTCATAAGTTATAAAGACGACCGGGAAGATTGCTGCGCTGCTACTGGAAGTACAAGAACGCCGCGGCCTATCAAAGCGATCAGAAGAAGGCAAAAAACAGACGCAGAATTATCTCGCCCCCGGAACGTTCTGGTCTGGTGGGAAGCATTGGAGCGCAGCCAGTGCCAAAAATATAGAGGGTCTATTTGGTCGTGAAAAAGCCTACCGGCAGAGCGATAAGAAGAGGAGCAGAGGAGTTTTTCCCCACTGCTGGAGGACAAGCAAAATACGTCAGCAGGAACAATCTAGAGCACACCAGGAGTCAACGATGGGTCTGAAGTTCCTGCTATTTAATAGTCAACAGAGTCAAAATCTCCATGGACGTGGTAGAAAAATCATGGAGGGTTCGGGCGACGGTTCCCCGCAATCGTCGATGTGGCATGGTGAAGGCGGCTGAGCTCTTCCCGAAGCCGATCCTCGAGAAGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGTGGAATCCGTACCGTTATCTCGGTCAGACAGATGAAGGCATACTGGCACTGTCCAACTATCGGCTGTTCCTGCAGAAGAACACCACCGGTGCCGAAGTGTCCGTCCCGCTTGGCCTGATCGAATCGACGCAAGTGCGTGACCTGTTCCATCTGATCGTGAACTGCAAAGATGCTAGCACCGTACGATGTTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATAACGCTATCGATCGGTGTGCCCGAAACGCTGGAGGCACTGTTTGCGTTCCCGTTTCACGCGTGGGCCTCCGAGTCGCCCACGCTCA]
[+] EMBL BM607297 [CCGCCCACGCGTCCGCCCACGCGTCCGGCCTCCGAAGCGAGCGTACCTCGCTCTCCCGTCTGTGAAGATCAAGCCGAGTCGTATTCATTCATAAGTTATAAAGACGACCGGGAAGATTGCTGCGCTGCTACTGGAAGTACAAGAACGCCGCGGCCTATCAAAGCGATCAGAAGAAGGCAAAAAACAGACGCAGAATTATCTCGCCCCCGGAACGTTCTGGTCTGGTGGGAAGCATTGGAGCGCAGCCAGTGCCAAAAATATAGAGGGTCTATTTGGTCGTGAAAAAGCCTACCGGCAGAGCGATAAGAAGAGGAGCAGAGGAGTTTTTCCCCACTGCTGGAGGACAAGCAAAATACGTCAGCAGGAACAATCTAGAGCACACCAGGAGTCAACGATGGGTCTGAAGTTCCTGCTATTTAATAGTCAACAGAGTCAAAATCTCCATGGACGTGGTAGAAAAATCATGGAGGGTTCGGGCGACGGTTCCCCGCAATCGTCGATGTGGCATGGTGAAGGCGGCTGAGCTCTTCCCGAAGCCGATCCTCGAGAAGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGTGGAATCCGTACCGTTATCTCGGTCAGACAGATGAA ]
[+] EMBL AGA284973 [ AATCGTCGATGT GCATGGTGAAGGCGGCTGAGCTCTTCCCGAAGCCGATCCTCGAGAAGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGT GAATCCGTA CGCTATCTCGGTCAGACAGATGAAGGCATACTGGCACTGTCCAACTATCGGCTGTTCCTGCAGAAGAACACCACCGGTGCCGAAGTGTCCGTCCCGCTTGGCCTGATCGAATCGACGCAAGTGCGTGACCTGTTCCATCTGATCGTGAACTGCAAAGATGCTAGCACCGTACGATGTTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATAACGCTATCGATCGGTGTGCCCGAAACGCTGGAGGCACTGTTTGCGTTCCCGTTTCACGCGTGGGCCTCCGAGTCGCCCACGCTCA]
consensusID : consensus_5054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 781 fasta sequence
[CCGCCCACGCGTCCGGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGTGAATCCGTACGTTATCTCGGTCAGACAGATGAAGGCATACTGGCACTGTCCAACTATCGGCTGTTCCTGCAGAAGAACACCACCGGTGCCGAAGTGTCCGTCCCGCTTGGCCTGATCGAATCGACGCAAGTGCGTGACCTGTTCCATCTGATCGTGAACTGCAAAGATGCCAGCACCGTACGATGTTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATAACGCTATCGATCGGTGTGCCCGAAACGCTGGAGGCCCTGTTTGCGTTTCCGTTTCACGCGTGGGCCTCCGAGTCGCCCACGCTCAACCAGGACAACGAATGGGCCGGCCGTCTGCAGCGCGTCGGCTCGTTCGACGACGAGTTCCGGCGGGAGGCCGAACGGTTACAGTTCGATCTGCAGGGTGCGTGGCGCATCAGCCAGGCGAATGCGGAGTTTAAGCTGTGCCCATCGTACCCGCGGCTGCTGCTGGTGCCGGCCTGCATCTCGGACGATACGCTGCAGAATGTGGCCAGCTTTCGCAGCTCGCGGCGCATACCGGCGGTCGTGTGGCGCCATCAGCGTACCGGCGCGGTCATCGCGCGCTGCAGTCAGCCCGAGGTCGGGTGGCTCGGGTGGCGCAACTCGAAGGATGAGCAGCTGCTGAAGGCGCTGTCCGATGCGTGCTCGTTCGATCGGGGCACGCAGGATAAGGCCGGCGATGGTACGAGACGG]
[+] EMBL BM644894 [CCGCCCACGCGTCCGGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGTGAATCCGTACGTTATCTCGGTCAGACAGATGAAGGCATACTGGCACTGTCCAACTATCGGCTGTTCCTGCAGAAGAACACCACCGGTGCCGAAGTGTCCGTCCCGCTTGGCCTGATCGAATCGACGCAAGTGCGTGACCTGTTCCATCTGATCGTGAACTGCAAAGATGCCAGCACCGTACGATGTTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATAACGCTATCGATCGGTGTGCCCGAAACGCTGGAGGCCCTGTTTGCGTTTCCGTTTCACGCGTGGGCCTCCGAGTCGCCCACGCTCAACCAGGACAACGAATGGGCCGGCCGTCTGCAGCGCGTCGGCTCGTTCGACGACGAGTTCCGGCGGGAGGCCGAACGGTTACAGTTCGATCTGCAGGGTGCGTGGCGCATCAGCCAGGCGAATGCGGAGTTTAAGCTGTGCCCATCGTACCCGCGGCTGCTGCTGGTGCCGGCCTGCATCTCGGACGATACGCTGCAGAATGTGGCCAGCTTTCGCAGCTCGCGGCGCATACCGGCGGTCGTGTGGCGCCATCAGCGTACCGGCGCGGTCATCGCGCGCTGCAGTCAGCCCGAGGTCGGGTGGCTCGGGT ]
[+] EMBL BM630346 [ ccgGTCCAACTATCGGCTGTTCCTGCAGAAGAACACCACCGGTGCCGAAGTGTCCGTCCCGCTTGGCCTGATCGAATCGACGCAAGTGCGTGACCTGTTCCATCTGATCGTGAACTGCAAAGATGCTAGCACCGTACGATGTTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATAACGCTATCGATCGGTGTGCCCGAAACGCTGGAGGCACTGTTTGCGTTCCCGTTTCACGCGTGGGCCTCCGAGTCGCCCACGCTCAACCAGGACAACGAATGGGCCGGCCGTCTGCAGCGCGTCGGCTCGTTCGACGACGAGTTCCGGCGGGAGGCCGAACGGTTACAGTTCGATCTGCAGGGTGCGTGGCGCATCAGCCAGGCGAATGCGGAGTTTAAGCTGTGCCCATCGTACCCGCGGCTGCTGCTGGTGCCGGCCTGCATCTCGGACGATACGCTGCAGAATGTGGCCAGCTTTCGCAGCTCGCGGCGCATACCGGCGGTCGTGTGGCGCCATCAGCGTACCGGCGCGGTGATCGCGCGCTGCAGTCAGCCCGAGGTCGGGTGGCTCGGGTGGCGCAACTCGAAGGATGAGCAGCTGCTGAAGGCGCTGTCCGATGCGTGCTCGTTCGATCGGGGCACGCAGGATAAGGCCGGCGATGGTACGAGACGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5054#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCCTCCGAAGCGAGCGTACCTCGCTCTCCCGTC 60
consensus_5054#1 ------------CCGCCCACGCGTCCGG------GAGGAAGAAAAGCTCACCGTACGATT 42
**************** ** ** * *** * * * *
consensus_5054#0 TGTGAAGATCAAGCCGAGTCGTATTCATTCATAAGTTATAAAGACGACCGGGAAGATTGC 120
consensus_5054#1 TACCGAGCTT--GCCGG------TGAATCCGTACGTTATCT---CGGTCAGACAGATGAA 91
* ** * **** * ** * ** ***** ** * * ****
consensus_5054#0 TGCGCTGCTACTGGAAGTACAAGAACGCCGCGGCCTATCAAAGCGATCAGAAGAAGGCAA 180
consensus_5054#1 GGCA----TACTGGCACTGTCCAA---CTATCGGCTGTTCCTGC----AGAAGAACACCA 140
** ****** * * * * * ** * ** ******* * *
consensus_5054#0 AAAACAGACGCAGAATTATCTCGCCCCCGGAACGTTCTGGTCTGGTGGGAAGCATTGGAG 240
consensus_5054#1 ----CCGGTGCCGAAGTGTC-CGTCCC--GCTTGGCCTGATCGAATCGA---CGCAAGTG 190
* * ** *** * ** ** *** * * *** ** * * * * *
consensus_5054#0 CGCAGCCAGTGCCAAAAATATAGAGGGTCTATTTGGTCGTGAAAAAGCCTACCGGCAGAG 300
consensus_5054#1 CGTGACCTGTTCCATCTG-ATCGTGAACTGCAAAGATGCCAGCACCGTACGATGTTCGTT 249
** ** ** *** ** * * * * * * * *
consensus_5054#0 CGATAAGAAGAGGAGCAGAGGAGTTTTTCCCCACTGCTGGAGGACAAGCAAAATACGTCA 360
consensus_5054#1 TGCCACGTCG--GAGCAGTGCAGCGAATGGC-ACCGGCGGATAACGCTATCGATCGGTGT 306
* * * * ****** * ** * * ** * *** ** ** **
consensus_5054#0 GCAGGAACAATCTAGAGCACACCAGGAGTCAACGAT--GGGTCTGAAGTTCCTGCTATTT 418
consensus_5054#1 GCCCGAAACGCTGGAGGCCCTGTTTGCGTTTCCGTTTCACGCGTGGGCCTCCGAGTCGCC 366
** *** ** * * ** ** * * ** *** *
consensus_5054#0 AATAGTCAACAGAGTCAAAATCTCCATGGACGTGGTAGAAAAATCATGGAGGGTTCGGGC 478
consensus_5054#1 CACGCTCAACCAGGACAACGAATGGGCCGGC-CGTCTGCAGCGCGTCGGCTCGTTCGA-C 424
* ***** * *** * * * * * * ** ***** *
consensus_5054#0 GACGGTTCCCCGCAATCGTCGATGTGGC-ATGGTGAAGGCGGCTGAGCTCTTCCCGAAGC 537
consensus_5054#1 GACGAGTTCCGGCGGGAGGCCGAACGGTTACAGTTCGATCTGCAGGGTGCGTGGCGCATC 484
**** * ** ** * * ** * ** * ** * * * * ** * *
consensus_5054#0 CGATCCTCGAGAAGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGTGGAA 597
consensus_5054#1 --AGCCAGGCGAATGCGGAGTTTAAGCTGTGCCCATCGTAC-CCGCGGCTGCTGCTGGTG 541
* ** * *** * *** ***** * * * *** * *** * ***
consensus_5054#0 TCCGTACCGTTATCTCGGTCAGACAGATGAAGGCATACTGGCA-CTGTC-CAACTATCGG 655
consensus_5054#1 CCGG--CCTGCATCTCGGAC-GATACGCTGCAGAATGTGGCCAGCTTTCGCAGCTCGCGG 598
* * ** ******* * ** * * ** * ** ** ** ** ** ***
consensus_5054#0 C-TGTTCCTGCAGAAG---AACACCACCGGTG--CCGAAGTGTCCGTCCCGCTTGGCCTG 709
consensus_5054#1 CGCATACCGGCGGTCGTGTGGCGCCATCAGCGTACCGGCGCGGTCATCGCGCGCTGC--A 656
* * ** ** * * * *** * * * *** * * * ** *** **
consensus_5054#0 ATCGAATCGACG-CAAGTGCGTGACCTGTTCCATCT--GATCGTGAACTGCAAAGATGCT 766
consensus_5054#1 GTCAGCCCGAGGTCGGGTGGCTCGGGTGGCGCAACTCGAAGGATGAGCAGC--TGCTGAA 714
** *** * * *** * ** ** ** * *** * ** * **
consensus_5054#0 AGCACCGTACGATGTTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATA 826
consensus_5054#1 GGCGCTGTCCGATGCGTGCTCGTTCGATCGGGGCA-CGCA--GGATAAGGCCGGCG---- 767
** * ** ***** * * * **** *** *** * ** ******
consensus_5054#0 ACGCTATCGATCGGTGTGCCCGAAACGCTGGAGGCACTGTTTGCGTTCCCGTTTCACGCG 886
consensus_5054#1 ATGGTACGAGACGG---------------------------------------------- 781
* * ** ***
consensus_5054#0 TGGGCCTCCGAGTCGCCCACGCTCA 911
consensus_5054#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||