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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5135#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence
[GAATCGCCCGAGGTTNGAAAACTCGTCATCGCACAACAAACGGTTCATGTCGCCGGCGTACGAAAAGGCGAAAGAATTGGATACGGCTGGTGTGCAGCTACAACGAATGGAACATGTGGCCAAAGAGTTGATACCACTGTTAAAAAATGCACCCACCGGTTCCATATGGCTAGTGACGGGAGGCAAACCGGCGAAAGAGATACCGTACAGCAGCATTTAAAAATATTGCCCCATCGGATTAAGTACATTCTTCAAACTTCCCATTCGAGCATTCGATTCGTACCATATTCATGTTAATTGACCAAGTCCACGGTCAAGGGTTAACACAAGCGTATCATACAGATTCCATTCCAGTTCAGGGATGTAACTATCTTTCGGTTCCATAAATCACTCTGACTTAAAGCTAAAGCTCTACATACCATTGATTATGCTTCGCTCCATTTATACTATTACACCAGCGCCAGTGAATTCGTGCACAGTAACGGCTGCACGTGAGCGAGTATCCCGCGCTCACCAGCACGTTTCCGTGTATTAGCATAAGAAAGTCGGTATCTTGCAAAGGAATCATGATANTTAATCTTCCAACACACATTGTGGGAATTTTCGCAATAGCAATGGGCGTTGCGGGAAATAATATTCGATATGATACCGAAACGCTTTTGATATTAATTTACCATACCAGACAAAGCAACGGAAACGGAAATGCANATATCAAATGTTCGTAAGA]
[+] EMBL AL693475 [GAATCGCCCGAGGTTNGAAAACTCGTCATCGCACAACAAACGGTTCATGTCGCCGGCGTACGAAAAGGCGAAAGAATTGGATACGGCTGGTGTGCAGCTACAACGAATGGAACATGTGGCCAAAGAGTTGATACCACTGTTAAAAAATGCACCCACCGGTTCCATATGGCTAGTGACGGGAGGCAAACCGGCGAAAGAGATACCGTACAGCAGCATTTAAAAATATTGCCCCATCGGATTAAGTACATTCTTCAAACTTCCCATTCGAGCATTCGATTCGTACCATATTCATGTTAATTGACCAAGTCCACGGTCAAGGGTTAACACAAGCGTATCATACAGATTCCATTCCAGTTCAGGGATGTAACTATCTTTCGGTTCCATAAATCACTCTGACTTAAAGCTAAAGCTCTACATACCATTGATTATGCTTCGCTCCATTTATACTATTACACCAGCGCCAGTGAATTCGTGCACAGTAACGGCTGCACGTGAGCGAGTATCCCGCGCTCACCAGCACGTTTCCGTGTATTAGCATAAGAAAGTCGGTATCTTGCAAAGGAATCATGATANTTAATCTTCCAACACACATTGTGGGAATTTTCGCAATAGCAATGGGCGTTGCGGGAAATAATATTCGATATGATACCGAAACGCTTTTGATATTAATTTACCATACCAGACAAAGCAACGGAAACGGAAATGCANATATCAAATGTTCGTAAGA]
consensusID : consensus_5135#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[CAGAATCGCCCCGAGGTTGGTGAACATGTTTAAGGAGGTAAACATTGTGATAAACAACGCAGAAATCATGAACGACAACTTCTGGGAGCTGGAGGTGGATGTGAATCTGAACGGTGCCATACGCGGAACGCTGCTAGCGCAAAAGTTTATGGACAAAAGCAAAGGAAAGGGGGGCGGCGTGCTGGTCAACATTGGTTCGGGTGTTAGCGTCACGCCCCAGCTATCGACACCGATCTACACCGCCACCAAGCATGCCATTCTCGGGCTAACCAAAGCCTGTGGTGATCCGTTCCATCACGCCAACACCAACGTGCGAGCATTTGCTTACTGTCCTGGACCGATCGAAAACTCGTCATCGCACAACAAACGGTTCATGTCGCCGGCGTACGAAAAGGCGAAAGAATTGGATATGGCTGGTGTGCAGCTACAACGAATGGAACATGTGGCCAAAGAGTTGATACCACTATTAAAAAATGCACCCACCGGTTCCATATGGCTAGTGACGGNGAGGCAAACCGGCGAAAGAGATACCGTACAGCAGCATTTAAACACATATTGCCCCATCGGATTACGTACATTCTTCAAACTTCCCATTCGCAGCATTCGATTCGTACCATATTCATGTTAATTGACCAAGTCCACGGTCAAGGGTTAACACAAGCGTATCATACAGATT]
[+] EMBL AL931822 [CAGAATCGCCCCGAGGTTGGTGAACATGTTTAAGGAGGTAAACATTGTGATAAACAACGCAGAAATCATGAACGACAACTTCTGGGAGCTGGAGGTGGATGTGAATCTGAACGGTGCCATACGCGGAACGCTGCTAGCGCAAAAGTTTATGGACAAAAGCAAAGGAAAGGGGGGCGGCGTGCTGGTCAACATTGGTTCGGGTGTTAGCGTCACGCCCCAGCTATCGACACCGATCTACACCGCCACCAAGCATGCCATTCTCGGGCTAACCAAAGCCTGTGGTGATCCGTTCCATCACGCCAACACCAACGTGCGAGCATTTGCTTACTGTCCTGGACCGATCGAAAACTCGTCATCGCACAACAAACGGTTCATGTCGCCGGCGTACGAAAAGGCGAAAGAATTGGATATGGCTGGTGTGCAGCTACAACGAATGGAACATGTGGCCAAAGAGTTGATACCACTATTAAAAAATGCACCCACCGGTTCCATATGGCTAGTGACGGNGAGGCAAACCGGCGAAAGAGATACCGTACAGCAGCATTTAAACACATATTGCCCCATCGGATTACGTACATTCTTCAAACTTCCCATTCGCAGCATTCGATTCGTACCATATTCATGTTAATTGACCAAGTCCACGGTCAAGGGTTAACACAAGCGTATCATACAGATT]
consensusID : consensus_5135#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[CCGCGGACGCGTGGGTACACATACACGCTGTCAGCGTGCAAACGATAAAAAAAGGTTCCGCTGAACGGAATTTGGTGAAGTTTAAGTGAAACAATAATAGAGATGGATTTGAAAAATAAAGTCGCACTTGTGACCGGCGCTGCCACTGGGCTAGGCAGGGCGTTTAGTGAGGAGTTGCTAAAACATGGAGCTAAGGTTGTCATATGCGATTTAGACTCGGACGCCGGCGAATTGACGGTGGAAGAGCTCGAAAAACAATACGGCGCACGGGTACTGTTTTGCCATTGTGACGTGACCGACTACATCCAGTTCGAAGAGGCATTCGAGTACACGGTGAACATGTTTAAGGAGGTAAACATTGTGATAAACAACGCAGAAATCATGAACGATAACTTCTGGGAGCTGGAGGTGGATGTGAATCTGAACGGTGCCATACGCGGAACGCTGCTAGCGCAAAAGTTTATGGACAAAAGCAAAGGAAAGGGGGGTGGTGTGCTGGTCAACATTGGTTCGGGTGTTAGCGTCACGCCGCAGCTATCGACACCGATCTACACCGCCACCAAGCATGCCATTCTCGGGCTAACCAAAGCCTGTGGTGATCCGTTCCATCACGCCAACACCAACGTGCGAGCATTTGCTTACTGTCCTGGACCGATCGAAAACTCGTCATCG]
[+] EMBL BM607204 [CCGCGGACGCGTGGGTACACATACACGCTGTCAGCGTGCAAACGATAAAAAAAGGTTCCGCTGAACGGAATTTGGTGAAGTTTAAGTGAAACAATAATAGAGATGGATTTGAAAAATAAAGTCGCACTTGTGACCGGCGCTGCCACTGGGCTAGGCAGGGCGTTTAGTGAGGAGTTGCTAAAACATGGAGCTAAGGTTGTCATATGCGATTTAGACTCGGACGCCGGCGAATTGACGGTGGAAGAGCTCGAAAAACAATACGGCGCACGGGTACTGTTTTGCCATTGTGACGTGACCGACTACATCCAGTTCGAAGAGGCATTCGAGTACACGGTGAACATGTTTAAGGAGGTAAACATTGTGATAAACAACGCAGAAATCATGAACGATAACTTCTGGGAGCTGGAGGTGGATGTGAATCTGAACGGTGCCATACGCGGAACGCTGCTAGCGCAAAAGTTTATGGACAAAAGCAAAGGAAAGGGGGGTGGTGTGCTGGTCAACATTGGTTCGGGTGTTAGCGTCACGCCGCAGCTATCGACACCGATCTACACCGCCACCAAGCATGCCATTCTCGGGCTAACCAAAGCCTGTGGTGATCCGTTCCATCACGCCAACACCAACGTGCGAGCATTTGCTTACTGTCCTGGACCGATCGAAAACTCGTCATCG]
consensusID : consensus_5135#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence
[CCGGTGAACGACATTGGATATTCGTCTCGTACCTTCCGCAAGCAACCCGTTCTCCAATTTCATTCCTTCTAGGTTTTGGAAACCCTTTTCGGAATTGTTTGTGTGCTTAAACGCGAATCGTGCAGGGCCGTGGTCCAATATCCCCTTTATTCTGTTCCAAACCCAGTTAAAAGCTGCGAAAGGCTTGCTGTGTAGTGTTTTGCGTCAAAGTCCTTGCGCGGGGTGTGTCTACAGTTTTCCGGGTGTGGGGTCAGTTCCGTGAATCATTCAGCCAGTATCATCGGTTGCTTGCTCTAACTTGGTACACATACACGCTGTCAGCGTGCAAACGATAAAAAAGGTTCCGCTGAACGGAGTTTGGTGAAGTTTAAGTGAAACAGTAATAGAGATGGATTTGAAAAATAAAGTCGCACTTGTGACCGGCGCTGCCACTGGGCTAGGCAGGGCGTTTAGTGAGGAGTTGCTAAAACATGGAGCTAAGGTTGTTATATGCGATTTGGACTCGGACGCCGGCGAATTGACCGTGGAAGAGCTCGAAAAACAATACGGCGC]
[+] EMBL BM622471 [CCGGTGAACGACATTGGATATTCGTCTCGTACCTTCCGCAAGCAACCCGTTCTCCAATTTCATTCCTTCTAGGTTTTGGAAACCCTTTTCGGAATTGTTTGTGTGCTTAAACGCGAATCGTGCAGGGCCGTGGTCCAATATCCCCTTTATTCTGTTCCAAACCCAGTTAAAAGCTGCGAAAGGCTTGCTGTGTAGTGTTTTGCGTCAAAGTCCTTGCGCGGGGTGTGTCTACAGTTTTCCGGGTGTGGGGTCAGTTCCGTGAATCATTCAGCCAGTATCATCGGTTGCTTGCTCTAACTTGGTACACATACACGCTGTCAGCGTGCAAACGATAAAAAAGGTTCCGCTGAACGGAGTTTGGTGAAGTTTAAGTGAAACAGTAATAGAGATGGATTTGAAAAATAAAGTCGCACTTGTGACCGGCGCTGCCACTGGGCTAGGCAGGGCGTTTAGTGAGGAGTTGCTAAAACATGGAGCTAAGGTTGTTATATGCGATTTGGACTCGGACGCCGGCGAATTGACCGTGGAAGAGCTCGAAAAACAATACGGCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5135#2 --------------------------------------------------------CCGC 4
consensus_5135#3 -------------------------------------------------------CCGGT 5
consensus_5135#0 --GAATCGCCC-GAGGTTNGAAAACTCGTCATCGCACAACAAACGGTTCATGTCGCCGGC 57
consensus_5135#1 CAGAATCGCCCCGAGGTTGGTGAACATGTTTAAGGA-GGTAAACA-TTGTGATAAACAAC 58
*
consensus_5135#2 GGACGCG--TGGGTACACATA-CACGCTGTCAGCGTGCAAACGATAAAAAAAGGTTCCGC 61
consensus_5135#3 GAACGACATTGGATATTCGTCTCGTACCTTCCGCAAGCAACCCGTTCTCCAATTTCATTC 65
consensus_5135#0 GTACGAAAAGGCGAAAGAATTGGATACGGCTGGTGTGCAGCTACAACGAATGGAACATGT 117
consensus_5135#1 GCA-GAAATCATGAACGA--CAACTTCTGGGAGCTGGAGGTGGATGTGAATCTGA-ACGG 114
* * * * * * *
consensus_5135#2 TGAACGGAATTTGGTGAAGTTTAAGTGAAACAATAATAG-AGATGGATTTGAAAAATAA- 119
consensus_5135#3 CTTCTAGGTTTTGGAAACCCTTTTCGGAATTGTTTGTGT-GCTTAAACGCGAATCGTGC- 123
consensus_5135#0 GGCCAAAGAGTTGATACCACTGTTAAAAAATGCACCCACCGGTTCCATATGGCTAGTGAC 177
consensus_5135#1 TGCCATACGCGGAACGCTGCTAGCGCAAAA---GTTTATGGACAAAAGCAAAGGAAAGGG 171
* ** *
consensus_5135#2 ---AGTCGCACTTGTGACCGGCGCTGCCACTGGGCTAGGCAGGGCGTTTAGTGAGGAGTT 176
consensus_5135#3 ---AGG-GCCGTGGT--CCAATATCCCCTTTATTCTGTTCCAAAC--CCAGTTAAAAGCT 175
consensus_5135#0 GGGAGGCAAACCGGCGAAAGAGATACCGTACAGCAGCATTTAAAAATATTGCCCCATCGG 237
consensus_5135#1 GGGCGGCGTGCTGGTCAACATTGGTTCGGGTGTTAGCGTCACGCCCCAGCTATCGACACC 231
* * *
consensus_5135#2 GCTAAAACATGGAGCTAAGGTTGTCATATGCGATTTAGACTCGGACGCCGGCGAATTGAC 236
consensus_5135#3 GCGAAAGGCTTGCTGT---GTAGTGTTTTGCGTCAAAGTCCTTGCGCGGGGTGTGTCTAC 232
consensus_5135#0 ATTAAGTACATTCTTCAAACTTCCCATTCGAGCATTCGATTCGTACCATATTCA--TGTT 295
consensus_5135#1 GATCTACACCGCCACCAAGCATGCCATTCTCGGGCTAACCAAAGCCTGTGGTGA--T-CC 288
* *
consensus_5135#2 GGTGGAAGAGCTCGAAAAACAATACGGCGCACGGGTACTGTTTTGCCATTGTGACGTGAC 296
consensus_5135#3 AGTTTTCCGGGTGTGGGGTCAGTTC------CGTGAATCATTCAGCCAGTATCAT-CGGT 285
consensus_5135#0 AATTGACCAAGTCCACGGTCAAGGGTTAACACAAGCGT-ATCATACAGATTCCATTCCAG 354
consensus_5135#1 GTTCCATCACGCCAACACCAACGTGCGAGCATTTGCTT-ACTGTCCTGGACCGATCGAAA 347
* * * * *
consensus_5135#2 CGACTACATCCAGTTCGAAGAGGCATTCGAGTACACGGTGAACATGTTTAAGGAGGTAAA 356
consensus_5135#3 TGCTTGC-TCTAACTTG-----GTACACATACACGCTGTCAGCGTGCAAACGATAAAAAA 339
consensus_5135#0 TTCAGGGATGTAACTATCTTTCGGTTCCATAAATCACTCTGACTTAAAGCTAAAGCTCTA 414
consensus_5135#1 ACTCGTCATCGCAC-AACAAACGGTTCATGTCGCCGGCGTACGAAAAGGCGAAAGAATTG 406
* *
consensus_5135#2 CATTGTGATAAACAACGCAGAAATCATGAACGATAACTTCTG-GGAGCTGGAGGTGGATG 415
consensus_5135#3 GGTTCCGCTGAACGGAGTT----TGGTGAAGTTTAAGTGAAACAGTAATAGAGATGGATT 395
consensus_5135#0 CATACCATTGATTATGCTT----CGCTCCATTTATACTATTACACCAGCGCCAGTGAATT 470
consensus_5135#1 GATATGGCTG---GTGTGC----AGCTACAACGAA--TGGAACATGTG-GCCAAAGAGTT 456
* * * * * * *
consensus_5135#2 TGAATC--TGAACGGTGCCATACGCG-GAACGCTGCTAGCGCAAAAGTTTATGGACAAAA 472
consensus_5135#3 TGAA-----AAATAAAGTCGCACTTGTGACCGGCGCTGCCAC---------TGGGCTAG- 440
consensus_5135#0 CGTGCA--CAGTAACGGCTGCACGTGAGCGAGTATCCCGCGCTCACCAGCACGTTTCCGT 528
consensus_5135#1 GATACCACTATTAAAAAATGCACCC--ACCGGTTCCATATGGCTAGTG--ACGGNGAGGC 512
** * * *
consensus_5135#2 GCAAAGGAAAGGGGGGTGGTGTGCTGGTCAACATTGGTTCGGGTGTTAGCGTCACGCCGC 532
consensus_5135#3 GCAGGGCGTTTAGTGAGGAGTTGCTAA--AACATGGAGCTAAG-GTTGTTAT-ATGC--- 493
consensus_5135#0 GTATTAGCATAAGAAAGTCGGTATCTTGCAAAGGAATCATGATANTTAATCTTCCAACAC 588
consensus_5135#1 AAACCGGCGAAAGAGA-----TACCGTACAGCAGCATTTAAACACATATTGCCCCATCGG 567
* * * * *
consensus_5135#2 A-GCTATCGACACCGATCTACACCGCCACCAAGCATGCCATTCTCGGGCTAACCAAAGCC 591
consensus_5135#3 --GATTTGGACTCGGA-------CGCCGGCGAATTGACCGTGGAAGAGCTCGAAAAACAA 544
consensus_5135#0 ACATTGTGGGAATTTT-------CGCAATAGCAATGGGCGTTGCGGGAAATAATATTCGA 641
consensus_5135#1 A--TTACGTACATTCT-------TCAAAC-----------TTCCCATTCGCAGCATTCGA 607
* * *
consensus_5135#2 TGTGGTGATCCGTTCCATCACGCCAACACCAACGTGCGAGCATTTGCTTACTGTCCTGGA 651
consensus_5135#3 TACGGCGC---------------------------------------------------- 552
consensus_5135#0 TATGATACCGAAACGCTTTTGATATTAATTTACCATACCAGACAAAGCAACGGAAACGGA 701
consensus_5135#1 T-TCGTACCA------TATTCATGTTAATTGACCAAGTCC-ACGGTCAAGGGTTAACACA 659
*
consensus_5135#2 CCGATCGAAAACTCGTCATCG----- 672
consensus_5135#3 --------------------------
consensus_5135#0 AATGCANATATCAAATGTTCGTAAGA 727
consensus_5135#1 AGCGTATCATACAGATT--------- 676
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||