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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5151#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 554 fasta sequence
[CCGCGGACGCGTGGGTGACAGGATGATCGCCCCCAGTGCTGTAGTGCTACTTCTAGCAATTGCTTTAGTTCGCGTTGAAACGTTACGTTTGAATGCCTTTGATGTGATCAAAGACTGCAAACAGTTTAACACCGCCTTTGGATACAATGGTACATTGAATTACATCCCGATCAGCAGCTTTACTAATGCCGTCGATCAGAGGGAATTTAAGTAATACGTGTTTGGAGTGTTGGGACCGACTGGTGCAGTCATTCGGCTTTCCCATTCAGTGTATCCTTACGGCACGGAGGTGGTAGAAGTGGTACTGGGAGCCTATAACAACACGAAAACGATTGCCCGACATCAGCACCGCAAGTCGACGGGTGAGTTTGAAAACACCGACATCGTGAAGATGGCGACACCGAATCTGTTGTCCCCGTTTCGTCCTGTGATGTTAATGCTTAAAGTGTGGACGAACGGCAGGCGAGAAGTGTTGCACACCTGGTCAGCAGTTTCCTTTCATATCGTTTATGGACGCCCGAAACATCACGGTTAAATATATGGCCTTTACAAAG]
[+] EMBL BM589590 [CCGCGGACGCGTGGGTGACAGGATGATCGCCCCCAGTGCTGTAGTGCTACTTCTAGCAATTGCTTTAGTTCGCGTTGAAACGTTACGTTTGAATGCATTTGATGTGATCAAAGACTGCAAACAGTTTAACACCGCCTTTGGATACAATGGTACATTAAATTACATCCCGATCAGCAGCTTTACTCATGCCGTCGATCAGAGGGAATTTAAGTACTACGTGTTTGGAGTGTTGGGACCGACTGGTGCAGTCATTCGGCTTTCCCATTCAGTGTATCCTTACGGTACGGAGGTGCTAGAAGTGGTACTGGGAGCCTATAACAACACGAAAACGATTGCCCGACATCAGCACCGCAAGTCGACGGGTGAGTTTGAAAACACCGACATCGTGAAAATGGCGACACCGAATCTGTTGTCCCCGTTTCGACCTGTGATGTTAATGCTTAAAGTGTGGACGAACGGCAGGCGAGAAGTGTTGCACACCCGGTCAGCAGTTTCCTTTCATATCGTTTATGGACGCCCGAAACATCACGGTTAAATATATGGCCTTTACAAAG]
[+] EMBL BX619672 [ ACAGGATGATCGCCCCCAGTGCTGTAGTGCTACTTCTANCAATTGCTTTAGTTCGCGTTGAAACGTTACGTTTGAATGCCTTTGATGTGATCAAAGACTGCAAACAGTTTAACACCGCCTTTGGATACAATGGTACATTGAATTACATCCCGATCAGCAGCTTTACTAATGCCGTCGATCAGAGGGAATTTAAGTAATACGTGTTTGGAGTGTTGGGACCGACTGGTGCAGTCATTCGGCTTTCCCATTCAGTGTATCCTTACGGCACGGAGGTGGTAGAAGTGGTACTGGGAGCCTATAACAACACGAAAACGATTGCCCGACATCAGCACCGCAAGTCGACGGGTGAGTTTGAAAACACCGACATCGTGAAGATGGCGACACCGAATCTGTTGTCCCCGTTTCGTCCTGTGATGTTAATGCTTAAAGTGTGGACGAACGGCAGGCGAGAAGTGTTGCACCACTGGTCAGCAGTTTCCTTTCATATCGTTTATGGACGCCCG ]
[+] EMBL BX620681 [ GCCCCCAGTGCTGTAGTGCTACTTCTAGCAATTGCTTTAGTTCGCGTTGAAACGTTACGTTTGAATGCCTTTGATGTGATCAAAGACTGCAAACAGTTTAACACCGCCTTTGGATACAATGGTACATTGAATTACATCCCGATCAGCAGCTTTACTAATGCCGTCGATCAGAGGGAATTTAAGTAATACGTGTTTGGAGTGTTGGGACCGACTGGTGCAGTCATTCGGCTTTCCCATTCAGTGTATCCTTACGGCACGGAGGTGGTAGAAGTGGTACTGGGAGCCTATAACAACACGAAAACGATTGCCCGACATCAGCACCGCAAGTCGACGGGTGAGTTTGAAAACACCGACATCGTGAAGATGGCGACACCGAATCTGTTGTCCCCGTTTCGTCCTGTGATGTTAATGCTTAAAGTGTGGACGAACGGCAGGCGAGAAGTGTTGCACA CTGGTCAGCAGTTTCCTTTCATATCGTTTATGGACGCCCGAAACATCACG ]
consensusID : consensus_5151#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[GAATGCCCACGTTATATNGCCCAGTGCTGTACTGCTATTCTACATTTGCTTTATTCGCGTTGAAACGTTACGTTTGAATGCCTTTGATGGTAAGTGATTTANAAGTGACTTTCTCTGGAAATACATTTTTCGGAACGATTTCTCTCCTGTTTTTGTGTGTGCAGTGATCAAAGACTGNAACAGTTTAACACGCTTTGGATACAATGGTACATTGAATTAATCCCGATCAGCAGTTTACTAATGCCGTCGCATCACGAGGTGAATTTACACGTCACTACGTGTTCTGGACGTGTATGGGACCGACTGGTGCNAGTCATTCGGCTTTCCCATTCAGGTGTATCCTTACACGGCACGGAGTGGTAGGAGTGGTACTGGGGAGCCATATAACAACACGAAAACGATTGGCACCGACAATCAAGGACCCGNAAGAGCTCGACCGCGGTGANTTCNTGAAAAACACAGAACATCGGTGAACGAATGGCGAACAACCGGAATCTGGTTGGTCCCCGTATCGGTCACTGT]
[+] EMBL AL694274 [GAATGCCCACGTTATATNGCCCAGTGCTGTACTGCTATTCTACATTTGCTTTATTCGCGTTGAAACGTTACGTTTGAATGCCTTTGATGGTAAGTGATTTANAAGTGACTTTCTCTGGAAATACATTTTTCGGAACGATTTCTCTCCTGTTTTTGTGTGTGCAGTGATCAAAGACTGNAACAGTTTAACACGCTTTGGATACAATGGTACATTGAATTAATCCCGATCAGCAGTTTACTAATGCCGTCGCATCACGAGGTGAATTTACACGTCACTACGTGTTCTGGACGTGTATGGGACCGACTGGTGCNAGTCATTCGGCTTTCCCATTCAGGTGTATCCTTACACGGCACGGAGTGGTAGGAGTGGTACTGGGGAGCCATATAACAACACGAAAACGATTGGCACCGACAATCAAGGACCCGNAAGAGCTCGACCGCGGTGANTTCNTGAAAAACACAGAACATCGGTGAACGAATGGCGAACAACCGGAATCTGGTTGGTCCCCGTATCGGTCACTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5151#0 --------------------------------------------------------CCGC 4
consensus_5151#1 GAATGCCCACGTTATATNGCCCAGTGCTGTACTGCTATTCTACATTTGCTTTATTCGCGT 60
**
consensus_5151#0 GGACGCGT---GGGTGACAGGAT--GATCGCCCCCAGTGCTGTAGTG-CTACTTCTAGCA 58
consensus_5151#1 TGAAACGTTACGTTTGAATGCCTTTGATGGTAAGTGATTTANAAGTGACTTTCTCTGGAA 120
** *** * *** * * *** * * **** ** *** * *
consensus_5151#0 ATTGCTTTAGTTCGCGTTGAAACGTTACGTTTGAATGCCTTTGATGTGATCAAAGACTGC 118
consensus_5151#1 ATACATTT--TTCGGAACGATTTCTCTCCTGTTTTTGTGTGTGCAGTGATCAAAGACTGN 178
** *** **** ** * * * * ** * ** **************
consensus_5151#0 AAACAGTTTAACACCGCCTTTGGATACAATGGTACATTGAATTACATCCCGATCAGCAGC 178
consensus_5151#1 AA-CAGTTTAACACG--CTTTGGATACAATGGTACATTGAATTA-ATCCCGATCAGCAG- 233
** *********** *************************** **************
consensus_5151#0 TTTACTAATGCCGTCG-ATCA-GAGG-GAATTTAAGT---AATACGTGTTTGGAGTGT-- 230
consensus_5151#1 TTTACTAATGCCGTCGCATCACGAGGTGAATTTACACGTCACTACGTGTTCTGGACGTGT 293
**************** **** **** ******* * ******** * **
consensus_5151#0 -TGGGACCGACTGGTGCA-GTCATTCGGCTTTCCCATTCAG-TGTATCCTTAC--GGCAC 285
consensus_5151#1 ATGGGACCGACTGGTGCNAGTCATTCGGCTTTCCCATTCAGGTGTATCCTTACACGGCAC 353
**************** ********************** *********** *****
consensus_5151#0 GGAGGTGGTAGAAGTGGTACTGGG-AGCC-TATAACAACACGAAAACGATTGCCCGACAT 343
consensus_5151#1 GGAG-TGGTAGGAGTGGTACTGGGGAGCCATATAACAACACGAAAACGATTG----GCAC 408
**** ****** ************ **** ********************** **
consensus_5151#0 CAGCACCGCAAGTCGACGGGTGAGTTTGAAAACACCGACATCGTGAAGATGGCGACACCG 403
consensus_5151#1 CGACAAT-CAAGGACCCGNAAGAGCTCGACCGCGGTGANTTCNTGAAAA-----ACACAG 462
* ** **** ** *** * ** * ** ** **** * **** *
consensus_5151#0 AATCT-GTTGTCCCCGTTTCGTCC---TGTGATGTTAATGCTTAAAGTGTGGACGAACGG 459
consensus_5151#1 AACATCGGTGAACGAATGGCGAACAACCGGAATCTGGTTGGTCCCCGTATCGGTCACTGT 522
** * * ** * * ** * * ** * ** * ** * * * *
consensus_5151#0 CAGGCGAGAAGTGTTGCACACCTGGTCAGCAGTTTCCTTTCATATCGTTTATGGACGCCC 519
consensus_5151#1 ------------------------------------------------------------
consensus_5151#0 GAAACATCACGGTTAAATATATGGCCTTTACAAAG 554
consensus_5151#1 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||