cluster # 5128

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Anopheles gambiae
cluster # 5128 cluster # 5128 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5128#0 length = 692 sequences # 2

consensus_5128#1 length = 536 sequences # 1
consensus_5128#2 length = 194 sequences # 1

consensusID : consensus_5128#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 692
fasta sequence

                              [ATCGCCCCAGGGTANGTAGGGCTGCTTCGGAATTCTGATAGGAGTTTCCCATCCGGGACGATAGACGGGCAAACGGTCGTTTCAGTGCGATTAGAATCGTGTAGGAGTGTGGTGCAGATACCAGATCGTGCAGTGCTTTTCGGAGGCACTGGATCCAGTGGTACATTGTCCCAAAACCACAGCAACAGCTACAGCATGCCGGAAGCGTCCCAGTGTCAGATACGGTTCGATAATAACCCGTGCGGGGTCTACTTCCCCGGCCAGTCCCTGTCCGGGTACGTGGAGCTGCGCGTACTGGAAGCGTTCAAAGTAAAAGGTGTCAGCCTGCAAATCAAAGGATTCGCCGAGGTGAAGTGGTCGGAGAGCAGCGGTACGGGCAAATCCCGGCGCACCGTGCACTACCACGGCCGGCAAGACTACATCAACACGGTCACGTACCTGCAGGGGTCACCGGAGGGCAACCCGTTCGATATTGCGCCCGGTACGCACACGTACCGATTCGGCTG-CTGCTG-CCCCCAATCTG-CCACCTCGTTCGAGGGCCAGCACGGGCACATACGGTACACGGTGCGGGTGGTGCTGCACCGCCCGTGGCAAGGTGGACCCGAGTACAAGGTCGGTTTACCGTGCTACGGACGTGAATCTTAACGAGAATGCGCTCACGCTCGCGATGCCCTGCAAGCTGGAGCTGCAAA]

[+] EMBL AL693346             [ATCGCCCCAGGGTANGTAGGGCTGCTTCGGAATTCTGATAGGAGTTTCCCATCCGGGACGATAGACGGGCAAACGGTCGTTTCAGTGCGATTAGAATCGTGTAGGAGTGTGGTGCAGATACCAGATCGTGCAGTGCTTTTCGGAGGCACTGGATCCAGTGGTACATTGTCCCAAAACCACAGCAACAGCTACAGCATGCCGGAAGCGTCCCAGTGTCAGATACGGTTCGATAATAACCCGTGCGGGGTCTACTTCCCCGGCCAGTCCCTGTCCGGGTACGTGGAGCTGCGCGTACTGGAAGCGTTCAAAGTAAAAGGTGTCAGCCTGCAAATCAAAGGATTCGCCGAGGTGAAGTGGTCGGAGAGCAGCGGTACGGGCAAATCCCGGCGCACCGTGCACTACCACGGCCGGCAAGACTACATCAACACGGTCACGTACCTGCAGGGGTCACCGGAGGGCAACCCGTTCGATATTGCGCCCGGTACGCACACGTACCGATTCGGCTG CTGCTG CCCCCAATCTG CCACCTCGTTCGAGGGCCAGCACGGGCACATACGGTACACGGTGCGGGTGGTGCTGCACCGCCCGTGGCAAGGTGGACCCGAGTACAAGGTCGGTTTACCGTGCTACGGACGTGAATCTTAACGAGAATGCGCTCACGCTCGCGATGCCCTGCAAGCTGGAGCTGCAAA]
[+] EMBL BX623345             [                                                                                                               GTGCAGATACCAGATCGTGCAGTGCTTTTCGGAGGCACTGGATCCAGTGGTACATTGTCCCAAAACCACAGCAACAGCTACAGCATGCCGGAAGCGTCCCAGTGTCAGATACGGTTCGATAATAACCCGTGCGGGGTCTACTTCCCCGGCCAGTCCCTGTCCGGGTACGTGGAGCTGCGCGTACTGGAAGCGTTCAAAGTAAAAGGTGTCAGCCTGCAAATCAAAGGATTCGCCGAGGTGAAGTGGTCGGAGAGCAGCGGTACGGGCAAATCCCGGCGCACCGTGCACTACCACGGCCGGCAAGACTACATCAACACGGTCACGTACCTGCAGGGGTCACCGGAGGGCAACCCGTTCGATATTGCGCCCGGTACGCACACGTACCGATTCGGCTGCCTGCTGCCCCCCAATCTGCCCACCTCGTTCGAGGGCCAGCACGGGCACATACGGTACACGGTGCGGGTGGTGCTGCACCGCCCGTGG AAGGTGG                                                                                             ]




>consensus_5128#0
ATCGCCCCAGGGTANGTAGGGCTGCTTCGGAATTCTGATAGGAGTTTCCCATCCGGGACG
ATAGACGGGCAAACGGTCGTTTCAGTGCGATTAGAATCGTGTAGGAGTGTGGTGCAGATA
CCAGATCGTGCAGTGCTTTTCGGAGGCACTGGATCCAGTGGTACATTGTCCCAAAACCAC
AGCAACAGCTACAGCATGCCGGAAGCGTCCCAGTGTCAGATACGGTTCGATAATAACCCG
TGCGGGGTCTACTTCCCCGGCCAGTCCCTGTCCGGGTACGTGGAGCTGCGCGTACTGGAA
GCGTTCAAAGTAAAAGGTGTCAGCCTGCAAATCAAAGGATTCGCCGAGGTGAAGTGGTCG
GAGAGCAGCGGTACGGGCAAATCCCGGCGCACCGTGCACTACCACGGCCGGCAAGACTAC
ATCAACACGGTCACGTACCTGCAGGGGTCACCGGAGGGCAACCCGTTCGATATTGCGCCC
GGTACGCACACGTACCGATTCGGCTGCTGCTGCCCCCAATCTGCCACCTCGTTCGAGGGC
CAGCACGGGCACATACGGTACACGGTGCGGGTGGTGCTGCACCGCCCGTGGCAAGGTGGA
CCCGAGTACAAGGTCGGTTTACCGTGCTACGGACGTGAATCTTAACGAGAATGCGCTCAC
GCTCGCGATGCCCTGCAAGCTGGAGCTGCAAA

consensusID : consensus_5128#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [TCCGCGGACGCGTGGGATCGTGTAGGAGTGTGGTGCAGATACCAGATCGTGCAGTGCTTTTCGGAGGCACTGGATCCAGTGGTACATTGTGTCCCAAACCACAGCAACAGCTACAGCATGCCGGAAGCGTCCCAGTGTCATATACGGTTTGATAATAACCCGTGCGGGGTCTACTTCCCCGGCCAGTCCCTGTCCGGGTACGTGGAGCTGCGCGTTCTGGAAGCGTTCAAAGTAAAAGGTGTCAGCCTGCAAATCAAAGGATTCGCCGAGGTGAAGTGGTCGGAGAGCAGCGGTACGGGCAAATCCCGGCGCACCGTGCACTACCACGGCCGGCAAGACTACATCAACACGGTCACGTACCTGCAGGGGTCACCGGGAGGGCAACCCGTTCGATATTGCGCCCGGTACGCACACGTACCGATTCGGCTGCCTGCTGCCCCCCAACCTGCCCACCTCGTTCGAAGGCCAGCACGGGCACATACGGTACACGGTGCGGGTGGTGCTGCACCGCCCGTGGAAGGTGGACCCGACGTACA]

[+] EMBL BM582473             [TCCGCGGACGCGTGGGATCGTGTAGGAGTGTGGTGCAGATACCAGATCGTGCAGTGCTTTTCGGAGGCACTGGATCCAGTGGTACATTGTGTCCCAAACCACAGCAACAGCTACAGCATGCCGGAAGCGTCCCAGTGTCATATACGGTTTGATAATAACCCGTGCGGGGTCTACTTCCCCGGCCAGTCCCTGTCCGGGTACGTGGAGCTGCGCGTTCTGGAAGCGTTCAAAGTAAAAGGTGTCAGCCTGCAAATCAAAGGATTCGCCGAGGTGAAGTGGTCGGAGAGCAGCGGTACGGGCAAATCCCGGCGCACCGTGCACTACCACGGCCGGCAAGACTACATCAACACGGTCACGTACCTGCAGGGGTCACCGGGAGGGCAACCCGTTCGATATTGCGCCCGGTACGCACACGTACCGATTCGGCTGCCTGCTGCCCCCCAACCTGCCCACCTCGTTCGAAGGCCAGCACGGGCACATACGGTACACGGTGCGGGTGGTGCTGCACCGCCCGTGGAAGGTGGACCCGACGTACA]




>consensus_5128#1
TCCGCGGACGCGTGGGATCGTGTAGGAGTGTGGTGCAGATACCAGATCGTGCAGTGCTTT
TCGGAGGCACTGGATCCAGTGGTACATTGTGTCCCAAACCACAGCAACAGCTACAGCATG
CCGGAAGCGTCCCAGTGTCATATACGGTTTGATAATAACCCGTGCGGGGTCTACTTCCCC
GGCCAGTCCCTGTCCGGGTACGTGGAGCTGCGCGTTCTGGAAGCGTTCAAAGTAAAAGGT
GTCAGCCTGCAAATCAAAGGATTCGCCGAGGTGAAGTGGTCGGAGAGCAGCGGTACGGGC
AAATCCCGGCGCACCGTGCACTACCACGGCCGGCAAGACTACATCAACACGGTCACGTAC
CTGCAGGGGTCACCGGGAGGGCAACCCGTTCGATATTGCGCCCGGTACGCACACGTACCG
ATTCGGCTGCCTGCTGCCCCCCAACCTGCCCACCTCGTTCGAAGGCCAGCACGGGCACAT
ACGGTACACGGTGCGGGTGGTGCTGCACCGCCCGTGGAAGGTGGACCCGACGTACA

consensusID : consensus_5128#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence

                              [ATTATGTGCNCAGGCCAAGAATCGCCCCGAGGNTTAAAACGGTCGTTTCAGTGCGATTAGAATCGTGTAGGAGTGTGGTGCAGATACCAGATCGTGCAGTGCTTTTCGGAGGGCACTGGATCCAGTGGGTACATTGTCCCAAAACCACAGGCAACAGCTACAGCATGCCGGAAGCGTCCCAGTGTCAGATACGG]

[+] EMBL AL696828             [ATTATGTGCNCAGGCCAAGAATCGCCCCGAGGNTTAAAACGGTCGTTTCAGTGCGATTAGAATCGTGTAGGAGTGTGGTGCAGATACCAGATCGTGCAGTGCTTTTCGGAGGGCACTGGATCCAGTGGGTACATTGTCCCAAAACCACAGGCAACAGCTACAGCATGCCGGAAGCGTCCCAGTGTCAGATACGG]




>consensus_5128#2
ATTATGTGCNCAGGCCAAGAATCGCCCCGAGGNTTAAAACGGTCGTTTCAGTGCGATTAG
AATCGTGTAGGAGTGTGGTGCAGATACCAGATCGTGCAGTGCTTTTCGGAGGGCACTGGA
TCCAGTGGGTACATTGTCCCAAAACCACAGGCAACAGCTACAGCATGCCGGAAGCGTCCC
AGTGTCAGATACGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5128#0      ATCGCCCCAGGGTANGTAGGGCTGCTTCGGAATTCTGATAGGAGTTTCCCATCCGGGACG 60
consensus_5128#1      ------------------------------------------------------------
consensus_5128#2      ----------------------------------ATTATGTGCNCAGGCCAAGAATCGCC 26
                                                                                  

consensus_5128#0      ATAGACGGGCAAACGGTCGTTTCAGTGCGATTAGAATCGTGTAGGAGTGTGGTGCAGATA 120
consensus_5128#1      -------------------TCCGCGGACGCGTGGGATCGTGTAGGAGTGTGGTGCAGATA 41
consensus_5128#2      CCGAGGNTTAAAACGGTCGTTTCAGTGCGATTAGAATCGTGTAGGAGTGTGGTGCAGATA 86
                                         *    *  **  * * *************************

consensus_5128#0      CCAGATCGTGCAGTGCTTTTCGGAGG-CACTGGATCCAGTGG-TACATTGT-CCCAAAAC 177
consensus_5128#1      CCAGATCGTGCAGTGCTTTTCGGAGG-CACTGGATCCAGTGG-TACATTGTGTCCCAAAC 99
consensus_5128#2      CCAGATCGTGCAGTGCTTTTCGGAGGGCACTGGATCCAGTGGGTACATTGT-CCCAAAAC 145
                      ************************** *************** ********  ** ****

consensus_5128#0      CACAG-CAACAGCTACAGCATGCCGGAAGCGTCCCAGTGTCAGATACGGTTCGATAATAA 236
consensus_5128#1      CACAG-CAACAGCTACAGCATGCCGGAAGCGTCCCAGTGTCATATACGGTTTGATAATAA 158
consensus_5128#2      CACAGGCAACAGCTACAGCATGCCGGAAGCGTCCCAGTGTCAGATACGG----------- 194
                      ***** ************************************ ******           

consensus_5128#0      CCCGTGCGGGGTCTACTTCCCCGGCCAGTCCCTGTCCGGGTACGTGGAGCTGCGCGTACT 296
consensus_5128#1      CCCGTGCGGGGTCTACTTCCCCGGCCAGTCCCTGTCCGGGTACGTGGAGCTGCGCGTTCT 218
consensus_5128#2      ------------------------------------------------------------
                                                                                  

consensus_5128#0      GGAAGCGTTCAAAGTAAAAGGTGTCAGCCTGCAAATCAAAGGATTCGCCGAGGTGAAGTG 356
consensus_5128#1      GGAAGCGTTCAAAGTAAAAGGTGTCAGCCTGCAAATCAAAGGATTCGCCGAGGTGAAGTG 278
consensus_5128#2      ------------------------------------------------------------
                                                                                  

consensus_5128#0      GTCGGAGAGCAGCGGTACGGGCAAATCCCGGCGCACCGTGCACTACCACGGCCGGCAAGA 416
consensus_5128#1      GTCGGAGAGCAGCGGTACGGGCAAATCCCGGCGCACCGTGCACTACCACGGCCGGCAAGA 338
consensus_5128#2      ------------------------------------------------------------
                                                                                  

consensus_5128#0      CTACATCAACACGGTCACGTACCTGCAGGGGTCACCGG-AGGGCAACCCGTTCGATATTG 475
consensus_5128#1      CTACATCAACACGGTCACGTACCTGCAGGGGTCACCGGGAGGGCAACCCGTTCGATATTG 398
consensus_5128#2      ------------------------------------------------------------
                                                                                  

consensus_5128#0      CGCCCGGTACGCACACGTACCGATTCGGCTGC-TGCTGCCCCC-AATCTGCC-ACCTCGT 532
consensus_5128#1      CGCCCGGTACGCACACGTACCGATTCGGCTGCCTGCTGCCCCCCAACCTGCCCACCTCGT 458
consensus_5128#2      ------------------------------------------------------------
                                                                                  

consensus_5128#0      TCGAGGGCCAGCACGGGCACATACGGTACACGGTGCGGGTGGTGCTGCACCGCCCGTGGC 592
consensus_5128#1      TCGAAGGCCAGCACGGGCACATACGGTACACGGTGCGGGTGGTGCTGCACCGCCCGTGG- 517
consensus_5128#2      ------------------------------------------------------------
                                                                                  

consensus_5128#0      AAGGTGGACCCGA-GTACAAGGTCGGTTTACCGTGCTACGGACGTGAATCTTAACGAGAA 651
consensus_5128#1      AAGGTGGACCCGACGTACA----------------------------------------- 536
consensus_5128#2      ------------------------------------------------------------
                                                                                  

consensus_5128#0      TGCGCTCACGCTCGCGATGCCCTGCAAGCTGGAGCTGCAAA 692
consensus_5128#1      -----------------------------------------
consensus_5128#2      -----------------------------------------