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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1263 fasta sequence
[GCACAACCTTTGCGTAGTGTACGTGGAGCGAGGCAAACTGTTACAAGCGCAGGATTGCCTCTCCCACGCCCACGAGCTAGCACCGGGTGAGGAGTACATCGGCCGACATCTTCAGATCGTGCAAACGCGCATCAATCGTCTGCGACAGTCGCCGGACGGAAGTCGGGAGAAGGAAATTGCCTTCGCAGACTATGATCCGCAGGAGTTTGGTGGCCGTGCCGGCCGTACACTGTCATCCGATAGTGTCGACCTGTTGCCGTCGCTTGGCAATAGCATTGTAAATAGTAATAGCGAAGAACCGAATGGCCAAGAGGGCGATCTGTCGAAAGAAGATGCCGAGGTTCCGTTCGGTTACGATAATAAGAAGAAAACAGTATTACCTCACCAGCAGCTAGAGCCACAGGCTGCACCGCTTCCAGCGGACGATGATCCGGTGTTTCTCGAGTCGGATAACACAAACAGTCCACAAAGTTTTGCAGCAACGGTAGTAGACAGTATAGCACACGATTCGAAGCACCACCGTACCGACGGTAGCAGTAGTGGCAACCATGCTCCAACAGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGCCGATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCACATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTTGTTCTCGTTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAATTTGTTAGGAATGAATGTTGGAGACACAAAA]
[+] EMBL BX607843 [GCACAACCTTTGCGTAGTGTACGTGGAGCGAGGCAAACTGTTACAAGCGCAGGATTGCCTCTCCCACGCCCACGAGCTAGCACCGGGTGAGGAGTACATCGGCCGACATCTTCAGATCGTGCAAACGCGCATCAATCGTCTGCGACAGTCGCCGGACGGAAGTCGGGAGAAGGAAATTGCCTTCGCAGACTATGATCCGCAGGAGTTTGGTGGCCGTGCCGGCCGTACACTGTCATCCGATAGTGTCGACCTGTTGCCGTCGCTTGGCAATAGCATTGTAAATAGTAATAGCGAAGAACCGAATGGCCAAGAGGGCGATCTGTCGAAAGAAGATGCCGAGGTTCCGTTCGGTTACGATAATAAGAAGAAAACAGTATTACCTCACCAGCAGCTAGAGCCACAGGCTGCACCGCTTCCAGCGGACGATGATCCGGTGTTTCTCGAGTCGGATAACACAAACAGTCCACAAAGTTTTGCAGCAACGGTAGTAGACAGTATAGCACACGATTCGAAGCACCACCGTACCGACGGTAGCAGTAGTGGCAACCATGCTCCAACAGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGCCGATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCACATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAG ]
[+] EMBL BM611057 [ ccgGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCACATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAAGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTTGTTCTCGTTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAATTTGTTAGGAATGAATGTTGGAGACACAAAA]
consensusID : consensus_5116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[CCCCCGAGGTTATTCTTGACTACAAGCTTGATTGTTTCAAATCAACTAAGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGNGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTGTTCTCGTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTNACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAACTTTGTCTAGCGAATGAATGTCGGAGACACAAAANACGCGCACTACTCTCTCTACTATATACAACCATAAA]
[+] EMBL AL693141 [CCCCCGAGGTTATTCTTGACTACAAGCTTGATTGTTTCAAATCAACTAAGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGNGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTGTTCTCGTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTNACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAACTTTGTCTAGCGAATGAATGTCGGAGACACAAAANACGCGCACTACTCTCTCTACTATATACAACCATAAA]
consensusID : consensus_5116#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence
[GAATCGCCACGAGGTTTAGCACACGATTCGAAGCACACCGTACCGACGGTAGCAGTAGTGGCAACCATGCCCCAACCGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGCCGATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCATATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTCCCCGCAAGAACT]
[+] EMBL BX468951 [GAATCGCCACGAGGTTTAGCACACGATTCGAAGCACACCGTACCGACGGTAGCAGTAGTGGCAACCATGCCCCAACCGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGCCGATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCATATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTCCCCGCAAGAACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5116#0 GCACAACCTTTGCGTAGTGTACGTGGAGCGAGGCAAACTGTTACAAGCGCAGGATTGCCT 60
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 ------------------------------------------------------------
consensus_5116#0 CTCCCACGCCCACGAGCTAGCACCGGGTGAGGAGTACATCGGCCGACATCTTCAGATCGT 120
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 ------------------------------------------------------------
consensus_5116#0 GCAAACGCGCATCAATCGTCTGCGACAGTCGCCGGACGGAAGTCGGGAGAAGGAAATTGC 180
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 ------------------------------------------------------------
consensus_5116#0 CTTCGCAGACTATGATCCGCAGGAGTTTGGTGGCCGTGCCGGCCGTACACTGTCATCCGA 240
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 ------------------------------------------------------------
consensus_5116#0 TAGTGTCGACCTGTTGCCGTCGCTTGGCAATAGCATTGTAAATAGTAATAGCGAAGAACC 300
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 ----------------CCCCCGAGGTTATTCTTGACTACAAGCTTGATTGTTTCAAATCA 44
consensus_5116#0 GAATGGCCAAGAGGGCGATCTGTCGAAAGAAGATGCCGAGGTTCCGTTCGGTTACGATAA 360
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 ACTAAGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGA 104
consensus_5116#0 TAAGAAGAAAACAGTATTACCTCACCAGCAGCTAGAGCCACAGGCTGCACCGCTTCCAGC 420
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 CGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTA 164
consensus_5116#0 GGACGATGATCCGGTGTTTCTCGAGTCGGATAACACAAACAGTCCACAAAGTTTTGCAGC 480
consensus_5116#2 ----------------------------------------------------------GA 2
consensus_5116#1 TGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGA 224
*
consensus_5116#0 AACGGTA--GTAGACAGTATAGCACACGATTCGAAGCACCACCGTACC--GACGGTAGCA 536
consensus_5116#2 ATCGCCA--CGAG---GTTTAGCACACGATTCGAAGCAC-ACCGTACC--GACGGTAGCA 54
consensus_5116#1 ACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAG-ATCGTGCAAAGATGGAAGAT 283
* * ** * * ** *** * * * *** * ** ** **
consensus_5116#0 GTAGTGGCAACC---ATGCTCCAACAGCTGTCCATCGGGATGATGGTGT-GCCTTCGGTG 592
consensus_5116#2 GTAGTGGCAACC---ATGCCCCAACCGCTGTCCATCGGGATGATGGTGT-GCCTTCGGTG 110
consensus_5116#1 GAAGCTGTGCATTGAATGCACTGTTCGGGGCAC-TGTGGGTGAGAATGCCGCACGAGGCA 342
* ** * **** * * * * * ** *** ** ** **
consensus_5116#0 AAGCGTGCCGATGTC---AGCC--------ATCCTCCATCCGATGGTTCCC-TTCATCAT 640
consensus_5116#2 AAGCGTGCCGATGTC---AGCC--------ATCCTCCATCCGATGGTTCCC-TTCATCAT 158
consensus_5116#1 AAGNGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTGTTCTCGTTTGTTGC 402
*** * **** **** ***** * ** * * **** * ** *
consensus_5116#0 GCTCATCCCGCGCAGCAGCATCTGCATCGACCG--AAAACGAT--CGGACAGGATCTGGA 696
consensus_5116#2 GCTCATCCCGCGCAGCAGCATCTGCATCGACCG--AAAACGAT--CGGACAGGATCTGGA 214
consensus_5116#1 ATTT-TCAGGTAGCAAATTGTTAGCATCGATTGTCGTNACGAATGCGGTTTGGAGTGAAT 461
* ** * * * ******* * **** *** ***
consensus_5116#0 CGATCCATC-GTCCGGGATGTCATAGCATCA--CATTCTTGACTACAAGCTTGATTGTTT 753
consensus_5116#2 CGATCCATC-GTCCGGGATGTCATAGCATCA--TATTCTTGACTACAAGCTTGATTGTTT 271
consensus_5116#1 CAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAACTTTGT 521
* * **** ** * ** * ** ** ** * ** * * * * *
consensus_5116#0 CAA---AATCAACTAGGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAG 810
consensus_5116#2 CAA---AATCAACTAGGACTACTGCACCTCCCCGCAAGAACT------------------ 310
consensus_5116#1 CTAGCGAATGAATGTCGGAGACACAAAANACGCGCACTACTCTCTCTACTATATACAACC 581
* * *** ** * ** * * **** *
consensus_5116#0 CCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGT 870
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 ATAAA------------------------------------------------------- 586
consensus_5116#0 AAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTT 930
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 ------------------------------------------------------------
consensus_5116#0 GTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAA 990
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 ------------------------------------------------------------
consensus_5116#0 GATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCG 1050
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 ------------------------------------------------------------
consensus_5116#0 CACGAGGCAAAGGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTTGTTCTC 1110
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 ------------------------------------------------------------
consensus_5116#0 GTTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTACGAATGCGGTTTG 1170
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 ------------------------------------------------------------
consensus_5116#0 GAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGT 1230
consensus_5116#2 ------------------------------------------------------------
consensus_5116#1 ------------------------------------------------------------
consensus_5116#0 AATTTGTTAGGAATGAATGTTGGAGACACAAAA 1263
consensus_5116#2 ---------------------------------
consensus_5116#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||