cluster # 5062

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Anopheles gambiae
cluster # 5062 cluster # 5062 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5062#0 length = 706 sequences # 1

consensus_5062#1 length = 671 sequences # 2
consensus_5062#2 length = 411 sequences # 1

consensusID : consensus_5062#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [CCGCGCACAGCAGACAGCAGAAACACGCATGCGAAATGTACAAACACTTGAGGAAACCGCTGTAAAGTGTTGTTATTTTTCACATTCCTTTAACGCTCCGCGTCAAAAGAATCGAACTCAACTTCGACCCAGCTGAACAATACTGCAACAATGGAAGGCAAAGCAAAACTAAACACTGGAAGAATTCAACACCGAATGAATAGCGTCCACACTACACTCCGCTTGATGGAAAAGTAACATAGAAGCAAGATTATGGTCACTCCTGAACAATGTGCTAGAATAATGGCAAAACTCTCCCAACACACACACACAAACACACAAAGGTAATAGAGCGAATTGTGCGCCTATAAGCCAGAGCAAGAACCGCGAACATGAACGCACGCAAACCGAGAAGGAAACAAAAAAAAAATTGGAAGCAGAAAAAACGATACAAATGCTTTTAGAGAATGCTAAGTGACACCCTGAACAAACATGGCCGAAAGAGAAATTGGATAAATCTAAAGCCCTCGAAACAAGCTTGTATCACTGCCAGATATAAAAGAGAAGACCAAACAAAACAAAACAAGATGAAAAATGAAATGCAAAACGAAACTACTATCATAAGCGAATTCACAAAACAAAGCAAAATAATATAGAAGATTTGGAGTAGAAGAAAACATAGATGAGCAAAAGAGAAACACTAAATAACTAAATATGGATAACCACA]

[+] EMBL BM579055             [CCGCGCACAGCAGACAGCAGAAACACGCATGCGAAATGTACAAACACTTGAGGAAACCGCTGTAAAGTGTTGTTATTTTTCACATTCCTTTAACGCTCCGCGTCAAAAGAATCGAACTCAACTTCGACCCAGCTGAACAATACTGCAACAATGGAAGGCAAAGCAAAACTAAACACTGGAAGAATTCAACACCGAATGAATAGCGTCCACACTACACTCCGCTTGATGGAAAAGTAACATAGAAGCAAGATTATGGTCACTCCTGAACAATGTGCTAGAATAATGGCAAAACTCTCCCAACACACACACACAAACACACAAAGGTAATAGAGCGAATTGTGCGCCTATAAGCCAGAGCAAGAACCGCGAACATGAACGCACGCAAACCGAGAAGGAAACAAAAAAAAAATTGGAAGCAGAAAAAACGATACAAATGCTTTTAGAGAATGCTAAGTGACACCCTGAACAAACATGGCCGAAAGAGAAATTGGATAAATCTAAAGCCCTCGAAACAAGCTTGTATCACTGCCAGATATAAAAGAGAAGACCAAACAAAACAAAACAAGATGAAAAATGAAATGCAAAACGAAACTACTATCATAAGCGAATTCACAAAACAAAGCAAAATAATATAGAAGATTTGGAGTAGAAGAAAACATAGATGAGCAAAAGAGAAACACTAAATAACTAAATATGGATAACCACA]




>consensus_5062#0
CCGCGCACAGCAGACAGCAGAAACACGCATGCGAAATGTACAAACACTTGAGGAAACCGC
TGTAAAGTGTTGTTATTTTTCACATTCCTTTAACGCTCCGCGTCAAAAGAATCGAACTCA
ACTTCGACCCAGCTGAACAATACTGCAACAATGGAAGGCAAAGCAAAACTAAACACTGGA
AGAATTCAACACCGAATGAATAGCGTCCACACTACACTCCGCTTGATGGAAAAGTAACAT
AGAAGCAAGATTATGGTCACTCCTGAACAATGTGCTAGAATAATGGCAAAACTCTCCCAA
CACACACACACAAACACACAAAGGTAATAGAGCGAATTGTGCGCCTATAAGCCAGAGCAA
GAACCGCGAACATGAACGCACGCAAACCGAGAAGGAAACAAAAAAAAAATTGGAAGCAGA
AAAAACGATACAAATGCTTTTAGAGAATGCTAAGTGACACCCTGAACAAACATGGCCGAA
AGAGAAATTGGATAAATCTAAAGCCCTCGAAACAAGCTTGTATCACTGCCAGATATAAAA
GAGAAGACCAAACAAAACAAAACAAGATGAAAAATGAAATGCAAAACGAAACTACTATCA
TAAGCGAATTCACAAAACAAAGCAAAATAATATAGAAGATTTGGAGTAGAAGAAAACATA
GATGAGCAAAAGAGAAACACTAAATAACTAAATATGGATAACCACA

consensusID : consensus_5062#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 671
fasta sequence

                              [CAACACACACACACAAACACACAAAGGTAATAGAGCGAATTGTGCGCCTATAAGCCAGAGCAAGAACCGCGAACATGAACGCACGCAAACCAAAAAAAAAAAAAAACATACGGTACCATTACCCATAACACGGGGTTAGTTGATGTATTATGGAAACAGAAAGTGAAACGGAAATTTTGGCTAAATTTGTGTGAGTGTATGTGTGTTACAGTACATAAAATTAACAGAAAAGCGATCAAAAAGCAAACAAAAAAAGAAAAAGTTAAAAATTAAACACAAACTAATGATTTAATTTCGAAACCCCTTTTCGAATCGTTCTATTGTAATACTGCTGCTGAATACATTTGAATTGACGTGAAATCATATAGTGAAAGTATAAAACAAGCACGCAAAATGAATAGAAGACAAACAAAAGAAACAAACAATCAATGCATAATCCCAAGGGCGCAGTCCTGCACATTTGCTGCACAGACAATTGGTAGTTTTTAATGCTTTTTTTATCATTTAATCTATCATTACCGTGTCGTCACCCTTTGGTGGGTATTAAAATTAATGCAATACAAATAGATCTTAACACTTTTAAGCTAACAACACACCGCATCCACCCAAACCTTTCTCTCACAAACACCCTCCCTAATTGGCGTAGAGTATATTGTAGCAAACGGAGCACA]

[+] EMBL BX602447             [CAACACACACACACAAACACACAAAGGTAATAGAGCGAATTGTGCGCCTATAAGCCAGAGCAAGAACCGCGAACATGAACGCACGCAAACCAAAAAAAAAAAAAAACATACGGTACCATTACCCATAACACGGGGTTAGTTGATGTATTATGGAAACAGAAAGTGAAACGGAAATTTTGGCTAAATTTGTGTGAGTGTATGTGTGTTACAGTACATAAAATTAACAGAAAAGCGATCAAAAAGCAAACAAAAAAAGAAAAAGTTAAAAATTAAACACAAACTAATGATTTAATTTCGAAACCCCTTTTCGAATCGTTCTATTGTAATACTGCTGCTGAATACATTTGAATTGACGTGAAATCATATAGTGAAAGTATAAAACAAGCACGCAAAATGAATAGAAGACAAACAAAAGAAACAAACAATCAATGCATAATCCCAAGGGCGCAGTCCTGCACATTTGCTGCACAGACAATTGGTAGTTTTTAATGCTTTTTTTATCATTTAATCTATCATTACCGTGTCGTCACCCTTTGGTGGGTATTAAAATTAATGCAATACAAATAGATCTTAACACTTTTAAGCTAACAACACACCGCATCCACCCAAACCTTTCTCTCACAAACACCCTCCCTAATTGGCGTAGAGTATATTGTAGCAAACGGAGCACA]
[-] EMBL CNS08M5L             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gCATTTAATCTATCATTACCGTGTCGTCACCCTTTGGTGGGTATTAAAATTAATGCAATACAAATAGATCTTAACACTTTTAAGCTAGCAACACAC                                                                           ]




>consensus_5062#1
CAACACACACACACAAACACACAAAGGTAATAGAGCGAATTGTGCGCCTATAAGCCAGAG
CAAGAACCGCGAACATGAACGCACGCAAACCAAAAAAAAAAAAAAACATACGGTACCATT
ACCCATAACACGGGGTTAGTTGATGTATTATGGAAACAGAAAGTGAAACGGAAATTTTGG
CTAAATTTGTGTGAGTGTATGTGTGTTACAGTACATAAAATTAACAGAAAAGCGATCAAA
AAGCAAACAAAAAAAGAAAAAGTTAAAAATTAAACACAAACTAATGATTTAATTTCGAAA
CCCCTTTTCGAATCGTTCTATTGTAATACTGCTGCTGAATACATTTGAATTGACGTGAAA
TCATATAGTGAAAGTATAAAACAAGCACGCAAAATGAATAGAAGACAAACAAAAGAAACA
AACAATCAATGCATAATCCCAAGGGCGCAGTCCTGCACATTTGCTGCACAGACAATTGGT
AGTTTTTAATGCTTTTTTTATCATTTAATCTATCATTACCGTGTCGTCACCCTTTGGTGG
GTATTAAAATTAATGCAATACAAATAGATCTTAACACTTTTAAGCTAACAACACACCGCA
TCCACCCAAACCTTTCTCTCACAAACACCCTCCCTAATTGGCGTAGAGTATATTGTAGCA
AACGGAGCACA

consensusID : consensus_5062#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [ATTAACGTAAGCTATTAGTTGAGATACACTCGCGTACACACACAACCAATGATGATGATGATTAGTCTCACCCCGAAAAACTGGCAAAAAAAAAAACATACGGTACCATTACCCATAACACGGTGTTAGTTGATGTATTATGGAAACAGAAAGTGAAACGGAAATTTTGGCTAAATTTGTGTGAGTGTATGTGTGTTACAGTACATAAAATTAACAGAAAAGCGATCAAAAAGCAAACAAAAAAAGAAAAAGTTAAAAATTAAACACAAACTAATGATTTAATTTCGAAACCCCTTTTCGAATCGTTCTATTGTAATACTGCTGCTGAATACATTTGAATTGACGTGAAATCATATAGTGAAAGTATAAAACAAGCACGCAAAATGAATAGAAGACAAACAAAAGAAACAA]

[+] EMBL AGA285465            [ATTAACGTAAGCTATTAGTTGAGATACACTCGCGTACACACACAACCAATGATGATGATGATTAGTCTCACCCCGAAAAACTGGCAAAAAAAAAAACATACGGTACCATTACCCATAACACGGTGTTAGTTGATGTATTATGGAAACAGAAAGTGAAACGGAAATTTTGGCTAAATTTGTGTGAGTGTATGTGTGTTACAGTACATAAAATTAACAGAAAAGCGATCAAAAAGCAAACAAAAAAAGAAAAAGTTAAAAATTAAACACAAACTAATGATTTAATTTCGAAACCCCTTTTCGAATCGTTCTATTGTAATACTGCTGCTGAATACATTTGAATTGACGTGAAATCATATAGTGAAAGTATAAAACAAGCACGCAAAATGAATAGAAGACAAACAAAAGAAACAA]




>consensus_5062#2
ATTAACGTAAGCTATTAGTTGAGATACACTCGCGTACACACACAACCAATGATGATGATG
ATTAGTCTCACCCCGAAAAACTGGCAAAAAAAAAAACATACGGTACCATTACCCATAACA
CGGTGTTAGTTGATGTATTATGGAAACAGAAAGTGAAACGGAAATTTTGGCTAAATTTGT
GTGAGTGTATGTGTGTTACAGTACATAAAATTAACAGAAAAGCGATCAAAAAGCAAACAA
AAAAAGAAAAAGTTAAAAATTAAACACAAACTAATGATTTAATTTCGAAACCCCTTTTCG
AATCGTTCTATTGTAATACTGCTGCTGAATACATTTGAATTGACGTGAAATCATATAGTG
AAAGTATAAAACAAGCACGCAAAATGAATAGAAGACAAACAAAAGAAACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5062#1      -------CAACACACACACACAAACACACAAAGGTAATAGAGCGAATTGTGCGCCTATAA 53
consensus_5062#2      -------------ATTAACGTAAGCTATTAGTTGAGATACACTCG--CGTACACACACAA 45
consensus_5062#0      CCGCGCACAGCAGACA-GCAGAAACACGCATGCGAAATGTACAAACACTTGAGGAAACCG 59
                                   *    *  ** *    *   *  **  *        *      *   

consensus_5062#1      GCCAGAGCAAGAACCGCGAACATGAACGCACGCAAACCAAAAAAAAAAAAAAACATACGG 113
consensus_5062#2      CCAATGATGATGATGATTAGTCTCACCCC--GAAAAACTGGCAAAAAAAAAAACATACGG 103
consensus_5062#0      CTGTAAAGTGTTGTTATTTTTCACATTCCTTTAACGCTCCGCGTCAAAAGAATCGAACTC 119
                                              *   *    *           **** ** *  **  

consensus_5062#1      TACCATTACCCATAACACGGGGTTAGTTGATGTATTATGGAAACAGAAAGTGAAACGGAA 173
consensus_5062#2      TACCATTACCCATAACACGGTGTTAGTTGATGTATTATGGAAACAGAAAGTGAAACGGAA 163
consensus_5062#0      AACTTCGACCCA----GCTGAACAA--TACTGCAACAATGGAAGGCAAAGCAAAACTAAA 173
                       **    *****     * *    *  *  ** *  *  * **   ****  ****  **

consensus_5062#1      ATTTTGGCTAAATTTGTGT-GAGTGTATGTGTGTTACAGTACA-TAAAATTAACAGAAAA 231
consensus_5062#2      ATTTTGGCTAAATTTGTGT-GAGTGTATGTGTGTTACAGTACA-TAAAATTAACAGAAAA 221
consensus_5062#0      CACTGGAAGAATTCAACACCGAATGAATAGCGTCCACACTACACTCCGCTTGATGGAAAA 233
                         * *   ** *       ** ** **       *** **** *    ** *  *****

consensus_5062#1      GCGATCAAAAAGCAAACAAAAAAAGAAAAAGTTAAAAATTAAACACAAACTAATGATTTA 291
consensus_5062#2      GCGATCAAAAAGCAAACAAAAAAAGAAAAAGTTAAAAATTAAACACAAACTAATGATTTA 281
consensus_5062#0      GTAACATAGAAGCAA--GATTATGGTCACTCCTGAACAATGTGC-TAGAATAATGGCAAA 290
                      *  *   * ******   *  *  *  *    * ** * *   *  * * *****    *

consensus_5062#1      ATT-TCGAAACCCCTTTTCG-AATCGTTCTATTGTAATACTGCTG-CTGAATACATTTGA 348
consensus_5062#2      ATT-TCGAAACCCCTTTTCG-AATCGTTCTATTGTAATACTGCTG-CTGAATACATTTGA 338
consensus_5062#0      ACTCTCCCAACACACACACACAAACACACAAAGGTAATAGAGCGAATTGTGCGCCTATAA 350
                      * * **  *** *     *  ** *   * *  ******  **    **    * * * *

consensus_5062#1      ATTGACGTGA-AATCATATA-GTGAAAGTATA-AAAC----AAGCACGCAAAATGAA--- 398
consensus_5062#2      ATTGACGTGA-AATCATATA-GTGAAAGTATA-AAAC----AAGCACGCAAAATGAA--- 388
consensus_5062#0      GCCAGAGCAAGAACCGCGAACATGAACGCACGCAAACCGAGAAGGAAACAAAAAAAAAAT 410
                            *  * ** *    *  **** * *   ****    *** *  *****  **   

consensus_5062#1      TAGAAGACAAACAAAAGAAACAAACAATCAATGCATAATCCCAAGGGCGCAGTCCTGCAC 458
consensus_5062#2      TAGAAGACAAACAAAAGAAACAA------------------------------------- 411
consensus_5062#0      TGGAAGCAGAAAAAACGATACAAATGCTTTTAGAGAATGCTAAGTGACACCCTGAACAAA 470
                      * ****   ** *** ** ****                                     

consensus_5062#1      ATTTGCTGCACAGACAATTGGTAGTTTTTAATGCTTTTTTTATCATTTAATCTATCATTA 518
consensus_5062#2      ------------------------------------------------------------
consensus_5062#0      CATGGCCGAAAGAGAAATTGGATAAATCTAAAGCCCTCGAAACAAGCT--TGTATCACTG 528
                                                                                  

consensus_5062#1      CCGTGTCGTCACCCTTTGGTGGGTATTAAAATTAATGCAATACAAATAGATCTTAACACT 578
consensus_5062#2      ------------------------------------------------------------
consensus_5062#0      CCAGATATAAAAG---AGAAGACCAAACAAAACAAAACAAGATGAAAAATGAAATGCAAA 585
                                                                                  

consensus_5062#1      TTTAAGCTAACAACACAC-CGCATCCACCCAAACCTTTCTCTCACAAACACCCTCCCTAA 637
consensus_5062#2      ------------------------------------------------------------
consensus_5062#0      ACGAAACTACTATCATAAGCGAATTCACAAAACAAAGCAAAATAATATAGAAGATTTGGA 645
                                                                                  

consensus_5062#1      TTGGCGTAGAGTATATTGTAGCAAACGGAGCACA-------------------------- 671
consensus_5062#2      ------------------------------------------------------------
consensus_5062#0      GTAGAAGAAAACATAGATGAGCAAAAGAGAAACACTAAATAACTAAATATGGATAACCAC 705
                                                                                  

consensus_5062#1      -
consensus_5062#2      -
consensus_5062#0      A 706