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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5080#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1006 fasta sequence
[CCGGCAACAACGAGATCATGCATAAAACGGGCTTGAGAGAACTGGAAATATTGAAGAAACTGAACGACGCTGATCCCAGCGATCGGTACCACTGTCTTCGCTTGTACAGACACTTTTTCCATAAGCAACATCTGTGCATGGTTCTTGAGCCATTGTCAATGAACCTGCGCGAGGTATTGAAAAAGTATGGCAAAAATGTAGGCCTGCACATTAAAGCAGTGCGCAGCTATACTCAACAGTTACTTCTTGCTCTGAAATTGTTAAAAAAGACGGGAATTCTTCATGCCGACATTAAACCGGATAACATTTTGGTGAACGAAAACAACTTGGTGCTTAAGCTGTGCGATTTTGGATCGGCATCTTCGATCACAGATAACGAAATTACACCGTACTTGGTATCCCGTTTCTACCGTGCACCAGAAATTATTCTTGGCCTAACGTATGATTATGGTATCGACATGTGGTCGGCCGGCTGTTCGATTTATGAGCTGTACACGGGCAAGATACTGTTTAGTGGCCAGTCCAATAATCAAATGCTTAAATGTTTCATGGATCTGAAAGGCAAAATTCCAAACAAGCTGATTCGCAAAGGACAATTCAAGGATCAACATTTCGACCAGAATTGCAACTTTCTATCTCACGAGATAGATAAAATCACCGAAAGGGAAAAAGTCGTGGTAGTGTCAATGATCAAACCAACGAGGGATCTGCAACAGGAATTGATCGCTGGTCAAAATCTTCCCGACGACCAGATACGGAAAGTGTCCCAGCTGAAAGACTTATTAGACAAAGTGTTTGCACTTGATCCTGCTAAAAGAATTTCATTGAATCATGCATTGGCTCATCCGTTCATTCAGGACAAGATCTGAATACTGCACTCACCTTGCCGCGGAATTATCTGTATGCAACGGAAGTTTTACCCTTCCAAGAAGCCCAACCCCATCATGCAATCATCATTCATTCGTANGAGTTGAAGTGTGTGATTGNTATACTGAAGCCCATGATG]
[+] EMBL BM586609 [CCGGCAACAACGAGATCATGCATAAAACGGGCTTGAGAGAACTGGAAATATTGAAGAAACTGAACGACGCTGATCCCAGCGATCGGTACCACTGTCTTCGCTTGTACAGACACTTTTTCCATAAGCAACATCTGTGCATGGTTCTTGAGCCATTGTCAATGAACCTGCGCGAGGTATTGAAAAAGTATGGCAAAAATGTAGGCCTGCACATTAAAGCAGTGCGCAGCTATACTCAACAGTTACTTCTTGCTCTGAAATTGTTAAAAAAGACGGGAATTCTTCATGCCGACATTAAACCGGATAACATTTTGGTGAACGAAAACAACTTGGTGCTTAAGCTGTGCGATTTTGGATCGGCATCTTCGATCACAGATAACGAAATTACACCGTACTTGGTATCCCGTTTCTACCGTGCACCAGAAATTATTCTTGGCCTAACGTATGATTATGGTATCGACATGTGGTCGGCCGGCTGTTCGATTTATGAGCTGTACACGGGCAAGATACTGTTTAGTGGCCAGTCCAATAAT ]
[+] EMBL BX620566 [ TTTTGGTGAACGAAAACAACTTGGTGCTTAAGCTGTGTGATTTTGGATCGGCATCTTCGATCACAGATAACGAAATTACACCGTACTTGGTATCCCGTTTCTACCGTGCACCAGAAATTATTCTTGGCCTAACGTATGATTATGGTATCGACATGTGGTCGGCCGGCTGTTCGATCTATGAGCTGTACACGGGCAAGATACTGTTTAGTGGCCAGTCCAATAATCAAATGCTTAAATGTTTCATGGATCTGAAAGGCAAAATTCCAAACAAGCTGATTCGCAAAGGACAATTCAAGGATCAACATTTCGACCAGAATTGCAACTTTCTATCTCACGAGATAGATAAAATCACCGAAAGGGAAAAAGTCGTGGTAGTGTCAATGATCAAACCAACGAGGGATCTGCAACAGGAATTGATCGCTGGTCAAAATCTTCCCGACGACCAGATACGGAAAGTGTCCCAGCTGAAAGACTTATTAGACAAAGTGTTTGCACTTGATCCTGCTAAAAGAATTTCATTGAATCATGCATTGGCTCATCCGTTCATTCAGGACAAGATCTGAATACTGCACTCACCTTGCCGCGGAATTATCTGTATGCAACGGAAGTTTTACCCTTCCAAGAAGCCCAACCCCATCATGCAATCATCATTCATTCGTANGAGTTGAAGTGTGTGATTGNTATACTGAAGCCCATGATG]
consensusID : consensus_5080#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 942 fasta sequence
[GCAGATCCCCCGCGGTTAAATAGATAAAATCACGAAAGGGAAAAATCGTGGTAGTGTCAATGATCAAACCAACGAGGGATCTAGCAACAGGAATTGATCGCTGGTCAAAATCTTACCCGACGACCAGATACGGAAAGTGTCCCAGCTGAAAGACTTATTAGACAAAGTAGTTTGCACTATGATCCTGCTAAAAGAATTTCATTGAATCATGCATATGGCCCATCCGTTCATATCAGGACAAGATCTGAATACTGCGCTCACCTTGCCGCGGANTTATCTGTATGCAACGGAAGTTTTACCCTTCCAAGTAATGGTTCAACGCCGAATCAACGTCAGCTATAACACATATTAAACGATCCTTTTCTTACTTACACTTCACTGATAACATATTCTACCATCCGCGNACTCGCCCGATTGTNCTTCGATCGATGNAAGGGAAGGCCAACCCCATCAATGCAATCAATCCACTNTCACTTTCCGGTANGCGCAGCTTGGAACAGTGTGGTGACTTCGGTTCAATTNCCTGGAAAGCCCCATAAAATGGAGAAAATCTGGTAGCTAACCATTTCTCCTCNCTAGGATAGTAACACGGAAAANAACACACNCTTACACAGAGGGGTACACCCANAATGACGTTGCCACCTCCACTAATTNGCANATTCTTCTNTAACNTTCCCAACNCCCACNCTTTACTTTTATAAATTNGCGAAGCGGGCAAGGGTTTAAGCTACAACACNAGAATACCAACNAANTAAACACCACTNANGGTNAAAACAANCGTAANTGGACCCATAAAACNACNGGCACGGNATCCAAGCGGNTTCAACAAGAACGGGACAACNCAAAACNACACNCGCTATCCCGTTGGTGTAGTACTNAGACTTACANAATTANATTCGGACCATNGGATNGCTACCTAAGGGCCCTAGTCACACACCTATG]
[+] EMBL AL692273 [GCAGATCCCCCGCGGTTAAATAGATAAAATCACGAAAGGGAAAAATCGTGGTAGTGTCAATGATCAAACCAACGAGGGATCTAGCAACAGGAATTGATCGCTGGTCAAAATCTTACCCGACGACCAGATACGGAAAGTGTCCCAGCTGAAAGACTTATTAGACAAAGTAGTTTGCACTATGATCCTGCTAAAAGAATTTCATTGAATCATGCATATGGCCCATCCGTTCATATCAGGACAAGATCTGAATACTGCGCTCACCTTGCCGCGGANTTATCTGTATGCAACGGAAGTTTTACCCTTCCAAGTAATGGTTCAACGCCGAATCAACGTCAGCTATAACACATATTAAACGATCCTTTTCTTACTTACACTTCACTGATAACATATTCTACCATCCGCGNACTCGCCCGATTGTNCTTCGATCGATGNAAGGGAAGGCCAACCCCATCAATGCAATCAATCCACTNTCACTTTCCGGTANGCGCAGCTTGGAACAGTGTGGTGACTTCGGTTCAATTNCCTGGAAAGCCCCATAAAATGGAGAAAATCTGGTAGCTAACCATTTCTCCTCNCTAGGATAGTAACACGGAAAANAACACACNCTTACACAGAGGGGTACACCCANAATGACGTTGCCACCTCCACTAATTNGCANATTCTTCTNTAACNTTCCCAACNCCCACNCTTTACTTTTATAAATTNGCGAAGCGGGCAAGGGTTTAAGCTACAACACNAGAATACCAACNAANTAAACACCACTNANGGTNAAAACAANCGTAANTGGACCCATAAAACNACNGGCACGGNATCCAAGCGGNTTCAACAAGAACGGGACAACNCAAAACNACACNCGCTATCCCGTTGGTGTAGTACTNAGACTTACANAATTANATTCGGACCATNGGATNGCTACCTAAGGGCCCTAGTCACACACCTATG]
consensusID : consensus_5080#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence
[ATCGCCCGAGGTTTNTCATGGATCTGAAAGGCNCAATCCAACAAGCTGATTCGCAAAGGACAATTCAAGGATCAACATTTCGACCAGAATTGCAACTTTCTATCTCACGAGATAGATAAAATCACCGAAAGGGAAAAAGTCGTGGTAGTGTCAATGATCAAACCAACGAGGGATCTGCAACAGGAATTGATCGCTGGTCAAAATCTTCCCGACGACCAGATACGGAAAGTGTCCCAGCTGAAAGCACTTATTAGACAAAGTGTTTGCACTTGATCCTGCTAAAAGAATTTCATTGAATCATGCACTTGGCTCATCCGTTCATTCAGGACAAGATCTGAATACTGCACTCACCTTGCCGCGGAATTATCTGTATGCAACGGAAGTTTACCCTTCCAAGAAGCCCAACCCCATCATGCAATCATCATTCANTTCGGTAGGAGTTGAACGTGTGNTGATNGTCATACTGAAGCCCATAAGNTGAGAAACTTGTAGCTACATTGTTGCTCTTGGTTTNTCACGAAGAACNAAATA]
[+] EMBL AL933683 [ATCGCCCGAGGTTTNTCATGGATCTGAAAGGCNCAATCCAACAAGCTGATTCGCAAAGGACAATTCAAGGATCAACATTTCGACCAGAATTGCAACTTTCTATCTCACGAGATAGATAAAATCACCGAAAGGGAAAAAGTCGTGGTAGTGTCAATGATCAAACCAACGAGGGATCTGCAACAGGAATTGATCGCTGGTCAAAATCTTCCCGACGACCAGATACGGAAAGTGTCCCAGCTGAAAGCACTTATTAGACAAAGTGTTTGCACTTGATCCTGCTAAAAGAATTTCATTGAATCATGCACTTGGCTCATCCGTTCATTCAGGACAAGATCTGAATACTGCACTCACCTTGCCGCGGAATTATCTGTATGCAACGGAAGTTTACCCTTCCAAGAAGCCCAACCCCATCATGCAATCATCATTCANTTCGGTAGGAGTTGAACGTGTGNTGATNGTCATACTGAAGCCCATAAGNTGAGAAACTTGTAGCTACATTGTTGCTCTTGGTTTNTCACGAAGAACNAAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5080#0 CCGGCAACAACGAGATCATGCATAAAACGGGCTTGAGAGAACTGGAAATATTGAAGAAAC 60
consensus_5080#2 ------------------------------------------------------------
consensus_5080#1 -----------------GCAGATCCCCCGCGGTTAAATAGAT--AAAATCACGAAAGGGA 41
consensus_5080#0 TGAACGACGCTGATCCCAGCGATCGGTACCACTGTCTTCGCTTGTACAGACACTTTTTCC 120
consensus_5080#2 ------------------------------------------------------------
consensus_5080#1 AAAATCGTGGTAGTGTCAATGATCAA-ACCAACGAGGGATCTAGCAACAGGAATTGATCG 100
consensus_5080#0 ATAAGCAACATCT-GTGCATGGTTCTTGAGCCATTGTCAATGAACCTGCGCGAGGTATTG 179
consensus_5080#2 ------------------------------------------------------------
consensus_5080#1 CTGGTCAAAATCTTACCCGACGACCAGATACGGAAAGTGTCCCAGCTGAAAGACTTATTA 160
consensus_5080#0 AAAAAGTATGGCAAAAATGTAGGCCTGCACATTAAAGCAGTGCGCAGCTATACTCAACAG 239
consensus_5080#2 ------------------------------------------------------------
consensus_5080#1 GACAAAGTAGTTTGCACTATGATCCTGC---TAAAAGAATTTCAT---TGAATCATGCAT 214
consensus_5080#0 TTACTTCTTGCTCTGAAATTGTTAAAAAAGACGGGAATTCTTCATGCCGACATTAAACCG 299
consensus_5080#2 ------------------------------------------------------------
consensus_5080#1 ATGGCCCATCCGTTCATATCA--GGACAAGATCTGAATACTGC--GCTCACCTTGCCGCG 270
consensus_5080#0 GATAACATTTTGGTGAACGAAAACAACTTGGTGCTTA--AGCTGTGCGATTTTGGATCGG 357
consensus_5080#2 ------------------------------------------------------------
consensus_5080#1 GANTTATCTGTATGCAACGGAAGTTTTACCCTTCCAAGTAATGGTTCAACGCCGAATCAA 330
consensus_5080#0 CATCTTCGATCACAGATAACGAAATTACACCGTACTTGGTATCCCGTTTCTACCGTGCAC 417
consensus_5080#2 ------------------------------------------------------------
consensus_5080#1 CGTCAGCTATAACACATA------TTAAACGATCCTT-----TTCTTACTTACACTTCAC 379
consensus_5080#0 CAGAAATTATTCTTGGCCTAACGTATGATTATGGTATCGACATGTGGTCGGCCGGCTGTT 477
consensus_5080#2 ------------------------------------------------------------
consensus_5080#1 TGATAAC-ATATTCTACCATCCGCGNACTCGCCCGATTGTNCTTCGATCGATGNAAGGGA 438
consensus_5080#0 CGATTTATGAGCTGTACACGGGCAAGATACTGTTTAGTGGCCAGTCCAATAATCAAATGC 537
consensus_5080#2 -------------------------------------------------------ATCGC 5
consensus_5080#1 AGGCCAACCCCATCAATGCAATCAATCCACTNTCACTT------TCCGGTANGCGCAGCT 492
consensus_5080#0 TTAAA-TGTTTCATGGATCTGAAAGGCAAAATTCCAAACAAGCTGATTCGCAAAGGACAA 596
consensus_5080#2 CCGAGGTTTNTCATGGATCTGAAAGGCNCAATCC--AACAAGCTGATTCGCAAAGGACAA 63
consensus_5080#1 TGGAACAGTGTGGTGACTTCGGTT--CAATTNCCTGGAAAGCCCCATAAAATGGAGAAAA 550
* * * ** * * * * * * * ** ** **
consensus_5080#0 TTCAAGGATCAACATTTCGACCAGAATTGCAACTTTCTATCTCACGAGATAG-ATAAAAT 655
consensus_5080#2 TTCAAGGATCAACATTTCGACCAGAATTGCAACTTTCTATCTCACGAGATAG-ATAAAAT 122
consensus_5080#1 TCTGGTAGCTAACCATTTCTCCTCNCTAGGA---TAGTAACACGGAAAANAACACACNCT 607
* *** ** ** * * * * ** * * * * * * * *
consensus_5080#0 CACCGAAAGGGAAAAAGTCGTGGTAGTGTCAATGATCAAACCAACGAGGGATCTGCAACA 715
consensus_5080#2 CACCGAAAGGGAAAAAGTCGTGGTAGTGTCAATGATCAAACCAACGAGGGATCTGCAACA 182
consensus_5080#1 TACACAGAGGGGTACACCCANAATGACGTTGCCACCTCCACTAATTNGCANATTCTTCTN 667
** * **** * * * * ** ** ** * *
consensus_5080#0 GGAATTGATCGCTGGTCAAAATCTTCCCGACGACCAGATACGGAAAGTGTCCCAGCTGAA 775
consensus_5080#2 GGAATTGATCGCTGGTCAAAATCTTCCCGACGACCAGATACGGAAAGTGTCCCAGCTGAA 242
consensus_5080#1 TAACNT--TCCCAACNCCCACNCTTTACTTTTATAAATTNGCGAAGCGGGCAAGGGTTTA 725
* * ** * * * *** * * * * *** * * * * *
consensus_5080#0 AG-ACTTATTAGACAAAGTGTTTGCACTTGATCCTGCTAAAAGAATTTCATTGAATCATG 834
consensus_5080#2 AGCACTTATTAGACAAAGTGTTTGCACTTGATCCTGCTAAAAGAATTTCATTGAATCATG 302
consensus_5080#1 AGCTACAACACNAGAATACCAACNAANTAAACACCACTNANGG---TNAAAACAANCGTA 782
** * * ** * * * * ** * * * * ** * *
consensus_5080#0 CA-TTGGCTCATCCGTTCATTCAGGACAAGATCTGAATACTGCACTCACCTTGCCGCGGA 893
consensus_5080#2 CACTTGGCTCATCCGTTCATTCAGGACAAGATCTGAATACTGCACTCACCTTGCCGCGGA 362
consensus_5080#1 AN-TGGACCCATAAAACNACN-GGCACGGNATCCAAGC---GGNTTCAACAAGA-ACGGG 836
* * * *** * * ** *** * * *** * * ***
consensus_5080#0 ATTATCTGTATGCAACGGAAGTTTTACCCTTCCAAGAAGCCCAACCCCATCATGCAATCA 953
consensus_5080#2 ATTATCTGTATGCAACGGAAGTTT-ACCCTTCCAAGAAGCCCAACCCCATCATGCAATCA 421
consensus_5080#1 ACAACNCAAA-ACNACACNCGCTATCCCGTTGGTGTAGTACTNAGAC--TTACANAATTA 893
* * * * ** * * ** ** * * * * * * *** *
consensus_5080#0 TCATTCATTC--GTANGAGTTGAA-GTGTGT-GATTGNTATACTGAAGCCCATGATG--- 1006
consensus_5080#2 TCATTCANTTCGGTAGGAGTTGAACGTGTGNTGATNGTCATACTGAAGCCCATAAGNTGA 481
consensus_5080#1 N-ATTCGGAC---CATNGGATNGCTACCTAA-GGGCCCTAGTCACACACCTATG------ 942
**** * * * * * * * * ** **
consensus_5080#0 --------------------------------------------------
consensus_5080#2 GAAACTTGTAGCTACATTGTTGCTCTTGGTTTNTCACGAAGAACNAAATA 531
consensus_5080#1 --------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||