cluster # 5057

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Anopheles gambiae
cluster # 5057 cluster # 5057 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5057#0 length = 742 sequences # 2

consensus_5057#1 length = 538 sequences # 1
consensus_5057#2 length = 449 sequences # 1

consensusID : consensus_5057#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 742
fasta sequence

                              [GTTTTCGTTCGCACATTCGGTCCGTTTTGTAGAAAATGTAAAAAGTAACCGATCAAAACCGAGAAGAGCACATGTTGATACAGTATCGACCTCAATGCTGATAAGTGATTAGCTGTGATTCCTTTTTGCCGGACCCGGAATGCAGTTTGCTTAAGATGGCCAGTGTCCCATAGCATCCAGCAGTAGTCTGCCAACCTTTCACATTATCGATGTTGTCCAGCTCAAGAAGAACCGAACCAGGAGGGGAGTTGGAAGAGTATTAAAAACAATAGGAAAACAAATATTTCTTTTTTAACAACAGCAACAAAATTAATTGGCAAAAAAGCATCCACGCATAGGTCGGCGCTTAGGATCAGGAACGATGAGCCAAGTGAAATAGTAATTGTAAATAGAATTACAGTAATATATACTTATGCATATAGCGATATACATGCTCCAGCAACTCACTGCGGTGGGATATAGACTCCACTAGATGTATCTGAACAGCAATCGGTTTAGCACCCAGCCCGAGCACTCATGTAAGTTGTAAATCGATATGAATGAGATAAATATTGAGCAAAACCCAAGCAAGTAGTGTGTGCGTACTGCTGCTAGCACCGTAGACTGTCCGACCGAAAAAAAGCCTTTCCCAAGAGTATACTAGTTGTGTAAAGCGTGGTGTTGTGAGGCATAATGTCGATGGCACCCAAGATACAATCCCCTATGTAATGGGATGATGCGAATGCGAATACTAAACATTACG]

[+] EMBL BX621071             [GTTTTCGTTCGCACATTCGGTCCGTTTTGTAGAAAATGTAAAAAGTAACCGATCAAAACCGAGAAGAGCACATGTTGATACAGTATCGACCTCAATGCTGATAAGTGATTAGCTGTGATTCCTTTTTGCCGGACCCGGAATGCAGTTTGCTTAAGATGGCCAGTGTCCCATAGCATCCAGCAGTAGTCTGCCAACCTTTCACATTATCGATGTTGTCCAGCTCAAGAAGAACCGAACCAGGAGGGGAGTTGGAAGAGTATTAAAAACAATAGGAAAACAAATATTTCTTTTTTAACAACAGCAACAAAATTAATTGGCAAAAAAGCATCCACGCATAGGTCGGCGCTTAGGATCAGGAACGATGAGCCAAGTGAAATAGTAATTGTAAATAGAATTACAGTAATATATACTTATGCATATAGCGATATACATGCTCCAGCAACTCACTGCGGTGGGATATAGACTCCACTAGATGTATCTGAACAGCAATCGGTTTAGCACCCAGCCCGAGCACTCATGTAAGTTGTAAATCGATATGAATGAGATAAATATTGAGCAAAACCCAAGCAAGTAGTGTGTGCGTACTGCTGCTAGCACCGTAGACTGTCCGACCGAAAAAAAGCCTTTCCCAAGAGTATACTAGTTGTGTAAAGCGTGGTGTTGTGAGGCATAATGTCGATGGCACCCAAGATACAATCCCCTATGTAATGGGATGATGCGAATGCGAATACTAAACATTACG]
[+] EMBL AGA285155            [              ATTCGGTCCGTTTTGTAGAAAATGTAAAAAGTAACCGATCAAAACCGAGAAGAGCACATGTTGATACAGTATCGACCTCAATGTTGATAAGTGATTAGCTGTGATTCCTTTTTGCCGGACCCGGAATGCAGTTTGCTTAAGATGGCCAGTGTCCCATAGCATCCAGCAGTAGTCTGCCAACCTTTCACATTATCGATGTTGTCCAGCTCAAGAAGAACCGAACCAGGAGGGCAGGTGGAAGAGTATTAAAAACAATAGGAAAACAAATATTTCTTTTTTAACAACAGCAACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_5057#0
GTTTTCGTTCGCACATTCGGTCCGTTTTGTAGAAAATGTAAAAAGTAACCGATCAAAACC
GAGAAGAGCACATGTTGATACAGTATCGACCTCAATGCTGATAAGTGATTAGCTGTGATT
CCTTTTTGCCGGACCCGGAATGCAGTTTGCTTAAGATGGCCAGTGTCCCATAGCATCCAG
CAGTAGTCTGCCAACCTTTCACATTATCGATGTTGTCCAGCTCAAGAAGAACCGAACCAG
GAGGGGAGTTGGAAGAGTATTAAAAACAATAGGAAAACAAATATTTCTTTTTTAACAACA
GCAACAAAATTAATTGGCAAAAAAGCATCCACGCATAGGTCGGCGCTTAGGATCAGGAAC
GATGAGCCAAGTGAAATAGTAATTGTAAATAGAATTACAGTAATATATACTTATGCATAT
AGCGATATACATGCTCCAGCAACTCACTGCGGTGGGATATAGACTCCACTAGATGTATCT
GAACAGCAATCGGTTTAGCACCCAGCCCGAGCACTCATGTAAGTTGTAAATCGATATGAA
TGAGATAAATATTGAGCAAAACCCAAGCAAGTAGTGTGTGCGTACTGCTGCTAGCACCGT
AGACTGTCCGACCGAAAAAAAGCCTTTCCCAAGAGTATACTAGTTGTGTAAAGCGTGGTG
TTGTGAGGCATAATGTCGATGGCACCCAAGATACAATCCCCTATGTAATGGGATGATGCG
AATGCGAATACTAAACATTACG

consensusID : consensus_5057#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 538
fasta sequence

                              [GTAACCGATCAAAACCGAGAAGAGCACATGTTGATACAGTATCGACCTCAATGTTGATAAGTGATTAGCTGTGATTCCTTTTTGCCGGACCCGGAATGCAGTTTGCTTAAGATGGCCAGTGTCCCATAGCATCCAGCAGTAGTCTGCCAACCTTTCACATTATCGATGTTGTCCAGCTCAAGAAGAACCGAACCAGGAGGGCAGGTGGAAGAGTATTAAAAACAATAGGAAAACAAATATTTCTTTTTTAACAACAGCAACAAAATTAATTGGCAAAAAGGCATCCACGCATAGGTCGGCGCTTAGGATCAGGAAGAGAGAGAGAGAGAGAAAGAGAGATAGAGAGGTAGAGAGAAGTGGGGCGTGTATCGCTAATCGCAAAACAGTGCGTGAATGTGGTTCGCTGTAATAGAGCAATTAAGAAACAGATGAGAAAGAAAGAAACAGTCAGATAGCAAGAGAGCGATATGCAAACACTAATTAAGCAGCAAATGAAGTAGAAGAAAGAAAAAAAAACGATACATATAATAAAGAAAAG]

[+] EMBL BX609546             [GTAACCGATCAAAACCGAGAAGAGCACATGTTGATACAGTATCGACCTCAATGTTGATAAGTGATTAGCTGTGATTCCTTTTTGCCGGACCCGGAATGCAGTTTGCTTAAGATGGCCAGTGTCCCATAGCATCCAGCAGTAGTCTGCCAACCTTTCACATTATCGATGTTGTCCAGCTCAAGAAGAACCGAACCAGGAGGGCAGGTGGAAGAGTATTAAAAACAATAGGAAAACAAATATTTCTTTTTTAACAACAGCAACAAAATTAATTGGCAAAAAGGCATCCACGCATAGGTCGGCGCTTAGGATCAGGAAGAGAGAGAGAGAGAGAAAGAGAGATAGAGAGGTAGAGAGAAGTGGGGCGTGTATCGCTAATCGCAAAACAGTGCGTGAATGTGGTTCGCTGTAATAGAGCAATTAAGAAACAGATGAGAAAGAAAGAAACAGTCAGATAGCAAGAGAGCGATATGCAAACACTAATTAAGCAGCAAATGAAGTAGAAGAAAGAAAAAAAAACGATACATATAATAAAGAAAAG]




>consensus_5057#1
GTAACCGATCAAAACCGAGAAGAGCACATGTTGATACAGTATCGACCTCAATGTTGATAA
GTGATTAGCTGTGATTCCTTTTTGCCGGACCCGGAATGCAGTTTGCTTAAGATGGCCAGT
GTCCCATAGCATCCAGCAGTAGTCTGCCAACCTTTCACATTATCGATGTTGTCCAGCTCA
AGAAGAACCGAACCAGGAGGGCAGGTGGAAGAGTATTAAAAACAATAGGAAAACAAATAT
TTCTTTTTTAACAACAGCAACAAAATTAATTGGCAAAAAGGCATCCACGCATAGGTCGGC
GCTTAGGATCAGGAAGAGAGAGAGAGAGAGAAAGAGAGATAGAGAGGTAGAGAGAAGTGG
GGCGTGTATCGCTAATCGCAAAACAGTGCGTGAATGTGGTTCGCTGTAATAGAGCAATTA
AGAAACAGATGAGAAAGAAAGAAACAGTCAGATAGCAAGAGAGCGATATGCAAACACTAA
TTAAGCAGCAAATGAAGTAGAAGAAAGAAAAAAAAACGATACATATAATAAAGAAAAG

consensusID : consensus_5057#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [CGAGGCAAGAATCCGGCACGATGTACGCTGTACTGTTTTATCATTTACAAAAAAAGTTGCACAAGCAGTGCTACAGTTTTCGTTCGCACATTCGGTCCGTTTTGTAGAAAATGTAAAAAGTAACCGATCAAAACCGAGAAGAGCACATGTTGATACAGTATCGACCTCAATGCTGATAAGTGATTAGCTGTGATTCCTTTTTGCCGGACCCGGAATGCAGTTTGCTTAAGATGGCCAGGTGTCCCATAGGCATCCAGCAGTAGTCTGCCAACCTTTCACAGTTATCGATGTTGTCCAGCTCAAGAAGAACCGGANACCAGGGAAGGGGACGTTGGACAGAGTATTCACGAGAANNCAAATAGGGGACNAAAANCGCAGCGTATTTGTNTCGTTACNCAGATAACCAAACAGGCGAACAAGAAAGTTACAATTTGGGCAAAAANANAGCA]

[+] EMBL BX468848             [CGAGGCAAGAATCCGGCACGATGTACGCTGTACTGTTTTATCATTTACAAAAAAAGTTGCACAAGCAGTGCTACAGTTTTCGTTCGCACATTCGGTCCGTTTTGTAGAAAATGTAAAAAGTAACCGATCAAAACCGAGAAGAGCACATGTTGATACAGTATCGACCTCAATGCTGATAAGTGATTAGCTGTGATTCCTTTTTGCCGGACCCGGAATGCAGTTTGCTTAAGATGGCCAGGTGTCCCATAGGCATCCAGCAGTAGTCTGCCAACCTTTCACAGTTATCGATGTTGTCCAGCTCAAGAAGAACCGGANACCAGGGAAGGGGACGTTGGACAGAGTATTCACGAGAANNCAAATAGGGGACNAAAANCGCAGCGTATTTGTNTCGTTACNCAGATAACCAAACAGGCGAACAAGAAAGTTACAATTTGGGCAAAAANANAGCA]




>consensus_5057#2
CGAGGCAAGAATCCGGCACGATGTACGCTGTACTGTTTTATCATTTACAAAAAAAGTTGC
ACAAGCAGTGCTACAGTTTTCGTTCGCACATTCGGTCCGTTTTGTAGAAAATGTAAAAAG
TAACCGATCAAAACCGAGAAGAGCACATGTTGATACAGTATCGACCTCAATGCTGATAAG
TGATTAGCTGTGATTCCTTTTTGCCGGACCCGGAATGCAGTTTGCTTAAGATGGCCAGGT
GTCCCATAGGCATCCAGCAGTAGTCTGCCAACCTTTCACAGTTATCGATGTTGTCCAGCT
CAAGAAGAACCGGANACCAGGGAAGGGGACGTTGGACAGAGTATTCACGAGAANNCAAAT
AGGGGACNAAAANCGCAGCGTATTTGTNTCGTTACNCAGATAACCAAACAGGCGAACAAG
AAAGTTACAATTTGGGCAAAAANANAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5057#0      ------------------------------------------------------------
consensus_5057#1      ------------------------------------------------------------
consensus_5057#2      CGAGGCAAGAATCCGGCACGATGTACGCTGTACTGTTTTATCATTTACAAAAAAAGTTGC 60
                                                                                  

consensus_5057#0      ---------------GTTTTCGTTCGCACATTCGGTCCGTTTTGTAGAAAATGTAAAAAG 45
consensus_5057#1      -----------------------------------------------------------G 1
consensus_5057#2      ACAAGCAGTGCTACAGTTTTCGTTCGCACATTCGGTCCGTTTTGTAGAAAATGTAAAAAG 120
                                                                                 *

consensus_5057#0      TAACCGATCAAAACCGAGAAGAGCACATGTTGATACAGTATCGACCTCAATGCTGATAAG 105
consensus_5057#1      TAACCGATCAAAACCGAGAAGAGCACATGTTGATACAGTATCGACCTCAATGTTGATAAG 61
consensus_5057#2      TAACCGATCAAAACCGAGAAGAGCACATGTTGATACAGTATCGACCTCAATGCTGATAAG 180
                      **************************************************** *******

consensus_5057#0      TGATTAGCTGTGATTCCTTTTTGCCGGACCCGGAATGCAGTTTGCTTAAGATGGCCAG-T 164
consensus_5057#1      TGATTAGCTGTGATTCCTTTTTGCCGGACCCGGAATGCAGTTTGCTTAAGATGGCCAG-T 120
consensus_5057#2      TGATTAGCTGTGATTCCTTTTTGCCGGACCCGGAATGCAGTTTGCTTAAGATGGCCAGGT 240
                      ********************************************************** *

consensus_5057#0      GTCCCATAG-CATCCAGCAGTAGTCTGCCAACCTTTCACA-TTATCGATGTTGTCCAGCT 222
consensus_5057#1      GTCCCATAG-CATCCAGCAGTAGTCTGCCAACCTTTCACA-TTATCGATGTTGTCCAGCT 178
consensus_5057#2      GTCCCATAGGCATCCAGCAGTAGTCTGCCAACCTTTCACAGTTATCGATGTTGTCCAGCT 300
                      ********* ****************************** *******************

consensus_5057#0      CAAGAAGAACCG--AACCAGGAGGGGAGTTGGAAGAGTATTAAAAACAATAGGAAAACAA 280
consensus_5057#1      CAAGAAGAACCG--AACCAGGAGGGCAGGTGGAAGAGTATTAAAAACAATAGGAAAACAA 236
consensus_5057#2      CAAGAAGAACCGGANACCAGGGAAGGGGACGTTGGACAG--AGTATTCACGAGAANNCAA 358
                      ************   ******   *  *  *   **     *  *   *   ***  ***

consensus_5057#0      ATATTTCTTTTTTAACAACAGCAACAAAATTA-ATTGGCAAAAAAGCATCCACGCATAGG 339
consensus_5057#1      ATATTTCTTTTTTAACAACAGCAACAAAATTA-ATTGGCAAAAAGGCATCCACGCATAGG 295
consensus_5057#2      ATAGGGGACN----AAAANCGCAGCGTATTTGTNTCGTTACNCAGATAACCAAACA---- 410
                      ***           * **  *** *  * **   * *  *   *   * ***  **    

consensus_5057#0      TCGGCGCTTAGGATCAGGAACGATGAGCCA-AGTGAAATAGTAATTGTAAATAGAATTAC 398
consensus_5057#1      TCGGCGCTTAGGATCAGGAAGAGAGAGAGAGAGAGAAAGAGAGATAGAGAGGTAGAGAGA 355
consensus_5057#2      --GGCGAACAAGAAAGTTACAATTTGGGCAAAAANANAGCA------------------- 449
                        ****   * **     *       *  * *   * *                      

consensus_5057#0      AGTAATATATACTTATGCATATAGCGATATA-CATGCTCCAGCAACTCACTGCGGTGGGA 457
consensus_5057#1      AGTGGGGCGTGTAT-CGCTAATCGCAAAACAGTGCGTGAATGTGGTTCGCTGTAATAGAG 414
consensus_5057#2      ------------------------------------------------------------
                                                                                  

consensus_5057#0      TATAGACTCCACTAGATGTATCTGAACAGCAATCGGTTTAGCACCCAGCCCGAGCACTCA 517
consensus_5057#1      CA---ATTAAGAAACAGATGAGAAAGAAAGAAACAGTCAGATAGCAAGA--GAGCGAT-A 468
consensus_5057#2      ------------------------------------------------------------
                                                                                  

consensus_5057#0      TGTAAGTTGTAAATCGATA-TGAATGAGATAAAT--ATTGAGCAAAACCCAAGCAAGTAG 574
consensus_5057#1      TGCAAACACTAATTAAGCAGCAAATGAAGTAGAAGAAAGAAAAAAAAACGATACATATAA 528
consensus_5057#2      ------------------------------------------------------------
                                                                                  

consensus_5057#0      TGTGTGCGTACTGCTGCTAGCACCGTAGACTGTCCGACCGAAAAAAAGCCTTTCCCAAGA 634
consensus_5057#1      TAAAGAAAAG-------------------------------------------------- 538
consensus_5057#2      ------------------------------------------------------------
                                                                                  

consensus_5057#0      GTATACTAGTTGTGTAAAGCGTGGTGTTGTGAGGCATAATGTCGATGGCACCCAAGATAC 694
consensus_5057#1      ------------------------------------------------------------
consensus_5057#2      ------------------------------------------------------------
                                                                                  

consensus_5057#0      AATCCCCTATGTAATGGGATGATGCGAATGCGAATACTAAACATTACG 742
consensus_5057#1      ------------------------------------------------
consensus_5057#2      ------------------------------------------------