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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 861 fasta sequence
[TGTGTTAAGCTGGTGATGTTGTTCAAAGTGTTGCTCCTATCGTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCACACCACGGAAAATGTGCAATGTTTAATCGAGCTTAAGGAGCTGCTGAAGCTAGTATTTAAACTTCTTTCTATAGAATCGTTTGATTTGTTAAGCGAAATGAATCAATTCGAAAAAATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAGTCGGCTGAGAACAATCACGGCAACACCGAGCAGCCTATTCATTTCCTGTTGGTAAAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTTTCTTGCTTTAAGCAGACTCGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAAATTACGCCAACAATCCACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGTCTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGATTATCCAGCTGTTGCGCTTTTGGATACGTGGTAACAAATCCTTTCAACAGTGGTAATACCTTCAAGTCAATGTCCAATCGTCAATGGTGAGACCGAGATAATAAAGGATGGCGTTTTAACTGCCCATTTTAGATAAGATAAACCGCGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGACACCTGACCAGATAAGACTGCACACACACACACACACACACACACACACCCACGCCGGAGATGATAAGATTGCAATTGTTGTAAGTCACGGCAGATTTGCTTGCATTGATTGACGGTCGAGTGGAAATTTGAATGGAATCTGGTAAATTAA]
[+] EMBL CNS09AYT [TGTGTTAAGCTGGTGATGTTGTTCAAAGTGTTGCTCCTATCGTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCACACCACGGAAAATGTGCAATGTTTAATCGAGCTTAAGGAGCTGCTGAAGCTAGTATTTAAACTTCTTTCTATAGAATCGTTTGATTTGTTAAGCGAAATGAATCAATTCGAAAAAATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAGTCGGCTGAGAACAATCACGGCAACACCGAGCAGCCTATTCATTTCCTGTTGGTAAAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTTTCTTGCTTTAAGCAGACTCGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAAATTACGCCAACAATCCACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGTCTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGATTATCCAGCTGTTGCGCTTTTGGATACGTGGTAACAAATCCTTTCAACAGTGGTAATACCTTCAAGTCAATGTCCAATCGTCAATGGTGAGACCGAGATAATAAAGGATGGCGTTTTAACTGCCCATTTTAGATAAGATAAACCGCGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGACACCTGACCAGATAAGACTGCACACACACACACACACACACACACACACCCACGCCGGAGATGATAAGATTGCAATTGTTGTAAGTCACGGCAGATTTGCTTGCATTGATTGACGGTCGAGTGGAAATTTGAATGGAATCTGGTAAATTAA]
consensusID : consensus_5144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence
[GAGGTTATGTTGTCAAGTGTTACTCCTATCCTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCCCATCACAGAAAATGTNTAAATGTTTAATCGAAGTTAAGGAGCTGCTGAAGCTAGTATTTANACTTCTTTCTGTAGAATCGTNATGATATTGTTAAGACGAAATGAATCAATTCCAANAACATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAATCGGCTGAGAACAATCACGGCAACACTGAGCAGCCTATTCATTTCCTGTTGGAACNAGTTGGATATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTATTCCTGCTTTAAGCAGACTACGCTTTAATCGCGAACCGGCTAGCCACGTAGCCAAGCTTACGCCAACAATCCAACATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTATCGTACTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGGCATTATCCAGGCTGTTGCGCATTATTGGATACGTGGTNACAAATCCTTTCANCNAGTGGTCAATACCTTCAAGGTCAATGTCCAATCGTCCACATGTTGACGACCGNGCATANACTAANGGATGGCGTAAGAACTGCC]
[+] EMBL AL693946 [GAGGTTATGTTGTCAAGTGTTACTCCTATCCTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCCCATCACAGAAAATGTNTAAATGTTTAATCGAAGTTAAGGAGCTGCTGAAGCTAGTATTTANACTTCTTTCTGTAGAATCGTNATGATATTGTTAAGACGAAATGAATCAATTCCAANAACATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAATCGGCTGAGAACAATCACGGCAACACTGAGCAGCCTATTCATTTCCTGTTGGAACNAGTTGGATATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTATTCCTGCTTTAAGCAGACTACGCTTTAATCGCGAACCGGCTAGCCACGTAGCCAAGCTTACGCCAACAATCCAACATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTATCGTACTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGGCATTATCCAGGCTGTTGCGCATTATTGGATACGTGGTNACAAATCCTTTCANCNAGTGGTCAATACCTTCAAGGTCAATGTCCAATCGTCCACATGTTGACGACCGNGCATANACTAANGGATGGCGTAAGAACTGCC]
[+] EMBL BX617305 [ aAAGTGTTACTCCTATCCTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGTCCGATCCTCCCATCACAGAAAATGT TAAATGTTTAATCGAAGTTAAGGAGCTGCTGAAGCTAGTATTTAAACTTCTTTCTGTAGAATCGT TTGAT TTGTTAAG CGAAATGAATCAATTCCAA AAAATGCAAGACCAGGAAAGTTTCAGCTCTGCATCATCTTCGAAATCGGCTGAGAACAATCACGGCAACACTGAGCAGCCTATTCATTTCCTGTTGGAA AAGTTGGATATGCTAATGAGGAACTTTAACCAAACAGTTTGCACCCT TTCCTGCTTTAAGCAGACT CGCTTTAATCGCGAACCGGCTAGCCACGTAGCCAA CTTACGCCAACAATCCACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGT CTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGat ]
consensusID : consensus_5144#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[TGCTCCTATCGTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGACCGATCCTCCCATCACGGAAAATGTTCAATGTATAATCGAGCTTAAGGAGCTGCTGAAGCTCGTATTTAAACTTCTTTCTGTAGAATCGTTTGATTTGTTAAGCGAAATGAATCAATTCGAAAAAATGCAAGCTCAAGAAAGTTTCAGCTCTGCATCATCTTCGAAGTCGGCTGAGAACAATCACAACAACACCGAGCAGTCAATTTATTTCCTGTTGGAAAAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTTTCCTGCTTTAAGCAGACTCGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAACTTACGCCAACAATCAACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGTCTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGATTATCCAGCTGTTGCGCTTTTGGATACGTGGTAACAAATCCTTTCAACAGTGATAAGATAAACCGCGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGACACCT]
[+] EMBL BX615809 [TGCTCCTATCGTGCTGTTTCGCACATCCAACCAATCAGCAGCAAACGACCGATCCTCCCATCACGGAAAATGTTCAATGTATAATCGAGCTTAAGGAGCTGCTGAAGCTCGTATTTAAACTTCTTTCTGTAGAATCGTTTGATTTGTTAAGCGAAATGAATCAATTCGAAAAAATGCAAGCTCAAGAAAGTTTCAGCTCTGCATCATCTTCGAAGTCGGCTGAGAACAATCACAACAACACCGAGCAGTCAATTTATTTCCTGTTGGAAAAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTTTCCTGCTTTAAGCAGACTCGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAACTTACGCCAACAATCAACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGTCTTCTGCACTGGATGTACGTAGAGCCTACGTACGAGATTATCCAGCTGTTGCGCTTTTGGATACGTGGTAACAAATCCTTTCAACAGTGATAAGATAAACCGCGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATACCGTGACACCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5144#0 TGTGTTAAGCTGGTGATGTTGTTCAAAGTGTTGCTCCTATCGTGCTGTTTCGCACATCCA 60
consensus_5144#2 -------------------------------TGCTCCTATCGTGCTGTTTCGCACATCCA 29
consensus_5144#1 -----------GAGGTTATGTTGTCAAGTGTTACTCCTATCCTGCTGTTTCGCACATCCA 49
* ******** ******************
consensus_5144#0 ACCAATCAGCAGCAAACGTCCGATCCTCACACCACGGAAAATGTGCAA-TGTTTAATCGA 119
consensus_5144#2 ACCAATCAGCAGCAAACGACCGATCCTCCCATCACGGAAAATGTTCAA-TGTATAATCGA 88
consensus_5144#1 ACCAATCAGCAGCAAACGTCCGATCCTCCCATCACAGAAAATGTNTAAATGTTTAATCGA 109
****************** ********* ** *** ******** ** *** *******
consensus_5144#0 GCTTAAGGAGCTGCTGAAGCTAGTATTTAAACTTCTTTCTATAGAATCGTT-TGAT-TTG 177
consensus_5144#2 GCTTAAGGAGCTGCTGAAGCTCGTATTTAAACTTCTTTCTGTAGAATCGTT-TGAT-TTG 146
consensus_5144#1 AGTTAAGGAGCTGCTGAAGCTAGTATTTANACTTCTTTCTGTAGAATCGTNATGATATTG 169
******************* ******* ********** ********* **** ***
consensus_5144#0 TTAAG-CGAAATGAATCAATTCGAAAAA-ATGCAAGACCAGGAAAGTTTCAGCTCTGCAT 235
consensus_5144#2 TTAAG-CGAAATGAATCAATTCGAAAAA-ATGCAAGCTCAAGAAAGTTTCAGCTCTGCAT 204
consensus_5144#1 TTAAGACGAAATGAATCAATTCCAANAACATGCAAGACCAGGAAAGTTTCAGCTCTGCAT 229
***** **************** ** ** ******* ** *******************
consensus_5144#0 CATCTTCGAAGTCGGCTGAGAACAATCACGGCAACACCGAGCAGCCTATTCATTTCCTGT 295
consensus_5144#2 CATCTTCGAAGTCGGCTGAGAACAATCACAACAACACCGAGCAGTCAATTTATTTCCTGT 264
consensus_5144#1 CATCTTCGAAATCGGCTGAGAACAATCACGGCAACACTGAGCAGCCTATTCATTTCCTGT 289
********** ****************** ****** ****** * *** *********
consensus_5144#0 TGGTA-AAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCT-TTCTTG 353
consensus_5144#2 TGGAA-AAGTTGGACATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCT-TTCCTG 322
consensus_5144#1 TGGAACNAGTTGGATATGCTAATGAGGAACTTTAACCAAACAGTTGGCACCCTATTCCTG 349
*** * ******* ************************************** *** **
consensus_5144#0 CTTTAAGCAGACT-CGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAA-ATTACGCCAA 411
consensus_5144#2 CTTTAAGCAGACT-CGCTTTAATCGCGAAACGGCTAGCCACGTAGCCAA-CTTACGCCAA 380
consensus_5144#1 CTTTAAGCAGACTACGCTTTAATCGCGAACCGGCTAGCCACGTAGCCAAGCTTACGCCAA 409
************* *************** ******************* *********
consensus_5144#0 CAATCCACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGT-CTTCTGCA 470
consensus_5144#2 CAATCAACCATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTTTCGT-CTTCTGCA 439
consensus_5144#1 CAATCCAACATCAATTGCGACACTTCTCCAATGGTGTGTATGGTGTATCGTACTTCTGCA 469
***** * ************************************** **** ********
consensus_5144#0 CTGGATGTACGTAGAGCCTACGTACGAG--ATTATCCAG-CTGTTGCGCTTT--TGGATA 525
consensus_5144#2 CTGGATGTACGTAGAGCCTACGTACGAG--ATTATCCAG-CTGTTGCGCTTT--TGGATA 494
consensus_5144#1 CTGGATGTACGTAGAGCCTACGTACGAGGCATTATCCAGGCTGTTGCGCATTATTGGATA 529
**************************** ********* ********* ** ******
consensus_5144#0 CGTGGTAACAAATCCTTTCAACA-GTGGTAATACCTTCAAGTCAATGTCCAATCGTCAAT 584
consensus_5144#2 CGTGGTAACAAATCCTTTCAACA-GTG--------------------------------- 520
consensus_5144#1 CGTGGTNACAAATCCTTTCANCNAGTGGTCAATACCTTCAAGGT---------------- 573
****** ************* * ***
consensus_5144#0 GGTGAGACCGAGATAATAAAGGATGGCGTTTTAACTGCCCATTTTAGATAAGATAAACCG 644
consensus_5144#2 -----------------------------------------------ATAAGATAAACCG 533
consensus_5144#1 -----------------------------------------------CAATGTCCAATCG 586
* * ** **
consensus_5144#0 CGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATA 704
consensus_5144#2 CGCTCCTATCGATCGAAGGCGTTCGAACTGCCGGAAGGGATAGTCCCGACCCCGACAATA 593
consensus_5144#1 TCCACATGTTGA-CGACCGNGCATANACTAANGGATGGCGTAAGAACTGCC--------- 636
* * * * ** *** * * *** *** ** ** * **
consensus_5144#0 CCGTGACACCTGACCAGATAAGACTGCACACACACACACACACACACACACACACCCACG 764
consensus_5144#2 CCGTGACACCT------------------------------------------------- 604
consensus_5144#1 ------------------------------------------------------------
consensus_5144#0 CCGGAGATGATAAGATTGCAATTGTTGTAAGTCACGGCAGATTTGCTTGCATTGATTGAC 824
consensus_5144#2 ------------------------------------------------------------
consensus_5144#1 ------------------------------------------------------------
consensus_5144#0 GGTCGAGTGGAAATTTGAATGGAATCTGGTAAATTAA 861
consensus_5144#2 -------------------------------------
consensus_5144#1 -------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||