cluster # 5071

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Anopheles gambiae
cluster # 5071 cluster # 5071 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5071#0 length = 656 sequences # 1

consensus_5071#1 length = 635 sequences # 2
consensus_5071#2 length = 617 sequences # 1

consensusID : consensus_5071#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [NAGGTACTTACTTGATCCGACCTGGTCAGGNAACAATTNGAACGTGCAGTTCGTGCTGCGCGTCCCCCGTCTGCAACACCGATCGTACCTGGTCGGACTACGACAGATCCTGTCCCANCGGCAGAAGATACTGTTCTTCATCCAGATTACGCGCGTACCGTACCTGCCCAACATGGAGTGGAAGGACGCGGTCACGATGCTCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTGGGCGCTGAGCGGANAGCAGAAACTGATGCCNACCTGAAGACTTGANCNAGTGCTGAGTCAAGNAGACNGCAATTATGNCGCCCGCTATATATCCNGAAAGTTGCTACCGNTGACATTGCTTGCCTGGATATGAAGTTGCATCAGCTCCTATTCCCTGGNGGCCTGTGACACGAATACTAGACTTGGCGTNAACCGGCTTAAACATGCCTAGCACCAGAAACGAAAGCCCGGCCCCGATGAACCAGAGGCCCAAGAATTGNCNANGGACATTGGACAACGAACACGACTTACCGGAGAAGAGGTTTGGTTGGAATTGGGCAAAAGCCCAAGGTGAAAGGGCACGTGGTACCCAGCGAGGTCGGTTATGGCCCGGAGAGAGCAGGGNAACACNCAGAGGTTGGGGAACGACCGC]

[+] EMBL AL695527             [NAGGTACTTACTTGATCCGACCTGGTCAGGNAACAATTNGAACGTGCAGTTCGTGCTGCGCGTCCCCCGTCTGCAACACCGATCGTACCTGGTCGGACTACGACAGATCCTGTCCCANCGGCAGAAGATACTGTTCTTCATCCAGATTACGCGCGTACCGTACCTGCCCAACATGGAGTGGAAGGACGCGGTCACGATGCTCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTGGGCGCTGAGCGGANAGCAGAAACTGATGCCNACCTGAAGACTTGANCNAGTGCTGAGTCAAGNAGACNGCAATTATGNCGCCCGCTATATATCCNGAAAGTTGCTACCGNTGACATTGCTTGCCTGGATATGAAGTTGCATCAGCTCCTATTCCCTGGNGGCCTGTGACACGAATACTAGACTTGGCGTNAACCGGCTTAAACATGCCTAGCACCAGAAACGAAAGCCCGGCCCCGATGAACCAGAGGCCCAAGAATTGNCNANGGACATTGGACAACGAACACGACTTACCGGAGAAGAGGTTTGGTTGGAATTGGGCAAAAGCCCAAGGTGAAAGGGCACGTGGTACCCAGCGAGGTCGGTTATGGCCCGGAGAGAGCAGGGNAACACNCAGAGGTTGGGGAACGACCGC]




>consensus_5071#0
NAGGTACTTACTTGATCCGACCTGGTCAGGNAACAATTNGAACGTGCAGTTCGTGCTGCG
CGTCCCCCGTCTGCAACACCGATCGTACCTGGTCGGACTACGACAGATCCTGTCCCANCG
GCAGAAGATACTGTTCTTCATCCAGATTACGCGCGTACCGTACCTGCCCAACATGGAGTG
GAAGGACGCGGTCACGATGCTCCTGCCGATGGTGTACGACATGAACATGAACCACACGAC
GCTGGGCGCTGAGCGGANAGCAGAAACTGATGCCNACCTGAAGACTTGANCNAGTGCTGA
GTCAAGNAGACNGCAATTATGNCGCCCGCTATATATCCNGAAAGTTGCTACCGNTGACAT
TGCTTGCCTGGATATGAAGTTGCATCAGCTCCTATTCCCTGGNGGCCTGTGACACGAATA
CTAGACTTGGCGTNAACCGGCTTAAACATGCCTAGCACCAGAAACGAAAGCCCGGCCCCG
ATGAACCAGAGGCCCAAGAATTGNCNANGGACATTGGACAACGAACACGACTTACCGGAG
AAGAGGTTTGGTTGGAATTGGGCAAAAGCCCAAGGTGAAAGGGCACGTGGTACCCAGCGA
GGTCGGTTATGGCCCGGAGAGAGCAGGGNAACACNCAGAGGTTGGGGAACGACCGC

consensusID : consensus_5071#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 635
fasta sequence

                              [CCGGTGCTGAAGGACTTCATCCAAATCATGCGCCTCGATCTGATGCCCGAGCTGGTGCAGGGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTCCCCCCGTCTGCAACACCGATCGTACCGGTCGGCACTACGACGATCCTGTCCCACCGGCAGAAGATACTGTTCTTCATCCAGATTACGCGCGTCCCGTACCTGCCCAACATGGAGTGGAAGGACGCGGTCACGATGCTCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTGGCCGAGCGGCGCGAACCGATGCCACCGCAGCTGACCAGTGCGGTCAGCGCGCATTTGCGCCGCTTTTCCGAGTGCTCCGTGCTGCTGCCGGACGAGTGCTCGCTCTTTCCGGCCGTGCACGATCTGCTGCTAACGCTAACGCTGCCGAACGAACCGCCCGCACCGGGCCAGATGCAGATGCAGCAGCTCGGCGGTGTGATGCAACCGGGAGGAGGTCCGGGTGTGCCAGGCGGTCCCGGTGGACCGATGGGAGGACAGATCGGTGGTCCCACGCCGCAGGTAGTGCCGCAGGTTGGCTCCAGCCCTAGCCCCATGATGCACTCGCCGATGCAACAGATGGGGCGGCGGTGGGCCACAGC]

[+] EMBL BM615459             [CCGGTGCTGAAGGACTTCATCCAAATCATGCGCCTCGATCTGATGCCCGAGCTGGTGCAGGGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTCCCCCCGTCTGCAACACCGATCGTACCGGTCGGCACTACGACGATCCTGTCCCACCGGCAGAAGATACTGTTCTTCATCCAGATTACGCGCGTCCCGTACCTGCCCAACATGGAGTGGAAGGACGCGGTCACGATGCTCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTGGCCGAGCGGCGCGAACCGATGCCACCGCAGCTGACCAGTGCGGTCAGCGCGCATTTGCGCCGCTTTTCCGAGTGCTCCGTGCTGCTGCCGGACGAGTGCTCGCTCTTTCCGGCCGTGCACGATCTGCTGCTAACGCTAACGCTGCCGAACGAACCGCCCGCACCGGGCCAGATGCAGATGCAGCAGCTCGGCGGTGTGATGCAACCGGGAGGAGGTCCGGGTGTGCCAGGCGGTCCC                                                                                                                          ]
[+] EMBL BX620891             [                                       CTGATGCCCGAGCTGGTGCAGGGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTCCCCCCGTCTGCAACACCGATCGTACCGGTCGGCACTACGACGATCCTGTCCCACCGGCAGAAGATACTGTTCTTCATCCAGATTACGCGCGTCCCGTACCTGCCCAACATGGAGTGGAAGGACGCGGTCACGATGCTCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTGGCCGAGCGGCGCGAACCGATGCCACCGCAGCTGACCAGTGCGGTCAGCGCGCATTTGCGCCGCTTTTCCGAGTGCTCCGTGCTGCTGCCGGATGAGTGCTCGCTCTTTCCGGCCGTGCACGATCTGCTGCTAACGCTAACGCTGCCGAACGAACCGCCCGCACCGGGCCAGATGCAGATGCAGCAGCTCGGTGGTGTGATGCAACCAGGAGGAGGTCCGGGTGTGCCGGGCGGTCCCGGTGGACCGATGGGAGGACAGATCGGTGGTCCCACGCCGCAGGTAGTGCCGCAGGTTGGCTCCAGCCCTAGCCCCATGATGCACTCGCCGATGCAACAGATGGGGCGGCGGTGGGCCACAGC]




>consensus_5071#1
CCGGTGCTGAAGGACTTCATCCAAATCATGCGCCTCGATCTGATGCCCGAGCTGGTGCAG
GGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTCCCCCCGTCTGCAACACCGATCGTA
CCGGTCGGCACTACGACGATCCTGTCCCACCGGCAGAAGATACTGTTCTTCATCCAGATT
ACGCGCGTCCCGTACCTGCCCAACATGGAGTGGAAGGACGCGGTCACGATGCTCCTGCCG
ATGGTGTACGACATGAACATGAACCACACGACGCTGGCCGAGCGGCGCGAACCGATGCCA
CCGCAGCTGACCAGTGCGGTCAGCGCGCATTTGCGCCGCTTTTCCGAGTGCTCCGTGCTG
CTGCCGGACGAGTGCTCGCTCTTTCCGGCCGTGCACGATCTGCTGCTAACGCTAACGCTG
CCGAACGAACCGCCCGCACCGGGCCAGATGCAGATGCAGCAGCTCGGCGGTGTGATGCAA
CCGGGAGGAGGTCCGGGTGTGCCAGGCGGTCCCGGTGGACCGATGGGAGGACAGATCGGT
GGTCCCACGCCGCAGGTAGTGCCGCAGGTTGGCTCCAGCCCTAGCCCCATGATGCACTCG
CCGATGCAACAGATGGGGCGGCGGTGGGCCACAGC

consensusID : consensus_5071#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 617
fasta sequence

                              [CCGAGGTTAGCTGCAGCGTATATTCACCAGGAAGAAAGCTAATGGCAATTACCTCGAACGAGCCGGGCGTGGTCGTATTCAAAGCGGACTGTCTGCAGTACCAAGTCTTCCTCAACCCGAACCACATAGCAATCGCTCCACCTGAAGGTGGACCAGCTGCCGATGGGGCCGATGATGGACGGCAAACCGCGTACCAGTGGGCCGCCAGGACCTGCAGATACTGGAGCAGTTCTTCGACACCGGGTAGCCGCCCGCCTATCGGCCGCCGTCATGACGAGCTTCACGCGCATGCGTCAACTGCCGGCCAGGTGCTGAAGGACTTCATCCAAATCATGCGCCTCGATCTGATGCCCGAGCTGGTGCAGGGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTNCCCCCGTCTGNCNNAGCGACCGATCGTACCGGTCGGCACTACGACGATCCTGTCCCACCGGCAGAAGATACTGTTCTTCATCCAGATTACGGCGCGTCCGTACTCTGCNCCAACANTGGCACGTGGAAGGACGCGGTCACGATGCGTCCTGGCGATGGTGTACGANGTGNNCATTGAACCACNCGTACGCTGGCCGCAGCGGCGCGAACCGATGCC]

[+] EMBL AL692118             [CCGAGGTTAGCTGCAGCGTATATTCACCAGGAAGAAAGCTAATGGCAATTACCTCGAACGAGCCGGGCGTGGTCGTATTCAAAGCGGACTGTCTGCAGTACCAAGTCTTCCTCAACCCGAACCACATAGCAATCGCTCCACCTGAAGGTGGACCAGCTGCCGATGGGGCCGATGATGGACGGCAAACCGCGTACCAGTGGGCCGCCAGGACCTGCAGATACTGGAGCAGTTCTTCGACACCGGGTAGCCGCCCGCCTATCGGCCGCCGTCATGACGAGCTTCACGCGCATGCGTCAACTGCCGGCCAGGTGCTGAAGGACTTCATCCAAATCATGCGCCTCGATCTGATGCCCGAGCTGGTGCAGGGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTNCCCCCGTCTGNCNNAGCGACCGATCGTACCGGTCGGCACTACGACGATCCTGTCCCACCGGCAGAAGATACTGTTCTTCATCCAGATTACGGCGCGTCCGTACTCTGCNCCAACANTGGCACGTGGAAGGACGCGGTCACGATGCGTCCTGGCGATGGTGTACGANGTGNNCATTGAACCACNCGTACGCTGGCCGCAGCGGCGCGAACCGATGCC]




>consensus_5071#2
CCGAGGTTAGCTGCAGCGTATATTCACCAGGAAGAAAGCTAATGGCAATTACCTCGAACG
AGCCGGGCGTGGTCGTATTCAAAGCGGACTGTCTGCAGTACCAAGTCTTCCTCAACCCGA
ACCACATAGCAATCGCTCCACCTGAAGGTGGACCAGCTGCCGATGGGGCCGATGATGGAC
GGCAAACCGCGTACCAGTGGGCCGCCAGGACCTGCAGATACTGGAGCAGTTCTTCGACAC
CGGGTAGCCGCCCGCCTATCGGCCGCCGTCATGACGAGCTTCACGCGCATGCGTCAACTG
CCGGCCAGGTGCTGAAGGACTTCATCCAAATCATGCGCCTCGATCTGATGCCCGAGCTGG
TGCAGGGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTNCCCCCGTCTGNCNNAGCGA
CCGATCGTACCGGTCGGCACTACGACGATCCTGTCCCACCGGCAGAAGATACTGTTCTTC
ATCCAGATTACGGCGCGTCCGTACTCTGCNCCAACANTGGCACGTGGAAGGACGCGGTCA
CGATGCGTCCTGGCGATGGTGTACGANGTGNNCATTGAACCACNCGTACGCTGGCCGCAG
CGGCGCGAACCGATGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5071#1      CCGGTGCTGAAGGACTTCATCCAAATCATGCGCCTCGATCTGATGCCCGAGCTGGTGCAG 60
consensus_5071#2      CCGAGGTTAG----CTGCAGCGTA--TATTCACCAGGAAGAAAGCTAATGGCAATTACCT 54
consensus_5071#0      ----------------------NAGGTACTTACTT-GATCCGACCTG---------GTCA 28
                                             *   *    *   **    *                 

consensus_5071#1      GGCAACAAGTGGAACGTGCAGTTCGTGCTGCGCGTCCCCCCGTCTGCAACACCGATCGTA 120
consensus_5071#2      CG-AACGAGCCGGGCGTGG---TCGTATT-CAAAGCGGACTGTCTGCAGTACCAAGTCTT 109
consensus_5071#0      GGNAACAATTNGAACGTGCAGTTCGTGCTGCGCGTCCC-CCGTCTGCAACACCGATCGTA 87
                       * *** *   *  ****    ****  * *    *   * *******  *** *   * 

consensus_5071#1      C--CGGTCGGCACTACGA-CGATCCTGTCCCACCGGCAGAAGATACTGTTCTTCATCCAG 177
consensus_5071#2      CCTCAACCCGAACCACAT-AGCAATCGCTCCACCTGAAGGTGGACCAGCTGCCGATGGGG 168
consensus_5071#0      C--CTGGTCGGACTACGACAGATCCTGTCCCANCGGCAGAAGATACTGTTCTTCATCCAG 145
                      *  *     * ** **    *     *  *** * * **  *   * * *    **   *

consensus_5071#1      ATTACGCGCGTCCCGTACCTGCCCAACA-TGGAGTGGAAGGAC--GCGGTCAC--GATGC 232
consensus_5071#2      CCGATGATGGACGGCAAACCGCGTACCAGTGGGCCGCCAGGACCTGCAGATACTGGAGCA 228
consensus_5071#0      ATTACGCGCGTACCGTACCTGCCCAACA-TGGAGTGGAAGGAC--GCGGTCAC--GATGC 200
                         * *   *      * * **  * ** ***   *  *****  ** *  **  **   

consensus_5071#1      TCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTG-GC------CGAGCGG 285
consensus_5071#2      GTTCTTCGACACCGGGTAGC-CGCCCGCCTATCGGCCGCCGTCATGA------CGAGCTT 281
consensus_5071#0      TCCTGCCGATGGTGTACGACATGAACATGAACCACACGACGCTGGGCGCTGAGCGGANAG 260
                            ***    *     *  *  *    * *   ** **    *       **     

consensus_5071#1      CGCGAACCGATGCCA--CCGCAG--CTGACCAG-TGCGGTCA-GCGCGCATTTGCGCC-- 337
consensus_5071#2      CACGCGC--ATGCGT--CAACTG--CCGGCCAGGTGCTGAAG-GACTTCATCCAAATCAT 334
consensus_5071#0      CAGAAACTGATGCCNACCTGAAGACTTGANCNAGTGCTGAGTCAAGNAGACNGCAATTAT 320
                      *     *  ****    *    *    *  *   *** *          *          

consensus_5071#1      GCTTTTCCGAGTGCT--CCGT--GCTGCTGCCGGACGAGTGCTCGCTCTTTCCGGCCGTG 393
consensus_5071#2      GCGCCTCGATCTGATGCCCGA--GCTGGTGCAGGGCAACAAGTGGAACGTGCAGTTCGTG 392
consensus_5071#0      GNCGCCCGCTATATATCCNGAAAGTTGCTACCGN-TGACATTGCTTGCCTGGATATGAAG 379
                      *     *    *     * *   * ** * * *    *         * *         *

consensus_5071#1      CACGATCTGCTGCTAAC-GCTAACG--CTGCCGAACG--AACCG-CCCGCACCGGGCCAG 447
consensus_5071#2      CTGCGCGTNCCCCCGTCTGNCNNAG--CGACCGATCG--TACCGGTCGGCACTACGAC-G 447
consensus_5071#0      TTGCATCAGCTCCTATTCCCTGGNGGCCTGTGACACGAATACTAGACTTGGCGTNAACCG 439
                               *  *           *  *       **   **    *    *     * *

consensus_5071#1      ATGCAGATGCAGC-AGCT--CGGCGGTGTGATGCAACCGGGAGGAGGTCCGGGTGTGCCA 504
consensus_5071#2      ATCCTGTCCCACC-GGCAGAAGATACTGTTCTTCATCCAGATTACGGCGCGTCCGTACTC 506
consensus_5071#0      GCTTAAACATGCCTAGCACCAGAAACGAAAGCCCGGCCCCGATGAACCAGAGGCCCAAGA 499
                                  *  **    *           *  **                      

consensus_5071#1      GGCGGTCCCGGTGGACCGATGG-GAGGACAGATCGGTGGTCCCACGCCGCAGGTAGTGCC 563
consensus_5071#2      TGCNCCAACANTGGCACG-TGG-AAGGACG---CGGTCACGATGCGTC-CTGGCGATGGT 560
consensus_5071#0      ATTGNCNANGGACATTGGACAACGAACACGACTTACCGGAGAAGAGGTTTGGTTGGAATT 559
                                       *      *  **                *     *        

consensus_5071#1      GCAGGTTGGCTCCAGCCCTAGCCCCATGATGCACTCGCCGATGCAACAGATGGGGCGGCG 623
consensus_5071#2      GTACGANGTGNNCA--TTGAACCACNCG-TACGCTGGCCGCAGCGGCG--CGAACCGATG 615
consensus_5071#0      GGGCAAAAGCCCAAGGTGAAAGGGCACGTGGTACCCAGCGAGGTCGGTTATGGCCCGGAG 619
                      *            *     *    *  *     *    **  *        *   **  *

consensus_5071#1      GTGGGCCACAGC------------------------- 635
consensus_5071#2      CC----------------------------------- 617
consensus_5071#0      AGAGCAGGGNAACACNCAGAGGTTGGGGAACGACCGC 656