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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1101 fasta sequence
[CCCACGCGTCCGACGAACTAAGGATTCAACAGATGCGCATACACACTAGATTCAACACACTGCCATATAAGCGGAATGGGAGGAGAGAAAAAAAGCACGCCAAAGCGTTGTAAGGCGTGCCGATAGCCGATGAATGGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTTCTTATAGCGCCTAATGTTGCAAGTTGACTTTACCGGCATTGGAATGTGTATGGAGTTATACACGTCGGCTCTATATATGTATGTGTGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCTCCTAGATAAGCAAAAAGGCGAATTAATACACATAAACTTTGGCGGTTCTTTTTGAACAGAAAATAACAATAATATCTTTGATGTCGCCGGAAGGATTCCGGCAAATTGGTATGCCGCCAGGTTACGAGATGGAAAGTAAGCGCTCGCGTATATGCGTTGGTTTATGTTTTGTTGTACAATTAATTTGTTTGTAAAGCATACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCATATCCTACGATCGGCAAATACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGTACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGAAACATTGCCACCGAGAGATGAGTTTAAGAAATCATTACTAAACATTACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACAGCTGTGTTTGTGCACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAGACCCTAAAATGAGTCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTTTTAACCACCGGAGTCACAACATTTCAACTTACCATCAAATAGATTTCTCCCATCAAATTGATATCAGAAAGACAAACGGATAATACAGAACACGATTGCAATGCCATTTTCCTCCGACACAGCAACTTAGGCAAAAACCCAAAAAANAATTACTAACGGAAGGGTAAATTTTCTACAACTCGCCTTCTCTGGCATCTATCCCACATTAACCGNT]
[+] EMBL BM602981 [CCCACGCGTCCGACGAACTAAGGATTCAACAGATGCGCATACACACTAGATTCAACACACTGCCATATAAGCGGAATGGGAGGAGAGAAAAAAAGCACGCCAAAGCGTTGTAAGGCGTGCCGATAGCCGATGAATGGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTTCTTATAGCGCCTAATGTTGCAAGTTGACTTTACCGGCATTGGAATGTGTATGGAGTTATACACGTCGGCTCTATATATGTATGTGTGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCTCCTAGATAAGCAAAAAGGCGAATTAATACACATAAACTTTGGCGGTTCTTTTTGAACAGAAAATAACAATAATATCTTTGATGTCGCCGGAAGGATTCCGGCAAATTGGTATGCCGCCAGGTTACGAGATGGAAAGTAAGCGCTCGCGTATATGCGTTGGTTTATGTTTTGTTGTACAATTAATTTGTTTGTAAAGCATACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCATATCCTACGATCGGCAAATACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGTACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGAAACATTGC ]
[+] EMBL AL934701 [ ggcccgagGGCAA ACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGCAACATTGCCACCGAGAGATGAGTTTAAGAAATCATTACTAAACATTACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACAGCTGTGTTTGTGCACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAGACCCTAAAATGAGTCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTTTTAACCACCGGAGTCACAACATTTCAACTTACCATCAAATAGATTTCTCCCATCAAATTGATATCAGAAAGACAAACGGATAATACAGAACACGATTGCAATGCCATTTTCCTCCGACACAGCAACTTAGGCAAAAACCCAAAAAANAATTACTAACGGAAGGGTAAATTTTCTACAACTCGCCTTCTCTGGCATCTATCCCACATTAACCGNT]
consensusID : consensus_5101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[GATCGCCCGAGGTGAAAAAAGCACGCCAAAGCGTTGTAGGCGTGCCGATAGCCGATGAATGGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTTCTTATAGCGCCTAATGTTGCAAGTTACATTGGAATGTGTATGGAGTTATACACATCGGCTCTATATATGTATGTGTGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCTCCTAGATAAGCAAAAAGGCGAATTAATACACATAAACTTGGACTGTTCTTTTTGAACAGAAAATAACAATAATATCTTTGATGTCGTTGGAAGGATTCCTGCAAATTGGTATGCCGCCAGGTTACGAGTTGGAAAGCAGACGCTCGCGTATATGCGTGTTTATGTTTGTTGTACACTTAATTTGTTTGTAAAGCATACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCATATCCTACGATCGGCAAATACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGCAACATTGCCACCGAGAGATCGNAGTTTAAGAAATCATTACTAAACATTACTAAACAACCACATAGGGCACAAACTCAC]
[+] EMBL AL930184 [GATCGCCCGAGGTGAAAAAAGCACGCCAAAGCGTTGTAGGCGTGCCGATAGCCGATGAATGGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTTCTTATAGCGCCTAATGTTGCAAGTTACATTGGAATGTGTATGGAGTTATACACATCGGCTCTATATATGTATGTGTGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCTCCTAGATAAGCAAAAAGGCGAATTAATACACATAAACTTGGACTGTTCTTTTTGAACAGAAAATAACAATAATATCTTTGATGTCGTTGGAAGGATTCCTGCAAATTGGTATGCCGCCAGGTTACGAGTTGGAAAGCAGACGCTCGCGTATATGCGTGTTTATGTTTGTTGTACACTTAATTTGTTTGTAAAGCATACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCATATCCTACGATCGGCAAATACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGCAACATTGCCACCGAGAGATCGNAGTTTAAGAAATCATTACTAAACATTACTAAACAACCACATAGGGCACAAACTCAC]
consensusID : consensus_5101#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence
[AGAATCCCCCGAGGTNAATACAATAATATCTTTGATGTCGTTGGAAGGATTCCTGCAAATTGGTATGCCGCCAGGTTACGAGTTGGAAAGCAGACGCTCGCGTATATGCGTTGTTTATGTTTTGTTGTACACTTAATTTGTTTGTAAAGCTCACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCATATCCTACGATCGGCAAAACCTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGCAACATTGCCACCGAGAGATGAGTTTAAGAAATCATTACTAAACATTACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACAGCTGTGTTTGTGCACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAGACCCTAAAATGAGTCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTTTTAACCACCGGA]
[+] EMBL AL692744 [AGAATCCCCCGAGGTNAATACAATAATATCTTTGATGTCGTTGGAAGGATTCCTGCAAATTGGTATGCCGCCAGGTTACGAGTTGGAAAGCAGACGCTCGCGTATATGCGTTGTTTATGTTTTGTTGTACACTTAATTTGTTTGTAAAGCTCACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCATATCCTACGATCGGCAAAACCTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCGTCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACCATAAAATAACTAGCAACATTGCCACCGAGAGATGAGTTTAAGAAATCATTACTAAACATTACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACAGCTGTGTTTGTGCACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAGACCCTAAAATGAGTCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTTTTAACCACCGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5101#0 CCCACGCGTCCGACGAACTAAGGATTCAACAGATGCGCATACACACTAGATTCAACACAC 60
consensus_5101#1 ------------------------------------------------------------
consensus_5101#2 ------------------------------------------------------------
consensus_5101#0 TGCCATATAAGCGGAATGGGAGGAGAGAAAAAAAGCACGCCAAAGCGTTGTAAGGCGTGC 120
consensus_5101#1 --------------GATCGCCCGAGGTGAAAAAAGCACGCCAAAGCGTTGTA-GGCGTGC 45
consensus_5101#2 ------------------------------------------------------------
consensus_5101#0 CGATAGCCGATGAATGGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTT 180
consensus_5101#1 CGATAGCCGATGAATGGATGCGTAAAAAGTTGTACTTTAATAACGTAGCTAAAATTCGTT 105
consensus_5101#2 ------------------------------------------------------------
consensus_5101#0 CTTATAGCGCCTAATGTTGCAAGTTGACTTTACCGGCATTGGAATGTGTATGGAGTTATA 240
consensus_5101#1 CTTATAGCGCCTAATGTTGCAAGTTA----------CATTGGAATGTGTATGGAGTTATA 155
consensus_5101#2 ------------------------------------------------------------
consensus_5101#0 CACGTCGGCTCTATATATGTATGTGTGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCT 300
consensus_5101#1 CACATCGGCTCTATATATGTATGTGTGTGTATGTGTGCGTGTAATAGCGGTGCTTTTTCT 215
consensus_5101#2 ------------------------------------------------------------
consensus_5101#0 CCTAGATAAGCAAAAAGGCGAATTAATACACATAAACTTTGGCGGTTCTTTTTGAACAGA 360
consensus_5101#1 CCTAGATAAGCAAAAAGGCGAATTAATACACATAAACTTGGACTGTTCTTTTTGAACAGA 275
consensus_5101#2 -------------------------------------------AGAATCCCCCGAG--GT 15
* ** *
consensus_5101#0 AAATAACAATAATATCTTTGATGTCGCCGGAAGGATTCCGGCAAATTGGTATGCCGCCAG 420
consensus_5101#1 AAATAACAATAATATCTTTGATGTCGTTGGAAGGATTCCTGCAAATTGGTATGCCGCCAG 335
consensus_5101#2 NAATA-CAATAATATCTTTGATGTCGTTGGAAGGATTCCTGCAAATTGGTATGCCGCCAG 74
**** ******************** *********** ********************
consensus_5101#0 GTTACGAGATGGAAAGTAAGCGCTCGCGTATATGCGTTGGTTTATGTTTTGTTGTACAAT 480
consensus_5101#1 GTTACGAGTTGGAAAGCAGACGCTCGCGTATATGCGT--GTTTATGTTT-GTTGTACACT 392
consensus_5101#2 GTTACGAGTTGGAAAGCAGACGCTCGCGTATATGCGTT-GTTTATGTTTTGTTGTACACT 133
******** ******* * ***************** ********** ******** *
consensus_5101#0 TAATTTGTTTGTAAAGCATACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCA 540
consensus_5101#1 TAATTTGTTTGTAAAGCATACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCA 452
consensus_5101#2 TAATTTGTTTGTAAAGCTCACGTGCGTGGGAGGGATTGATTTGTACTAACGTCCTGTGCA 193
***************** *****************************************
consensus_5101#0 TATCCTACGATCGGCAAATACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCG 600
consensus_5101#1 TATCCTACGATCGGCAAATACTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCG 512
consensus_5101#2 TATCCTACGATCGGCAAAACCTACAGCACCACTGATCAGGCAGCTTCGTTCCGATTGCCG 253
****************** ****************************************
consensus_5101#0 TCCCGACGCTTAGTGCATCCGTGGTACACTGTGTGCTTTAGAACAAGTAATTATTTTACC 660
consensus_5101#1 TCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACC 572
consensus_5101#2 TCCCGACGCTTAGTGCATCCGTGGGACACTGTGTGCTTTAGAACAAGTAATTATTTTACC 313
************************ ***********************************
consensus_5101#0 ATAAAATAACTAGAAACATTGCCACCGAGAGAT--GAGTTTAAGAAATCATTACTAAACA 718
consensus_5101#1 ATAAAATAACTAGCAACATTGCCACCGAGAGATCGNAGTTTAAGAAATCATTACTAAACA 632
consensus_5101#2 ATAAAATAACTAGCAACATTGCCACCGAGAGAT--GAGTTTAAGAAATCATTACTAAACA 371
************* ******************* ************************
consensus_5101#0 TTACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACAGCTGTGTTTGT 778
consensus_5101#1 TTACTAAACAACCACATAGGGCACAAACTCAC---------------------------- 664
consensus_5101#2 TTACTAAACAACCACATAGGGCACAAACTCACACACACACATACACACAGCTGTGTTTGT 431
********************************
consensus_5101#0 GCACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAGACCCTAAAATG 838
consensus_5101#1 ------------------------------------------------------------
consensus_5101#2 GCACAGATAGAATGAACAGCAAAAAGCAAAACAAGTAAACTAGTCACAGACCCTAAAATG 491
consensus_5101#0 AGTCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTTTTAACCACCGG 898
consensus_5101#1 ------------------------------------------------------------
consensus_5101#2 AGTCCTTTTACTCATCGCAAGTGTACGCGTGTGTACGAATACTTTGTTTTTAACCACCGG 551
consensus_5101#0 AGTCACAACATTTCAACTTACCATCAAATAGATTTCTCCCATCAAATTGATATCAGAAAG 958
consensus_5101#1 ------------------------------------------------------------
consensus_5101#2 A----------------------------------------------------------- 552
consensus_5101#0 ACAAACGGATAATACAGAACACGATTGCAATGCCATTTTCCTCCGACACAGCAACTTAGG 1018
consensus_5101#1 ------------------------------------------------------------
consensus_5101#2 ------------------------------------------------------------
consensus_5101#0 CAAAAACCCAAAAAANAATTACTAACGGAAGGGTAAATTTTCTACAACTCGCCTTCTCTG 1078
consensus_5101#1 ------------------------------------------------------------
consensus_5101#2 ------------------------------------------------------------
consensus_5101#0 GCATCTATCCCACATTAACCGNT 1101
consensus_5101#1 -----------------------
consensus_5101#2 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||