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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 866 fasta sequence
[CCGGGTGTGTCGTTTACTCCCATTAACAAAGAAATGCTCACAATATATTAGCAAAAATCAAACCTCTACTGTATATATGCAGTGCAGTAGCAGCGGGTTATCATTAGGGCAGTGTTGAGGGAACTGTTTGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAATGTAGAAGAAGACAAAAAAAACCTAACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAATAGCTGTAATAACCCGCAGGACAATAGGCGAACTAAATGATTAAATTGCCATTTGAACCACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGCTCCCCATTCCTCCGCTGGCATCAGTATCAGAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGAAAAAAGAAACGGGCGTAACAGTTAATGGCGAA-TGTTTTCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAG-AAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTGTTTTTAACAAACGGTTTCTGACCATTTCACAACCAAACACACACACGAATCGGGCNGACCGTGTGTCNAATAACAAAACAGGCACATGCACACATTCAATAATCAGATCAAAAGAAACG]
[+] EMBL BM653368 [CCGGGTGTGTCGTTTACTCCCATTAACAAAGAAATGCTCACAATATATTAGCAAAAATCAAACCTCTACTGTATATATGCAGTGCAGTAGCAGCGGGTTATCATTAGGGCAGTGTTGAGGGAACTGTTTGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAATGTAGAAGAAGACAAAAAAAACCTAACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAATAGCTGTAATAACCCGCAGGACAATAGGCGAACTAAATGATTAAATTGCCATTTGAACCACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGCTCCCCATTCCTCCGCTGGCATCAGTATCAGAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGAAAAAAGAAACGGGCGTAACAGTTAATGGCGAA TGTTTTCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAG AAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGC ]
[+] EMBL AL694489 [ cccgaggttAAATCCGTGAAATCTCTAATCCCGCAAACGCGCTCCCCATTCCTCCGCTGGCATCAGTATCAGAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGAAAAAAGAAACGGGCGTAACAGTTAATGGCGAACTGTTTTCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGA CGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTGTTTTTAACAAACGGTTTCTGACCATTTCACAACCAAACACACACACGAATCGGGCNGACCGTGTGTCNAATAACAAAACAGGCACATGCACACATTCAATAATCAGATCAAAAGAAACG]
consensusID : consensus_5163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCATTATTAAGCTTACGGGCAGTGTTGGGGAAACTGTTCGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAAAGTAGAAGAAGACAAAAAAAAACCTTACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAATAGCTGTAATAACCCGCAGGACAATAGGCGAACTAAACGATTAAATTGCCATTTAAACCACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGTTCCCCCCTTCCTCCGCTGGCATCAGTATCACAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGGAAGAAAATAAACGGGCGGAACAGTTAATGGCGAATGTTTCCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCAAATTC]
[+] EMBL BM614913 [CCGCGGACGCGTGGGCGGACGCGTGGGCATTATTAAGCTTACGGGCAGTGTTGGGGAAACTGTTCGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAAAGTAGAAGAAGACAAAAAAAAACCTTACCATGCTACTACTACTAGTACTATTGCTACTTCTACTAATAGCTGTAATAACCCGCAGGACAATAGGCGAACTAAACGATTAAATTGCCATTTAAACCACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGTTCCCCCCTTCCTCCGCTGGCATCAGTATCACAAGTAAGCAAACATCACAACTACTTTTATCGTAATACATTAAATGGGCAGATGGAAGAAAATAAACGGGCGGAACAGTTAATGGCGAATGTTTCCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAATCCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTAGTAATGTTATAATCTTTAAGCGTAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAAATTCCAACAAGTGGATGTGAATGTGGAAAAAGCATTAAATGTTTCACTCAGCTAAGCGATAGTAAGCAAATTC]
consensusID : consensus_5163#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence
[GCAGATCGCCCCGAGGTTCACTCAGCTAAGCGATAGTAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTTGTTTTTAACAAACGGTTTCTTGACCATTTCACAACCAAACACACACACGAATCGGGCAGAGGTGTGGTCAAAATAAACAAAACAGGAATGAAATTAATAATCAGATCAAAGAAACGTTTTAAAACACGGCCATGTGTCGCCGCATGTTTCCGCAAATTCTCATCATTTTAAGCTCATCTTTACCACATCTTTCTAAAGGTGGGTAAAACGGACAGGAAGGAAACAAGTGGATAACGATGAANAATTGTGCAAACATTTTAGCAAACTCGATCAAAGAACAAAACACGAAACAAATCAAACATACACAGAGACAGACGCGCGTGCACACATGCAATGTCACAACAGTCANAGAAACAAAACAAAAGCAAAGCAACACACACAAAGCAACAACAGTCACCAAACATTGTGAGAAAAAGCTGTGACGATCACGGCTCACGAAAAGCAGGGCAGGGCANACAGGCAAAGGCAAAACAAAGCAANAAGCAAAAACAAGGCAAGGCATAGAAGGACAACAGCAA]
[+] EMBL AL930335 [GCAGATCGCCCCGAGGTTCACTCAGCTAAGCGATAGTAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTTGTTTTTAACAAACGGTTTCTTGACCATTTCACAACCAAACACACACACGAATCGGGCAGAGGTGTGGTCAAAATAAACAAAACAGGAATGAAATTAATAATCAGATCAAAGAAACGTTTTAAAACACGGCCATGTGTCGCCGCATGTTTCCGCAAATTCTCATCATTTTAAGCTCATCTTTACCACATCTTTCTAAAGGTGGGTAAAACGGACAGGAAGGAAACAAGTGGATAACGATGAANAATTGTGCAAACATTTTAGCAAACTCGATCAAAGAACAAAACACGAAACAAATCAAACATACACAGAGACAGACGCGCGTGCACACATGCAATGTCACAACAGTCANAGAAACAAAACAAAAGCAAAGCAACACACACAAAGCAACAACAGTCACCAAACATTGTGAGAAAAAGCTGTGACGATCACGGCTCACGAAAAGCAGGGCAGGGCANACAGGCAAAGGCAAAACAAAGCAANAAGCAAAAACAAGGCAAGGCATAGAAGGACAACAGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5163#0 CCGGGTGTGTCGTTTACTCCCATTAACAAAGAAATGCTCACAATATATTAGCAAAAATCA 60
consensus_5163#1 ------------------------------------------------------------
consensus_5163#2 ------------------------------------------------------------
consensus_5163#0 AACCTCTACTGTATATATGCAGTGCAGTAGCAGCGGGTTATCATTAGGGCAGTGTTGAGG 120
consensus_5163#1 --CCGCGGACGCGTGGGCGGA-CGCGTGGGCATTAT-TAAGCTTACGGGCAGTGTTGGGG 56
consensus_5163#2 ----------------------------------------------------------GC 2
*
consensus_5163#0 GAACTGTTTGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAATGTAG 180
consensus_5163#1 AAACTGTTCGAGGATCAATATAGACAACTCCGTCAGTTTTGTGTACAGAGAAAAAAGTAG 116
consensus_5163#2 AGATCGCCCCGAGGTTCACTCAGCTAAG--CGATAGTAGCGAATTCAGTAGCGAATGGTG 60
* * * * * ** ** ** *** * * *** ** * *
consensus_5163#0 AAGAAGACAAAAAAAA-CCTAACCATGCTACTACTACTAGTACTATTGCTACTTCTACTA 239
consensus_5163#1 AAGAAGACAAAAAAAAACCTTACCATGCTACTACTACTAGTACTATTGCTACTTCTACTA 176
consensus_5163#2 GTGAATATGCAGTTTGTTTTTAACAAACGGTTTCT----------TGACCATTTC-ACAA 109
*** * * * * ** * * ** * * * *** ** *
consensus_5163#0 ATAGCTGTAATAACCCGCAGGACAATAG-GCGAACTAAATGATTAAATTGCCATTTGAAC 298
consensus_5163#1 ATAGCTGTAATAACCCGCAGGACAATAG-GCGAACTAAACGATTAAATTGCCATTTAAAC 235
consensus_5163#2 CCAAACACACACACGAATCGGGCAGAGGTGTGGTCAAAATAAACAAAACAGGAATGAAAT 169
* * ** ** ** * * * * *** * *** * * **
consensus_5163#0 CACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGCTCCC 358
consensus_5163#1 CACATGATCAAAACATTTAAAAGAAATCCGTGAAATCTCTAATCCCGCAAACGCGTTCCC 295
consensus_5163#2 TA-ATAATCAGATCA-----AAGAAAC-------GTTTTAAAACACGGCCATGTGTCGCC 216
* ** **** * ** ****** * * ** * ** * * * **
consensus_5163#0 CA-TTCCTCCGCTGGCATCAGTATCAGAAGTAAGCAAACATCACAACTACTTTTATCGTA 417
consensus_5163#1 CCCTTCCTCCGCTGGCATCAGTATCACAAGTAAGCAAACATCACAACTACTTTTATCGTA 355
consensus_5163#2 GCATGTTTCCGCAA--ATTCTCATCATTTTAAGCTCATCTTTACCAC-ATCTTTCTAAAG 273
* ***** ** **** * * * * ** ** * *** *
consensus_5163#0 ATACATTAAATGGGCAG-ATGAAAAAAGA--AACGGGCGTAACAGTTAATGGCGAATGTT 474
consensus_5163#1 ATACATTAAATGGGCAG-ATGGAAGAAAATAAACGGGCGGAACAGTTAATGGCGAATGTT 414
consensus_5163#2 GTGGGTAAAACGGACAGGAAGGAAACAAGTGGATAACGATGAANAATTGTG-CAAACATT 332
* * *** ** *** * * ** * * * * ** * ** **
consensus_5163#0 TTCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAAT 534
consensus_5163#1 TCCCGGCCCATGGCCGGTAACGGAGACTCACTCCGCGACCGCGACGGGTGGTATAAGAAT 474
consensus_5163#2 TTAGCAAACTCGATCAAAGAACAAAACACGAAACAAATCAAACATACACAGAGACAGACG 392
* * * * * * ** * * * * * ***
consensus_5163#0 CCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTA-GTAATGTT 593
consensus_5163#1 CCTTTAAAACTGATCTTGCCATTTCGTTGTGAATCAAATGAACTGTGTGTA-GTAATGTT 533
consensus_5163#2 CGCGTGCACACA----TGCAATGTCACAAC-AGTCANAGAAACAAAACAAAAGCAAAGCA 447
* * * *** ** ** * *** * *** * * ** *
consensus_5163#0 ATAATCTTTAAGCG-TAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAA-TTCCA 651
consensus_5163#1 ATAATCTTTAAGCG-TAGCAGAAAACGAAGAAACGGTAGAAGGAAGTGAAGAAAATTCCA 592
consensus_5163#2 ACACACACAAAGCAACAACAGTCACCAAAC--ATTGTGAGAAAAAGCTGTGACGATCACG 505
* * * **** * *** * * ** * ** * *** ** * *
consensus_5163#0 ACAAGTGGATGTGAATGTGGAAAAAGCAT-TAAATGTTTCACTCAGC--TAAGCGATAGT 708
consensus_5163#1 ACAAGTGGATGTGAATGTGGAAAAAGCAT-TAAATGTTTCACTCAGC--TAAGCGATAGT 649
consensus_5163#2 GCTCACGAAAAGCAGGGCAGGGCANACAGGCAAAGGCAAAACAAAGCAANAAGCAAAAAC 565
* * * * * * * ** *** * ** *** **** * *
consensus_5163#0 AAGCGAATTCAGTAGCGAATGGTGGTGAATATGCAGTTGTTTTTAACAAACGGTTTCTGA 768
consensus_5163#1 AAGCAAATTC-------------------------------------------------- 659
consensus_5163#2 AAGGCAAGGCATAGAAGGACAACAGCAA-------------------------------- 593
*** ** *
consensus_5163#0 CCATTTCACAACCAAACACACACACGAATCGGGCNGACCGTGTGTCNAATAACAAAACAG 828
consensus_5163#1 ------------------------------------------------------------
consensus_5163#2 ------------------------------------------------------------
consensus_5163#0 GCACATGCACACATTCAATAATCAGATCAAAAGAAACG 866
consensus_5163#1 --------------------------------------
consensus_5163#2 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||