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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 857 fasta sequence
[CCTTCACTCACTCAAACGCCGCCGCTCGTGCAAATGAAATTGTTTTAGGAAGCGATGGAAGAATGTGTTGAGAAAGATTGCTTCTGCATTGGAAAAAAGAAAATTCAACATTATTTGGCATATTAAAAGCAAGCAAGCAGAAGCTGCAAGCAAACTACACGGATACACACAGACACTGAAAGCAACGGGTAGGGGTCGAATCGTGACGCAAATGCAAAAGGGCGAAATGGGGATTGCGGTTTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTCCAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGAAACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTGATTTGCAGAATGATTTGAACAGTTAAATACATTAGAACAAGATCCATTCCGCAAAACCAACTCCAATTTCAAGCCCATTTGCAGCGTTTGTGAAGCGACGGCCGTACCGGCTGCGGGCGTAGTGTATGAGAAAAGCTTTAAATTTAACTTTAGGTAAATTGTAAAGGTTTATCAAACAATTTAACAATTAAATCGCCTGCATTGATTGA-CGCCTGGTATGTAAACAACCACACACACACACACACACAGAGAGAAACACAGTGTTTTTGGCCTGGTGTGCCTGTGCAAGCGCCTCAAGACACAATGTGTGCGGGCTGAAAATGAGTCGGAAAACCTCCCTTATTTTCGGTCCATTTGCACATCCGTGCGTCTTTGATTCACACGCACGATTGCTGGCACGGAAAAAAAGGGAAAACTCTGATTTTGTAAAGTAATAAC]
[+] EMBL BX627049 [CCTTCACTCACTCAAACGCCGCCGCTCGTGCAAATGAAATTGTTTTAGGAAGCGATGGAAGAATGTGTTGAGAAAGATTGCTTCTGCATTGGAAAAAAGAAAATTCAACATTATTTGGCATATTAAAAGCAAGCAAGCAGAAGCTGCAAGCAAACTACACGGATACACACAGACACTGAAAGCAACGGGTAGGGGTCGAATCGTGACGCAAATGCAAAAGGGCGAAATGGGGATTGCGGTTTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTCCAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGAAACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTGATTTGCAGAATGATTTGAACAGTTAAATACATTAGAACAAGATCCATTCCGCAAAACCAACTCCAATTTCAAGCCCATTTGCAGCGTTTGTGAAGCGACGGCCGTACCGGCTGCGGGCGTAGTGTATGAGAAAAGCTTT AATTTAACTTTAGGTAAATTGTAAAGGGTTATCAAACAATTT ACAATTAAATCGCCTGCATTGATTGA CGCCT ]
[+] EMBL BX625007 [ ggCGCAAATGCAAAAGGGCGAAATGGGGATTGCGGTTTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTCCAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGAAACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTGATTTGCAGAATGATTTGAACAGTTAAATACATTAGAACAAGATCCATTCCGCAAAACCAACTCCAATTTCAAGCCCATTTGCAGCGTTTGTGAAGCGACGGCCGTACCGGCTGCGGGCGTAGTGTATGAGAAAAGCTTTAAATTTAACTTTAGGTAAATTGTAAAGGTTTATCAAACAATTTAACAATTAAATCGCCTGCATTGATTGA CGCCTGGTATGTAAACAACCACACACACACACACACACAGAGAGAAACACAGTGTTTTTGGCCTGGTGTGCCTGTGCAAGCGCCTCAAGACACAATGTGTGCG ]
[+] EMBL BM623032 [ CCGGGACAAAGCCCCCGAAACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTGATTTGCAAAATGGTTTGAATAGTTAAATACATTAGAACAAGATCCATACCGCAAAACCAACTCCAATTTCAAGCCCATTTGCAGCGTTTGTGAAGCGACGGCCGTACCGGCTGCGGGCGTAGTGTATGAGAAAAGCTTTAAATTTAACTTTAGGTAAATTGTAAAGGTTTATCAAACAATTTAACAATTAAATCGCCTGCATTGATTGATCGCCTGGTATGTAAACAACCACTCACACACA A ACAC AGAGAAACACAGTGTTTTTGGCCTGGTGTGCCTGTGCAAGCGCCTCAAGACACAATGTGTGCGGGCTGAAAATGAGTCGGAAAACCTCCCTTATTTTCGGTCCATTTGCACATCCGTGCGTCTTTGATTCACACGCACGATTGCTGGCACGGAAAAAAAGGGAAAACTCTGATTTTGTAAAGTAATAAC]
consensusID : consensus_5123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 714 fasta sequence
[AGATNGCCCGNNGTTAAGTGACGCAAATGCAAAGGGCGAAATGGGNGATTGCTGTNTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTCCAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGAAACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTGATTTGCAGAATGATTTGNACAGTTAAATACATTAGCAACAAGATCCATTCCGNGAAAACCAATCCAATTTCAAGCCCATTTGCAGCGTNTGTGAAGGCGACGGCCGTACCGGCTGCGGGCGTACTGTATTGAGAAAAGCTTTTAAAGTTCTANACTCTACAGGTAACACTCTGTCACAGGTAAATCAAACCAATTAAACAACTTAAACATCGCCTGCATTGATTGAACGCCTNGGTATGTACAAGCAACCACCAACACGAANAAAACACACAAACAGGAGGAGGACAACAGCAGNGGTCACANANNGNGCACTGNGTGTTGCCTTGTGGACACAGCGCCTACAAACGACAACCAAACAGTTGTTGCAGGGGCTGAACAACTCGAGTCTGAGAAAAACTACACTTTCATATCATNACGGGNACCATATTTGGCACAATACTGGGGCGTCTATATGGGTCTACACAACGGCACAAGAANTTG]
[+] EMBL AL693310 [AGATNGCCCGNNGTTAAGTGACGCAAATGCAAAGGGCGAAATGGGNGATTGCTGTNTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTCCAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGAAACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTGATTTGCAGAATGATTTGNACAGTTAAATACATTAGCAACAAGATCCATTCCGNGAAAACCAATCCAATTTCAAGCCCATTTGCAGCGTNTGTGAAGGCGACGGCCGTACCGGCTGCGGGCGTACTGTATTGAGAAAAGCTTTTAAAGTTCTANACTCTACAGGTAACACTCTGTCACAGGTAAATCAAACCAATTAAACAACTTAAACATCGCCTGCATTGATTGAACGCCTNGGTATGTACAAGCAACCACCAACACGAANAAAACACACAAACAGGAGGAGGACAACAGCAGNGGTCACANANNGNGCACTGNGTGTTGCCTTGTGGACACAGCGCCTACAAACGACAACCAAACAGTTGTTGCAGGGGCTGAACAACTCGAGTCTGAGAAAAACTACACTTTCATATCATNACGGGNACCATATTTGGCACAATACTGGGGCGTCTATATGGGTCTACACAACGGCACAAGAANTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5123#0 CCTTCACTCACTCAAACGCCGCCGCTCGTGCAAATGAAATTGTTTTAGGAAGCGATGGAA 60
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 GAATGTGTTGAGAAAGATTGCTTCTGCATTGGAAAAAAGAAAATTCAACATTATTTGGCA 120
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 TATTAAAAGCAAGCAAGCAGAAGCTGCAAGCAAACTACACGGATACACACAGACACTGAA 180
consensus_5123#1 ------------------------------------------------------------
consensus_5123#0 AGCAACGGGTAGGGGTCGAATCGTGACGCAAATGCAAAAGGGCGAAATGGGG-ATTGCGG 239
consensus_5123#1 --AGATNGCCCGNNGTTAA---GTGACGCAAATGCAAA-GGGCGAAATGGGNGATTGCTG 54
* * * ** * **************** ************ ***** *
consensus_5123#0 TTTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTC 299
consensus_5123#1 TNTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTC 114
* **********************************************************
consensus_5123#0 CAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGA 359
consensus_5123#1 CAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGA 174
************************************************************
consensus_5123#0 AACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTG 419
consensus_5123#1 AACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTG 234
************************************************************
consensus_5123#0 ATTTGCAGAATGATTTGAACAGTTAAATACATTAG-AACAAGATCCATTCCGCAAAACCA 478
consensus_5123#1 ATTTGCAGAATGATTTGNACAGTTAAATACATTAGCAACAAGATCCATTCCGNGAAAACC 294
***************** ***************** **************** *** *
consensus_5123#0 ACTCCAATTTCAAGCCCATTTGCAGCGTTTGTGAAG-CGACGGCCGTACCGGCTGCGGGC 537
consensus_5123#1 AATCCAATTTCAAGCCCATTTGCAGCGTNTGTGAAGGCGACGGCCGTACCGGCTGCGGGC 354
* ************************** ******* ***********************
consensus_5123#0 GTAGTGTAT-GAGAAAAGCTTTAAA----TTTAACTTTA--GGTAA-ATTGT---AAAGG 586
consensus_5123#1 GTACTGTATTGAGAAAAGCTTTTAAAGTTCTANACTCTACAGGTAACACTCTGTCACAGG 414
*** ***** ************ ** * *** ** ***** * * * * ***
consensus_5123#0 TTTATCAAAC-AATTTAACAATTAAA---TCGCCTGCATTGATTGA-CGCCTGG---TAT 638
consensus_5123#1 TAAATCAAACCAATTAAACAACTTAAACATCGCCTGCATTGATTGAACGCCTNGGTATGT 474
* ******* **** ***** * ** ***************** ***** * * *
consensus_5123#0 GTAAACAACCACACACAC-------ACACACACACAGA--GAGAAACACAGTGTTTTTGG 689
consensus_5123#1 ACAAGCAACCACCAACACGAANAAAACACACAAACAGGAGGAGGACAACAGCAGNGGTCA 534
** ******* **** ******* **** *** * **** *
consensus_5123#0 CCTGGTGTGC-CTGTGCAAGCGCCTCAAGACACAATGTGTGCGGGCTGAAAATGA---GT 745
consensus_5123#1 CANANNGNGCACTGNGTGTTGCCTTGTGGACACAGCGCCTACAAACGACAACCAAACAGT 594
* * ** *** * * * ****** * * * * ** * **
consensus_5123#0 CGGAAAACCTCCCTTATTTTCGGTCCATTTGCACATCCGTGCGTCTTTGAT-TCACACGC 804
consensus_5123#1 TGTTGCAGGGGCTGAACAACTCGAGTCTGAGAAAAACTACACTTTCATATCATNACGGGN 654
* * * * * * * * * * * * * * ** *
consensus_5123#0 ACGATTGCTGGCACGGAAAAAAAGGGAAAACTCTGATTT-TGTAAAGTAATAAC------ 857
consensus_5123#1 ACCATATTTGGCACAATACTGGGGCGTCTATATGGGTCTACACAACGGCACAAGAANTTG 714
** ** ****** * * * * * * * ** * * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||