cluster # 5150

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Anopheles gambiae
cluster # 5150 cluster # 5150 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5150#0 length = 720 sequences # 1

consensus_5150#1 length = 558 sequences # 1
consensus_5150#2 length = 439 sequences # 2

consensusID : consensus_5150#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 720
fasta sequence

                              [CAGAATCCCCCNAGGTTNGAAGCAGATGCCCGACGGCAGCATCGCTAGCGTCTGACGATGTGTTCCTGCTGAAGACGGCTGGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTCGATCTGGAGAAGGATATGTGCTGGCCAACATTGCCTGGTGTGTGTNTGCGCCCGACGTAAGTGCCGAAGTTGTTGCGGAAGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAACGGATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTTGACGCCTCGGCATGTNACCACCTGTCGCATTCTTGTACAACAAGGAAGCTGCCGCGTCGAGGAAAGTGCCACACTACGAGCAGGAGGCATCTCAACGTGGGNACGCATTGTTCGCATGCGTCACTTGGACATGGTGGCGACGCACANATCTAACTAGCTGGCATCGGTAAACGGTGCAACCCGAAGACGGAAACCGCACGCACACATGTCAGAATCCGATATTGGNGGTCCCGAACCAAAGATAACAATTTCCCAGAATAANCACCTGGAAATTACCCGGATACCCGGNAATCGGGGCTCCGGGACAAGGAGTGAAGAACCATGTGGTTCCCCCGGAAGTTCCGGTTGGNTAACCTTATNAAAANGACAAAGGAGGGGAAGTACNCATGTAAGGCCCGNCAAACAAAAGTGCCTTTACACNANGGACGNAACTTC]

[+] EMBL AL695582             [CAGAATCCCCCNAGGTTNGAAGCAGATGCCCGACGGCAGCATCGCTAGCGTCTGACGATGTGTTCCTGCTGAAGACGGCTGGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTCGATCTGGAGAAGGATATGTGCTGGCCAACATTGCCTGGTGTGTGTNTGCGCCCGACGTAAGTGCCGAAGTTGTTGCGGAAGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAACGGATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTTGACGCCTCGGCATGTNACCACCTGTCGCATTCTTGTACAACAAGGAAGCTGCCGCGTCGAGGAAAGTGCCACACTACGAGCAGGAGGCATCTCAACGTGGGNACGCATTGTTCGCATGCGTCACTTGGACATGGTGGCGACGCACANATCTAACTAGCTGGCATCGGTAAACGGTGCAACCCGAAGACGGAAACCGCACGCACACATGTCAGAATCCGATATTGGNGGTCCCGAACCAAAGATAACAATTTCCCAGAATAANCACCTGGAAATTACCCGGATACCCGGNAATCGGGGCTCCGGGACAAGGAGTGAAGAACCATGTGGTTCCCCCGGAAGTTCCGGTTGGNTAACCTTATNAAAANGACAAAGGAGGGGAAGTACNCATGTAAGGCCCGNCAAACAAAAGTGCCTTTACACNANGGACGNAACTTC]




>consensus_5150#0
CAGAATCCCCCNAGGTTNGAAGCAGATGCCCGACGGCAGCATCGCTAGCGTCTGACGATG
TGTTCCTGCTGAAGACGGCTGGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTCGATC
TGGAGAAGGATATGTGCTGGCCAACATTGCCTGGTGTGTGTNTGCGCCCGACGTAAGTGC
CGAAGTTGTTGCGGAAGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAACG
GATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTTGACGCCTCGGCATGT
NACCACCTGTCGCATTCTTGTACAACAAGGAAGCTGCCGCGTCGAGGAAAGTGCCACACT
ACGAGCAGGAGGCATCTCAACGTGGGNACGCATTGTTCGCATGCGTCACTTGGACATGGT
GGCGACGCACANATCTAACTAGCTGGCATCGGTAAACGGTGCAACCCGAAGACGGAAACC
GCACGCACACATGTCAGAATCCGATATTGGNGGTCCCGAACCAAAGATAACAATTTCCCA
GAATAANCACCTGGAAATTACCCGGATACCCGGNAATCGGGGCTCCGGGACAAGGAGTGA
AGAACCATGTGGTTCCCCCGGAAGTTCCGGTTGGNTAACCTTATNAAAANGACAAAGGAG
GGGAAGTACNCATGTAAGGCCCGNCAAACAAAAGTGCCTTTACACNANGGACGNAACTTC

consensusID : consensus_5150#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [CAGAATCGCCCGAGGTNTAAGTTGTTGCGGAAGAGTCGGAACGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAGGATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTGACGCCTCGGCTGTTCCACTGTCGCATTCTGTACAACAAGAAGCTGCGCGTCGAGGAAGTGCCACACTACGAGCAGGAGGATCTCAACGTGGACGATGTGATGGTACTGGATGGTGGCGACGAAATCTACTGCTGGATCGGTAACGGTGCAACCGAGGAGGAACGCAGCAAGTCGATCGATATGGCCCGCCAGTACATCCGTACCGATCCGTCCGAGCGGTCGGAGGAGACGGTCCCGATCGTTGTACTTAAGCAGGAGCCGAGCCGAAAAGCTTCAAGCGACTCTTCCCCACGTGGGACGATGCTTTCTGGGAGAACCAAATGTCATACGAAGCGTACCGGCAGCAGGCTTGGAGCAAAACCAGCATGCTGCGTTAGATACGCATCGACCATTTCATCCACTATCACGTGTCCATTTCGCCCGTCACGGTGTCATACTCG]

[+] EMBL AL694248             [CAGAATCGCCCGAGGTNTAAGTTGTTGCGGAAGAGTCGGAACGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAGGATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTGACGCCTCGGCTGTTCCACTGTCGCATTCTGTACAACAAGAAGCTGCGCGTCGAGGAAGTGCCACACTACGAGCAGGAGGATCTCAACGTGGACGATGTGATGGTACTGGATGGTGGCGACGAAATCTACTGCTGGATCGGTAACGGTGCAACCGAGGAGGAACGCAGCAAGTCGATCGATATGGCCCGCCAGTACATCCGTACCGATCCGTCCGAGCGGTCGGAGGAGACGGTCCCGATCGTTGTACTTAAGCAGGAGCCGAGCCGAAAAGCTTCAAGCGACTCTTCCCCACGTGGGACGATGCTTTCTGGGAGAACCAAATGTCATACGAAGCGTACCGGCAGCAGGCTTGGAGCAAAACCAGCATGCTGCGTTAGATACGCATCGACCATTTCATCCACTATCACGTGTCCATTTCGCCCGTCACGGTGTCATACTCG]




>consensus_5150#1
CAGAATCGCCCGAGGTNTAAGTTGTTGCGGAAGAGTCGGAACGGAGGAGTTCTGGGCAGC
GCTCGGTGGAAAGGATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTGAC
GCCTCGGCTGTTCCACTGTCGCATTCTGTACAACAAGAAGCTGCGCGTCGAGGAAGTGCC
ACACTACGAGCAGGAGGATCTCAACGTGGACGATGTGATGGTACTGGATGGTGGCGACGA
AATCTACTGCTGGATCGGTAACGGTGCAACCGAGGAGGAACGCAGCAAGTCGATCGATAT
GGCCCGCCAGTACATCCGTACCGATCCGTCCGAGCGGTCGGAGGAGACGGTCCCGATCGT
TGTACTTAAGCAGGAGCCGAGCCGAAAAGCTTCAAGCGACTCTTCCCCACGTGGGACGAT
GCTTTCTGGGAGAACCAAATGTCATACGAAGCGTACCGGCAGCAGGCTTGGAGCAAAACC
AGCATGCTGCGTTAGATACGCATCGACCATTTCATCCACTATCACGTGTCCATTTCGCCC
GTCACGGTGTCATACTCG

consensusID : consensus_5150#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 439
fasta sequence

                              [GAAGACGGCGGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTCCGAACTGGAGAAGGATATGGCGGCCAACATTGCCGGGGTGGTTGCGCCCGACGCAAGTGCCGAAGTTGTTGCGGAAGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAGGATGAGTACGAACGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTGACGCCCCGGCGGTTCCACTGTCGCATTCTGTACAACAAGAAGCTGCGCGTCGAGGAAGTGCCACACTTCGAGCAGGAGGAACTCAACGTGGACGAAGTGATGGTACTGGATGGTGGCGACGAGATCTACTGCTGGATCGGTAACGGTGCAACCGAGGAAGAACGCAGCAAGTCGAACGATATGGCCCGCCAGTACATCCGTACCGATCCGTCCGAGCGGTCGGAGGAGACG]

[+] EMBL BX608320             [GAAGACGGCGGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTCCGAACTGGAGAAGGATATGGCGGCCAACATTGCCGGGGTGGTTGCGCCCGACGCAAGTGCCGAAGTTGTTGCGGAAGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAGGATGAGTACGAACGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTGACGCCCCGGCGGTTCCACTGTCGCATTCTGTACAACAAGAAGCTGCGCGTCGAGGAAGTGCCACACTTCGAGCAGGAGGAACTCAACGTGGACGAAGTGATGGTACTGGATGGTGGCGACGAGATCTACTGCTGGATCGGTAACGGTGCAACCGAGGAAGAAC                                                                    ]
[+] EMBL BX612197             [                                                                                                                                                                                                                                                 AACAAGAAGCCGCGCGTCGAGGAAGTGCCACACTTCGAGCAGGAGGAACTCAACGTGGACGAAGTGATGGTACCGGATGGTGGCGACGAGATCCACCGCCGGATCGGTAACGGTGCAACCGAGGAAGAACGCAGCAAGTCGAACGATATGGCCCGCCAGTACATCCGTACCGATCCGTCCGAGCGGTCGGAGGAGACG]




>consensus_5150#2
GAAGACGGCGGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTCCGAACTGGAGAAGGA
TATGGCGGCCAACATTGCCGGGGTGGTTGCGCCCGACGCAAGTGCCGAAGTTGTTGCGGA
AGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAGGATGAGTACGAACGGGA
GCTGGATCCGGCTGGTGCTCCGTTCCTGACGCCCCGGCGGTTCCACTGTCGCATTCTGTA
CAACAAGAAGCTGCGCGTCGAGGAAGTGCCACACTTCGAGCAGGAGGAACTCAACGTGGA
CGAAGTGATGGTACTGGATGGTGGCGACGAGATCTACTGCTGGATCGGTAACGGTGCAAC
CGAGGAAGAACGCAGCAAGTCGAACGATATGGCCCGCCAGTACATCCGTACCGATCCGTC
CGAGCGGTCGGAGGAGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5150#0      CAGAATCCCCCNAGGTTNGAAGCAGATGCCCGACGGCAGCATCGCTAGCGTCTGACGATG 60
consensus_5150#2      ------------------------------------------------------------
consensus_5150#1      ------------------------------------------------------------
                                                                                  

consensus_5150#0      TGTTCCTGCTGAAGACGGCTGGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTC-GAT 119
consensus_5150#2      ----------GAAGACGGC-GGGCACCGTGTACATCTGGCACGGTGTCGGTGCGTCCGAA 49
consensus_5150#1      ------------------------------------------------------------
                                                                                  

consensus_5150#0      CTGGAGAAGGATATGTGCTGGCCAACATTGCCTGGTGTGTGTNTGCGCCCGACGTAAGTG 179
consensus_5150#2      CTGGAGAAGGATATGG--CGGCCAACATTGCCGGG---GTGGTTGCGCCCGACGCAAGTG 104
consensus_5150#1      ---------------------------------------CAGAATCGCCCGAGGTNT--- 18
                                                                   ******* *      

consensus_5150#0      CCGAAGTTGTTGCGGAAGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAAAC 239
consensus_5150#2      CCGAAGTTGTTGCGGAAGAGTCGGAACCGGAGGAGTTCTGGGCAGCGCTCGGTGGAAA-- 162
consensus_5150#1      ---AAGTTGTTGCGGAAGAGTCGGAAC-GGAGGAGTTCTGGGCAGCGCTCGGTGGAAA-- 72
                         ************************ ******************************  

consensus_5150#0      GGATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCTTGACGCCTCGGCATG 299
consensus_5150#2      GGATGAGTACGAACGGGAGCTGGATCCGGCTGGTGCTCCGTTCCT-GACGCCCCGGC--G 219
consensus_5150#1      GGATGAGTACGATCGGGAGCTGGATCCGGCTGGTGCTCCGTTCCT-GACGCCTCGGC-TG 130
                      ************ ******************************** ****** ****  *

consensus_5150#0      TNACCACCTGTCGCATTCTTGTACAACAAGGAAGCTGCCGCGTCGAGGAAAGTGCCACAC 359
consensus_5150#2      GTTCCAC-TGTCGCATTCT-GTACAACAAG-AAGCTGC-GCGTCGAGGAA-GTGCCACAC 274
consensus_5150#1      TT-CCAC-TGTCGCATTCT-GTACAACAAG-AAGCTGC-GCGTCGAGGAA-GTGCCACAC 184
                         **** *********** ********** ******* *********** *********

consensus_5150#0      TACGAGCAGGAGGCATCTCAACGTGGGNACGCATTGTTCGCATGCGTCACTTGGACATGG 419
consensus_5150#2      TTCGAGCAGGAGG-AACTCAACGTGG--ACGAAGTGATGGTAC--------TGGA--TGG 321
consensus_5150#1      TACGAGCAGGAGG-ATCTCAACGTGG--ACGATGTGATGGTAC--------TGGA--TGG 231
                      * *********** * **********  ***   ** * * *         ****  ***

consensus_5150#0      TGGCGACGCACANATCTAACTAGCTGGCATCGGTAAACGGTGCAACCCGAAGACGGAAAC 479
consensus_5150#2      TGGCGACG---AGATCTACT--GCTGG-ATCGGTAA-CGGTGCAACC-GAGGAAGAACGC 373
consensus_5150#1      TGGCGACG---AAATCTACT--GCTGG-ATCGGTAA-CGGTGCAACC-GAGGAGGAACGC 283
                      ********   * *****    ***** ******** ********** ** ** * *  *

consensus_5150#0      CGCACGCACA---------CATGTCAGAAT-CCGATATTGGNGGTCCCGAAC---CAAAG 526
consensus_5150#2      AGCAAGT-CG---------AACGATATGGC-CCGCCAGTACA---TCCGTAC---CGATC 416
consensus_5150#1      AGCAAGTCGATCGATATGGCCCGCCAGTACATCCGTACCGATCCGTCCGAGCGGTCGGAG 343
                       *** *                *  *      *   *         ***  *   *    

consensus_5150#0      ATAACAATTTC--CCAGAATAANCACCTGGAAATTACCCGGATACCCGGNAATCGGGGCT 584
consensus_5150#2      CGTCCGAGCGG--TCGGAGGAGACG----------------------------------- 439
consensus_5150#1      GAGACGGTCCCGATCGTTGTACTTAAGCAGGAGCCGAGCCGAAAAGCTTCAAGCGACTCT 403
                          *         *     *                                       

consensus_5150#0      CC-------GGGACAAGGAGT----GAAGAACCATGTGGTTCCCCCGGAAGTTCCGGTTG 633
consensus_5150#2      ------------------------------------------------------------
consensus_5150#1      TCCCCACGTGGGACGATGCTTTCTGGGAGAACCAAATG-TCATACGAAGCGTACCGGCAG 462
                                                                                  

consensus_5150#0      GNTAACCTTATNAAAANGACAAAGGAGGGGAAGTACNCATGTAAGGCCCGNCAAACAAAA 693
consensus_5150#2      ------------------------------------------------------------
consensus_5150#1      CAGGCTTGGAGCAAAACCAGCATGCTGCGTTAG-ATACGCATCGACCATTTCATCCACTA 521
                                                                                  

consensus_5150#0      GTGCCTTTACACNANGGACGNAACTTC---------- 720
consensus_5150#2      -------------------------------------
consensus_5150#1      TCACGTGTCCATTTCGCCCGTCACGGTGTCATACTCG 558