cluster # 5063

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Anopheles gambiae
cluster # 5063 cluster # 5063 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5063#0 length = 686 sequences # 1

consensus_5063#1 length = 495 sequences # 3

consensusID : consensus_5063#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [AATCGCCCCGAGGTCAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGGTAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTACGACAAGGTTGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTTGTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCACGCACAACTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCGCACGGGCGGCATCGAGCAGGGCACGCCGGTCGATTTAGTGCTTAGCTGTGTGGACAACTTTGAGGCACGCATGGCGATCAACACGGCTTGCAACGAGCTCAGTCTGAACTGGTTCGAATCGGGCGTGTCGGAAAATGCCGTCTCCGGTCACATACAGTTCATACGGCCGGGCGAGACGGCCTGCTTTGCCTGCGCTCCGCCGCTCGTGGTGGCGGAAAACATCGACGAGAAGACGCTAAAGCGGGAAGGCGTTTGTGCGGCCAGTCTGCCCACGACGATGGGCATTGTGGCGGGCATGCTGGTACAAAATACGCTCAAGTATTATGCTTAACTTCGGCACCGTGTCGGACTACCTCGGGTATAATGCCATGATCGATTTCTTTCCCCGCATGAGG]

[+] EMBL AL932111             [AATCGCCCCGAGGTCAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGGTAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTACGACAAGGTTGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTTGTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCACGCACAACTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCGCACGGGCGGCATCGAGCAGGGCACGCCGGTCGATTTAGTGCTTAGCTGTGTGGACAACTTTGAGGCACGCATGGCGATCAACACGGCTTGCAACGAGCTCAGTCTGAACTGGTTCGAATCGGGCGTGTCGGAAAATGCCGTCTCCGGTCACATACAGTTCATACGGCCGGGCGAGACGGCCTGCTTTGCCTGCGCTCCGCCGCTCGTGGTGGCGGAAAACATCGACGAGAAGACGCTAAAGCGGGAAGGCGTTTGTGCGGCCAGTCTGCCCACGACGATGGGCATTGTGGCGGGCATGCTGGTACAAAATACGCTCAAGTATTATGCTTAACTTCGGCACCGTGTCGGACTACCTCGGGTATAATGCCATGATCGATTTCTTTCCCCGCATGAGG]




>consensus_5063#0
AATCGCCCCGAGGTCAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGGTAGCGTAAC
GGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTACGACAAGGT
TGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTTGTCGAAGGT
GGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCACGCACAA
CTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCGCACGGGCGG
CATCGAGCAGGGCACGCCGGTCGATTTAGTGCTTAGCTGTGTGGACAACTTTGAGGCACG
CATGGCGATCAACACGGCTTGCAACGAGCTCAGTCTGAACTGGTTCGAATCGGGCGTGTC
GGAAAATGCCGTCTCCGGTCACATACAGTTCATACGGCCGGGCGAGACGGCCTGCTTTGC
CTGCGCTCCGCCGCTCGTGGTGGCGGAAAACATCGACGAGAAGACGCTAAAGCGGGAAGG
CGTTTGTGCGGCCAGTCTGCCCACGACGATGGGCATTGTGGCGGGCATGCTGGTACAAAA
TACGCTCAAGTATTATGCTTAACTTCGGCACCGTGTCGGACTACCTCGGGTATAATGCCA
TGATCGATTTCTTTCCCCGCATGAGG

consensusID : consensus_5063#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 495
fasta sequence

                              [CCGGAACAGGAATAAAGCTACAGTTAACAGAAAGCTGAGCATACTTGCTTGTGATTAGTATGGAGAAATCGAACGAAGGTGCTAAAATGGGACGAGAACGGATAGAAAAAATGTCCGCAGAAGTGGTGGATTCTAACCCCTACAGTCGCCTGATGGCTCTGCAGCGCATGGGAATTGTGAAAGAGTACGAGCGGATCCGGCAAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGGTAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTACGACAAGGTTGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTTGTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCACGCACAACTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCGCACGGGCGGCATCGAGC]

[+] EMBL BM641616             [CCGGAACAGGAATAAAGCTACAGTTAACAGAAAGCTGAGCATACTTGCTTGTGATTAGTATGGAGAAATCGAACGAAGGTGCTAAAATGGGACGAGAACGGATAGAAAAAATGTCCGCAGAAGTGGTGGATTCTAACCCCTACAGTCGCCTGATGGCTCTGCAGCGCATGGGAATTGTGAAAGAGTACGAGCGGATCCGGCAAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGGTAGCGTAACGGCGGACATGCTGACCCGGTGCGGTATCGGCAAGCTGATGCTGTTCGACTACGACAAGGTTGAGCTGGCGAATATGAATCGACTATTCTTTACCCCGGACCAGGCGGGCTTGTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCACGCACAACTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCGCACGGGCGGCATCGAGC]
[+] EMBL AGA285510            [                                                                 AAATCGAACGAAGGTGCTAAAATGGGACGAGAACGGATCGAAAAAATGTCCGCAGAAGTGGTGGATTCTAACCCCTACAGTCGCCTGATGGCTCTGCAGCGCATGGGAATTGTGAAAGAGTACGAGCGGATCCGGCAAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGGTAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTACGACAAGGTTGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTTGTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCACGCACAACTACAACATCACGACGGTGGACA                                             ]
[+] EMBL AL933360             [                                                                                                                                                                                                       tttAAAGAGTGTGGCCGTTGTCCGCGT NGAGGTGTCGGTAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGC AGCTGATGCTGTTTGACTACGACAAGGTTGAGCTGGCTAATATGAATCGACTG TCTTTACCCCGGACCA GCGGGCTTGTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCACGCACAACTAC ACATCACGACGGT                                                  ]




>consensus_5063#1
CCGGAACAGGAATAAAGCTACAGTTAACAGAAAGCTGAGCATACTTGCTTGTGATTAGTA
TGGAGAAATCGAACGAAGGTGCTAAAATGGGACGAGAACGGATAGAAAAAATGTCCGCAG
AAGTGGTGGATTCTAACCCCTACAGTCGCCTGATGGCTCTGCAGCGCATGGGAATTGTGA
AAGAGTACGAGCGGATCCGGCAAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGGTA
GCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTACG
ACAAGGTTGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTTGT
CGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCACCA
CGCACAACTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCGCA
CGGGCGGCATCGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5063#0      ------------------------------------------------------------
consensus_5063#1      CCGGAACAGGAATAAAGCTACAGTTAACAGAAAGCTGAGCATACTTGCTTGTGATTAGTA 60
                                                                                  

consensus_5063#0      ------------------------------------------------------------
consensus_5063#1      TGGAGAAATCGAACGAAGGTGCTAAAATGGGACGAGAACGGATAGAAAAAATGTCCGCAG 120
                                                                                  

consensus_5063#0      ------------------------------------------------------------
consensus_5063#1      AAGTGGTGGATTCTAACCCCTACAGTCGCCTGATGGCTCTGCAGCGCATGGGAATTGTGA 180
                                                                                  

consensus_5063#0      ---------AATCGCCCCGAGGTCAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGG 51
consensus_5063#1      AAGAGTACGAGCGGATCCG--GCAAAAGAGTGTGGCCGTTGTCGGCGTCGGAGGTGTCGG 238
                               *   *  ***  *  ************************************

consensus_5063#0      TAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTA 111
consensus_5063#1      TAGCGTAACGGCGGACATGCTGACACGGTGCGGTATCGGCAAGCTGATGCTGTTTGACTA 298
                      ************************************************************

consensus_5063#0      CGACAAGGTTGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTT 171
consensus_5063#1      CGACAAGGTTGAGCTGGCTAATATGAATCGACTGTTCTTTACCCCGGACCAGGCGGGCTT 358
                      ************************************************************

consensus_5063#0      GTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCAC 231
consensus_5063#1      GTCGAAGGTGGAAGCTGCCGCGAAAACGCTCAACTTTATCAACCCGGACGTGGCAATCAC 418
                      ************************************************************

consensus_5063#0      CACGCACAACTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCG 291
consensus_5063#1      CACGCACAACTACAACATCACGACGGTGGACAACTTTGACCACTTTCTCGGCGCTATTCG 478
                      ************************************************************

consensus_5063#0      CACGGGCGGCATCGAGCAGGGCACGCCGGTCGATTTAGTGCTTAGCTGTGTGGACAACTT 351
consensus_5063#1      CACGGGCGGCATCGAGC------------------------------------------- 495
                      *****************                                           

consensus_5063#0      TGAGGCACGCATGGCGATCAACACGGCTTGCAACGAGCTCAGTCTGAACTGGTTCGAATC 411
consensus_5063#1      ------------------------------------------------------------
                                                                                  

consensus_5063#0      GGGCGTGTCGGAAAATGCCGTCTCCGGTCACATACAGTTCATACGGCCGGGCGAGACGGC 471
consensus_5063#1      ------------------------------------------------------------
                                                                                  

consensus_5063#0      CTGCTTTGCCTGCGCTCCGCCGCTCGTGGTGGCGGAAAACATCGACGAGAAGACGCTAAA 531
consensus_5063#1      ------------------------------------------------------------
                                                                                  

consensus_5063#0      GCGGGAAGGCGTTTGTGCGGCCAGTCTGCCCACGACGATGGGCATTGTGGCGGGCATGCT 591
consensus_5063#1      ------------------------------------------------------------
                                                                                  

consensus_5063#0      GGTACAAAATACGCTCAAGTATTATGCTTAACTTCGGCACCGTGTCGGACTACCTCGGGT 651
consensus_5063#1      ------------------------------------------------------------
                                                                                  

consensus_5063#0      ATAATGCCATGATCGATTTCTTTCCCCGCATGAGG 686
consensus_5063#1      -----------------------------------