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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence
[CAGAATCGCCCCGCACGGTTNANCTCAAAAAGAAACATTGGTACAGCATGACAAAATTGCTTGTATTTGCTGGCTTGTGCTGCCTCTTTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGAGTTCAGGGCAACTTTGTGCCACGCAATTCGTCA-GCA-GATAGAGGTCGTTGCCGAAAGGGTCAAACAGGATTGGGGAAACTTAATTTTCCCCCTTCTTAATAAATTTGGCCGGAAAATTTTTTGGTTCCAGGTTGGCGGAGGGGGGGGGTAAGAAGGAAAGTAAGAAAAACGGGGTTTGGCCTAACCGGGAAAAGGGGTTAACCCAATTGGTTAACCGGAACATTAACCGGAAGACCGGCCGGAAGGGTTGGTTGGTTGGAATTCCAATTCCCCCCGGAAGGTTTTGGTCGAACCCTGGTCTTGGNGAACCGGGANACGGAAACAAATTCCGCCTGGGTAACCTGGGTTCGGAAGAAAAACTGGGAAACCTTCCTTCAATTCCCCTGGNCGACCAACAGGAAAACCCTGGGCTTCACCAAAAGCTTTTTCCAAGTTCCAATTCGTTGGGCANTTGTAAAACCGGGAAACTTAGCGAAAAGAACNCGACGGGGCACAAGGTATTAACACCTTGGGTTGGGCAACACCGGGGCGTTGTGAGAACCACTTAATTTCTTGGAATTTAGCACCAGACCGGAAAGAGAANACGGGTTNCTTCGGTGGGGAACCCCAATTACGCCCAAGGCAAAACANAAACAGGTTAGGNCCAAGGTATGGTTCTACAATATGNAACAAAACGTCGGNACGTGGGCCNGCCCCCTTGGTTGTGCATTAGGGGGGTATAAAGGGGCGCCCCTGGTGAATTGTGGCGTTTACTTACGTCTTGGACCGGCGCTTNTTCACCGCCGCGAGAAATTTAGG]
[+] EMBL AL696100 [CAGAATCGCCCCGCACGGTTNANCTCAAAAAGAAACATTGGTACAGCATGACAAAATTGCTTGTATTTGCTGGCTTGTGCTGCCTCTTTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGAGTTCAGGGCAACTTTGTGCCACGCAATTCGTCA GCA GATAGAGGTCGTT ]
[+] EMBL AL694151 [ AATCGCCCCG A GGTT A CTC AAAAGAAACATT GTACAGCATGACAAAATTGCTTGTATTTGCTGGCTTGTGCTGCCTC TTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGA TTCAGGGCAACTTTGTGCCACGCAATTCGTCAGGCAGGATAGA GTCTTTGCCGAAAGGGTCAAACAGGATTGGGGAAACTTAATTTTCCCCCTTCTTAATAAATTTGGCCGGAAAATTTTTTGGTTCCAGGTTGGCGGAGGGGGGGGGTAAGAAGGAAAGTAAGAAAAACGGGGTTTGGCCTAACCGGGAAAAGGGGTTAACCCAATTGGTTAACCGGAACATTAACCGGAAGACCGGCCGGAAGGGTTGGTTGGTTGGAATTCCAATTCCCCCCGGAAGGTTTTGGTCGAACCCTGGTCTTGGNGAACCGGGANACGGAAACAAATTCCGCCTGGGTAACCTGGGTTCGGAAGAAAAACTGGGAAACCTTCCTTCAATTCCCCTGGNCGACCAACAGGAAAACCCTGGGCTTCACCAAAAGCTTTTTCCAAGTTCCAATTCGTTGGGCANTTGTAAAACCGGGAAACTTAGCGAAAAGAACNCGACGGGGCACAAGGTATTAACACCTTGGGTTGGGCAACACCGGGGCGTTGTGAGAACCACTTAATTTCTTGGAATTTAGCACCAGACCGGAAAGAGAANACGGGTTNCTTCGGTGGGGAACCCCAATTACGCCCAAGGCAAAACANAAACAGGTTAGGNCCAAGGTATGGTTCTACAATATGNAACAAAACGTCGGNACGTGGGCCNGCCCCCTTGGTTGTGCATTAGGGGGGTATAAAGGGGCGCCCCTGGTGAATTGTGGCGTTTACTTACGTCTTGGACCGGCGCTTNTTCACCGCCGCGAGAAATTTAGG]
consensusID : consensus_5146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence
[AGATCGGCACAGGCATTGTACAGCATGACAAAATTGCTTGTATTTGCTGCTTGTGCTGCCTCTTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGATTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTTGCGAAGGTCAAACAGATGGAACTCTATTCCCCTCTAGTTAATTGCTCGAATTTTGTCAGTTGCGAGGGGGGTAGAGAAGTAGAAACGGGTTGCCTACCGGAAGGTACCATGTACGACTACGAACGCGAGGTGTGTGATCATCCCGAGTTTGTGACCTGCTGGACGGAAGAAAATCGCTGTACTGGTCGAGAAAATGGAACTCTCATCCCTGCCACGAACTGCTCCAACTTCATCATCTGCATGAACGAACTAGAAAACGAGGAAGTTACCTGTGCACCGGCTGGAACACTATTTGATTACCAGCGAGAAGTCTGTGACCATCCAGAAAACGTGCAGTGTTATGAAGGAGGCGCCTGTGCTGGTAGGCCCGATGGCTCTCTTGCGCCTTCCCGGAATTGTAGCAATTTCTTCCGTTGTGAAAATGAAGACATTGCCGGAAGAAAATCACATGCCAGCCTCAAGGAACATTATTCGACTGGCAGCCGGGAAGTGTGCGATCATCCAGAAGAAACGTGGAATGTGCTGAATCGGGTCCCAACAGGAAACAGTTACTGATGCGCCTCCGATGCCGAACTTCTGACCTACTCGT]
[+] EMBL BX466439 [AGATCGGCACAGGCATTGTACAGCATGACAAAATTGCTTGTATTTGCTGCTTGTGCTGCCTCTTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGATTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTTGCGAAGGTCAAACAGATGGAACTCTATTCCCCTCTAGTTAATTGCTCGAATTTTGTCAGTTGCGAGGGGGGTAGAGAAGTAGAAACGGGTTGCCTACCGGAAGGTACCATGTACGACTACGAACGCGAGGTGTGTGATCATCCCGAGTTTGTGACCTGCTGGACGGAAGAAAATCGCTGTACTGGTCGAGAAAATGGAACTCTCATCCCTGCCACGAACTGCTCCAACTTCATCATCTGCATGAACGAACTAGAAAACGAGGAAGTTACCTGTGCACCGGCTGGAACACTATTTGATTACCAGCGAGAAGTCTGTGACCATCCAGAAAACGTGCAGTGTTATGAAGGAGGCGCCTGTGCTGGTAGGCCCGATGGCTCTCTTGCGCCTTCCCGGAATTGTAGCAATTTCTTCCGTTGTGAAAATGAAGACATTGCCGGAAGAAAATCACATGCCAGCCTCAAGGAACATTATTCGACTGGCAGCCGGGAAGTGTGCGATCATCCAGAAGAAACGTGGAATGTGCTGAATCGGGTCCCAACAGGAAACAGTTACTGATGCGCCTCCGATGCCGAACTTCTGACCTACTCGT]
consensusID : consensus_5146#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[GGCAAGAATCGGCACGAGGAGGGCTCAAAAAGAAACATTGTACAGCATGACAAAATTGCTTGTATTTGCTGGCTTGTGCTGCCTCTTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGATTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTTGCGAAGGTCAAACAGATGGAACTCTATTCCCCTCTAGTAATTGCTCGAATTTTGTCAGTTGCGAGGGGGGTAGAGAAGTAGAAACGGGTTGCCTACCGGAAGGTACCATGTACGACTACGAACGCGAGGTGTGTGATCATCCCGAGTTTGTGACCTGCTGGACGGAAGAAAATCGCTGTACTGGTCGAGAAAATGGAACTCTCATCCCTGCCACGAACTGCTCCAACTTCATCATCTGCATGAACGAACTAGAAAACGAGGAAGTTACCTGTGCACCGGCTGGAACACTATTTGATTACCAGCGAGAAGTCTGTGACCATCCAGAAAACGTGCAGTGTTATGAAGGAGGCGCCTGTGCTGGTAGGCCCGATGGCTCTCTTGCGCCTTCCCGGAATTGTAGCAATTTCTTCCGTTGTGAAAATGAAGACATTGCCGAAGGAAATCACATGCCAGCCTCAAGGAACATTATTCGACTGGCAGCGGGAAGTGTGCGATCATCCAGAGAACGTGGAAT]
[+] EMBL BX468379 [GGCAAGAATCGGCACGAGGAGGGCTCAAAAAGAAACATTGTACAGCATGACAAAATTGCTTGTATTTGCTGGCTTGTGCTGCCTCTTAGGAGCTGGACTGGCTTCTTTCCAACGTCAAACAAAACTGATTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTTGCGAAGGTCAAACAGATGGAACTCTATTCCCCTCTAGTAATTGCTCGAATTTTGTCAGTTGCGAGGGGGGTAGAGAAGTAGAAACGGGTTGCCTACCGGAAGGTACCATGTACGACTACGAACGCGAGGTGTGTGATCATCCCGAGTTTGTGACCTGCTGGACGGAAGAAAATCGCTGTACTGGTCGAGAAAATGGAACTCTCATCCCTGCCACGAACTGCTCCAACTTCATCATCTGCATGAACGAACTAGAAAACGAGGAAGTTACCTGTGCACCGGCTGGAACACTATTTGATTACCAGCGAGAAGTCTGTGACCATCCAGAAAACGTGCAGTGTTATGAAGGAGGCGCCTGTGCTGGTAGGCCCGATGGCTCTCTTGCGCCTTCCCGGAATTGTAGCAATTTCTTCCGTTGTGAAAATGAAGACATTGCCGAAGGAAATCACATGCCAGCCTCAAGGAACATTATTCGACTGGCAGCGGGAAGTGTGCGATCATCCAGAGAACGTGGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5146#1 ----------------------AGATCGGCAC-AGGCATTG-TACAGCATGACAAAATTG 36
consensus_5146#2 -GGCAAGAATCGGCACGAGGAGGGCTCAAAAAGAAACATTG-TACAGCATGACAAAATTG 58
consensus_5146#0 CAGAATCGCCCCGCACG-GTTNANCTCAAAAAGAAACATTGGTACAGCATGACAAAATTG 59
** * * ***** ******************
consensus_5146#1 CTTGTATTTGCTG-CTTGTGCTGCCTCTT-AGGAGCTGGACTGGCTTCTTTCCAACGTCA 94
consensus_5146#2 CTTGTATTTGCTGGCTTGTGCTGCCTCTT-AGGAGCTGGACTGGCTTCTTTCCAACGTCA 117
consensus_5146#0 CTTGTATTTGCTGGCTTGTGCTGCCTCTTTAGGAGCTGGACTGGCTTCTTTCCAACGTCA 119
************* *************** ******************************
consensus_5146#1 AACAAAACTGA-TTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTT 153
consensus_5146#2 AACAAAACTGA-TTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTT 176
consensus_5146#0 AACAAAACTGAGTTCAGGGCAACTTTGTGCCACGCAATTCGTCAGCAGATAGAGGTCGTT 179
*********** ************************************************
consensus_5146#1 GC---GAAGGTCAAACAGAT-----GGAACTCTATTCCCCTC-----TAGTTAATT--GC 198
consensus_5146#2 GC---GAAGGTCAAACAGAT-----GGAACTCTATTCCCCTC-----TAGT-AATT--GC 220
consensus_5146#0 GCCGAAAGGGTCAAACAGGATTGGGGAAACTTAATTTTCCCCCTTCTTAATAAATTTGGC 239
** * ********** * **** *** ** * ** * **** **
consensus_5146#1 TCGAATTTTGTCAGTTGCGAGGGGGGTAGAGAAGTAGAAACGGGTTGCCTACCGGAAGGT 258
consensus_5146#2 TCGAATTTTGTCAGTTGCGAGGGGGGTAGAGAAGTAGAAACGGGTTGCCTACCGGAAGGT 280
consensus_5146#0 CGGAAAATTTTTTGGTTCCAGGTTGGCGGAGGGG-GGGGGTAAGAAGGAAAGTAAGAAAA 298
*** ** * * * * *** ** *** * * * * * *
consensus_5146#1 ACCATGTACGACTACGAACGCGAGGTGTGTGATCATCCCGAGTTTGTGACCTGCTGGACG 318
consensus_5146#2 ACCATGTACGACTACGAACGCGAGGTGTGTGATCATCCCGAGTTTGTGACCTGCTGGACG 340
consensus_5146#0 ACGGGGTTTGGC--CTAAC-CGGGAAAAGGGGTTAACCCAA-TTGGTTAACCGGAACATT 354
** ** * * * *** ** * * * * * *** * ** ** * * * *
consensus_5146#1 GA--AGAAAATCG-CTGTACTGGTCGAGAAAATGGAACTCTCATCCCTGCCACGAA---C 372
consensus_5146#2 GA--AGAAAATCG-CTGTACTGGTCGAGAAAATGGAACTCTCATCCCTGCCACGAA---C 394
consensus_5146#0 AACCGGAAGACCGGCCGGAAGGGTTGGTTGGTTGGAATTCCAATTCCCCCCGGAAGGTTT 414
* *** * ** * * * *** * ***** ** ** ** ** *
consensus_5146#1 TGCTCCAACTTCATCATCTGCATGAACGAACTAGAAAACGAGG-------AAGTTACCTG 425
consensus_5146#2 TGCTCCAACTTCATCATCTGCATGAACGAACTAGAAAACGAGG-------AAGTTACCTG 447
consensus_5146#0 TGGTCGAACCCTGGTCTTGGNGAACCGGGANACGGAAACAAATTCCGCCTGGGTAACCTG 474
** ** *** * * * * * **** * ** *****
consensus_5146#1 TGCACCGG-------CTGGAACACTATTT-------------GATTACCAGCGAGAAGTC 465
consensus_5146#2 TGCACCGG-------CTGGAACACTATTT-------------GATTACCAGCGAGAAGTC 487
consensus_5146#0 GGTTCGGAAGAAAAACTGGGAAACCTTCCTTCAATTCCCCTGGNCGACCAACAGGAAAAC 534
* * * **** * ** * * **** * *** *
consensus_5146#1 TGTGACCATCCAGAAAA---CGTGCAGTGTTATGA---AGGAGGCGCCTGTG---CTGGT 516
consensus_5146#2 TGTGACCATCCAGAAAA---CGTGCAGTGTTATGA---AGGAGGCGCCTGTG---CTGGT 538
consensus_5146#0 CCTGGGCTTCACCAAAAGCTTTTTCCAAGTTCCAATTCGTTGGGCANTTGTAAAACCGGG 594
** * ** **** * * *** * *** *** * **
consensus_5146#1 AGGCCCGATGGCTCTCTTGCGCCTTCCCGGAATTGTAGCAATTTCTTCCGTTGTGAAA-A 575
consensus_5146#2 AGGCCCGATGGCTCTCTTGCGCCTTCCCGGAATTGTAGCAATTTCTTCCGTTGTGAAA-A 597
consensus_5146#0 AAACTTAGCGAAAAGAACNCGACGGGGCACAAG-GTATTAACACCTTGGGTTGGGCAACA 653
* * * ** * * ** *** ** *** **** * ** *
consensus_5146#1 TGAAGACATTGCCGGAAGAA---AATCACATG----CCAGCCTCAA----GGAACATTAT 624
consensus_5146#2 TGAAGACATTGCCG-AAGGA---AATCACATG----CCAGCCTCAA----GGAACATTAT 645
consensus_5146#0 CCGGGGCGTTGTGAGAACCACTTAATTTCTTGGAATTTAGCACCAGACCGGAAAGAGAAN 713
* * *** ** * *** * ** *** ** * ** * *
consensus_5146#1 TCGACTGGC---AGCCGGGAAGTGTGCGATCATCCAGAAGAAACGTGGAATGTGCTGAAT 681
consensus_5146#2 TCGACTGGC---AGC-GGGAAGTGTGCGATCATCCAGAG--AACGTGGAAT--------- 690
consensus_5146#0 ACGGGTTNCTTCGGTGGGGAACCCCAATTACGCCCAAGGCAAAACANAAACAGGTTAGGN 773
** * * * ***** * *** ** **
consensus_5146#1 C--GGGTCCCAACAGGAAACAGTTACTGATGCGCCTCCGATGCCGAACTTCTGACCTACT 739
consensus_5146#2 ------------------------------------------------------------
consensus_5146#0 CCAAGGTATGGTTCTACAATATGNAACAAAACGTCGGN-ACGTGGGCCNGCCCCCTTGGT 832
consensus_5146#1 CGT--------------------------------------------------------- 742
consensus_5146#2 ------------------------------------------------------------
consensus_5146#0 TGTGCATTAGGGGGGTATAAAGGGGCGCCCCTGGTGAATTGTGGCGTTTACTTACGTCTT 892
consensus_5146#1 ------------------------------------
consensus_5146#2 ------------------------------------
consensus_5146#0 GGACCGGCGCTTNTTCACCGCCGCGAGAAATTTAGG 928
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||