cluster # 5168

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Anopheles gambiae
cluster # 5168 cluster # 5168 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5168#0 length = 702 sequences # 2

consensus_5168#1 length = 681 sequences # 1
consensus_5168#2 length = 606 sequences # 1

consensusID : consensus_5168#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 702
fasta sequence

                              [CCTACTGGGTCACCGCCAGCCGGCTTAAAATTGTTCAGCAGCATAGAAAATTGATAGCGCTGTTATCTAGCAGCGTCCCTCAAGCATCCCAATATAGCGACAAGTGGACAATACACTGTCTCTATTGCTATCGGTACGCAGCGATCACAGGGCCACGGGTTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCATTCATGAAAGACTTCAACGGAAACGGCGGTGCGATCAATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGAGCTGGTGTGGTGACTGCGTCGATGCGGCACCATACATTGAGAAAGCGATCGAAACGGACGCTCCGGAGAATTCGCATTTCGTCTACGTCGATGTGGGCGATCGTCCAACCTGGAAGGATATGAACAATCCTTTCCGCAAGGACACTAACACGCATCTGTCCGTCATTCCGACCATGATCCGGTGGAAGCAGCCGCAGCGCCTCGAAGGCGAACAGTGCGGCAAGGCCGATCTGCTGGAACTGTTCTTTTCGGAAGACGACTAAAGCGATATCGCGAAACGGGAATGACGATCGATGTGGATTCTCTCTCTCTCGTGTTAAAATATGTATATTTTGTTCGCAATAAAATCGCACTCTTTTTACAGGGTTAAAAAAAAAAAAAAAAAAG]

[+] EMBL CNS091YJ             [CCTACTGGGTCACCGCCAGCCGGCTTAAAATTGTTCAGCAGCATAGAAAATTGATAGCGCTGTTATCTAGCAGCGTCCCTCAAGCATCCCAATATAGCGACAAGTGGACAATACACTGTCTCTATTGCTATCGGTACGCAGCGATCACAGGGCCACGGGTTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCATTCATGAAAGACTTCAACGGAAACGGCGGTGCGATCAATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGAGCTGGTGTGGTGACTGCGTCGATGCGGCACCATACATTGAGAAAGCGATCGAAACGGACGCTCCGGAGAATTCGCATTTCGTCTACGTCGATGTGGGCGATCGTCCAACCTGGAAGGATATGAACAATCCTTTCCGCAAGGACACTAACACGCATCTGTCCGTCATTCCGACCATGATCCGGTGGAAGCAGCCGCAGCGCCTCGAAGGCGAACAGTGCGGCAAGGCCGATCTGCTGGAACTGTTCTTTTCGGAAGACGACTAAAGCGATATCGCGAAACGGGAATGACGATCGATGTGGATTCTCTCTCTCTCGTGTTAAAATATGTATATTTTGTTCGCAATAAAATCGCACTCTTTTTACAGGGTTAAAAAAAAAAAAAAAA   ]
[-] EMBL CNS09RWC             [                                                                                                                                                                                                                                                                CGGAACCGGCGGTGCGGTCAATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGAGCTGGTGTGGTGACTGCGTCGATGCGGCACCATACATTGAGAAAGCGATCGAAACGAACGCTCCGGAGAATTCGCATTTCATCTACGTCGATGTGGGCGATCGTCCAACCTGGAAGGATATGAACAATCCTTTCCGCAAGGACACTAACACGCATCTGTCCGTCATTCCGACCATGATCCGGTGGAAGCAGCCGCAGCGCCTCGAAGGTGAACAGTGCGGCAAGGCCGATCTGTTGGAACTGTTCTTTTCGGAAGACGACTAAAGCGATATCGCGAAACGGGAATGACGATCGTTGTGGAT      TCTCTCGTGTTAAAATATGTATATTTTGTTCGCAATAAAATCGCGCTCTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAG]




>consensus_5168#0
CCTACTGGGTCACCGCCAGCCGGCTTAAAATTGTTCAGCAGCATAGAAAATTGATAGCGC
TGTTATCTAGCAGCGTCCCTCAAGCATCCCAATATAGCGACAAGTGGACAATACACTGTC
TCTATTGCTATCGGTACGCAGCGATCACAGGGCCACGGGTTTTGTTCAGAGCACTGTTAT
AATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCAT
TCATGAAAGACTTCAACGGAAACGGCGGTGCGATCAATATTCTCTTCACCGGCGCAAAGC
TCGAGAATGGTTTGAGCTGGTGTGGTGACTGCGTCGATGCGGCACCATACATTGAGAAAG
CGATCGAAACGGACGCTCCGGAGAATTCGCATTTCGTCTACGTCGATGTGGGCGATCGTC
CAACCTGGAAGGATATGAACAATCCTTTCCGCAAGGACACTAACACGCATCTGTCCGTCA
TTCCGACCATGATCCGGTGGAAGCAGCCGCAGCGCCTCGAAGGCGAACAGTGCGGCAAGG
CCGATCTGCTGGAACTGTTCTTTTCGGAAGACGACTAAAGCGATATCGCGAAACGGGAAT
GACGATCGATGTGGATTCTCTCTCTCTCGTGTTAAAATATGTATATTTTGTTCGCAATAA
AATCGCACTCTTTTTACAGGGTTAAAAAAAAAAAAAAAAAAG

consensusID : consensus_5168#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [CAGATCCCGAGGTTATAGCGCTGTTATCTAGCAGCGTCCTCAAGCATCCCAATATAGCGACAAGTGGACAATACACTGTCTCCATTGCTATCTGGTACGCAGCGATCACAGTGTCACGGGTTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCATTTATGAAAGACTTCAACGGAAACGGCGGTGCCGATCCNNATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGANCTGGTGTGGCCGACTGTGTCGGATGCGGCACCATTCATTGCAGCAAGGCGATCGAAACGAACAGCTCCGGCAGCAATTCGCATTTTCATCTACGTACGATGTGGGCGATCGTCCAACCTGGNAGNGATATTGACACAATCCTTTCCGCCAAGGCACACTAACACGCATCTGTCCGTACATATCCAGACATGATCCGGATGGAAGCAGCCGCAGACGCCTCGAAGGTGCAACAGATGTGGCAAGGCGACCTGCTGGAACTGTACTNCNTCGGAANGACGACCTACAAGCGATATGGCCGAAACGGGAATGACGATCGTGGTTGGNATTCTCTACTCTCGTGTACAAATATGTCATATNAGACGCAATAAAATCGCACTCTTATACAGGGTTCGGCGCGCAAA]

[+] EMBL AL694650             [CAGATCCCGAGGTTATAGCGCTGTTATCTAGCAGCGTCCTCAAGCATCCCAATATAGCGACAAGTGGACAATACACTGTCTCCATTGCTATCTGGTACGCAGCGATCACAGTGTCACGGGTTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCATTTATGAAAGACTTCAACGGAAACGGCGGTGCCGATCCNNATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGANCTGGTGTGGCCGACTGTGTCGGATGCGGCACCATTCATTGCAGCAAGGCGATCGAAACGAACAGCTCCGGCAGCAATTCGCATTTTCATCTACGTACGATGTGGGCGATCGTCCAACCTGGNAGNGATATTGACACAATCCTTTCCGCCAAGGCACACTAACACGCATCTGTCCGTACATATCCAGACATGATCCGGATGGAAGCAGCCGCAGACGCCTCGAAGGTGCAACAGATGTGGCAAGGCGACCTGCTGGAACTGTACTNCNTCGGAANGACGACCTACAAGCGATATGGCCGAAACGGGAATGACGATCGTGGTTGGNATTCTCTACTCTCGTGTACAAATATGTCATATNAGACGCAATAAAATCGCACTCTTATACAGGGTTCGGCGCGCAAA]




>consensus_5168#1
CAGATCCCGAGGTTATAGCGCTGTTATCTAGCAGCGTCCTCAAGCATCCCAATATAGCGA
CAAGTGGACAATACACTGTCTCCATTGCTATCTGGTACGCAGCGATCACAGTGTCACGGG
TTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCG
GATACGATGCATTCGTTGCATTTATGAAAGACTTCAACGGAAACGGCGGTGCCGATCCNN
ATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGANCTGGTGTGGCCGACTGTGTC
GGATGCGGCACCATTCATTGCAGCAAGGCGATCGAAACGAACAGCTCCGGCAGCAATTCG
CATTTTCATCTACGTACGATGTGGGCGATCGTCCAACCTGGNAGNGATATTGACACAATC
CTTTCCGCCAAGGCACACTAACACGCATCTGTCCGTACATATCCAGACATGATCCGGATG
GAAGCAGCCGCAGACGCCTCGAAGGTGCAACAGATGTGGCAAGGCGACCTGCTGGAACTG
TACTNCNTCGGAANGACGACCTACAAGCGATATGGCCGAAACGGGAATGACGATCGTGGT
TGGNATTCTCTACTCTCGTGTACAAATATGTCATATNAGACGCAATAAAATCGCACTCTT
ATACAGGGTTCGGCGCGCAAA

consensusID : consensus_5168#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 606
fasta sequence

                              [GCTCTACTGGAGAAAATTGATAGCGCTGTTATCTAGCAGCGTCCCTCAAGCATTCCAATATAGCGACAAGTGGACAATACACTGTCTCCATTGCTATCGGTACGCAGCGATCACAGGGTCACGGGTTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCATTTATGAAAGACTTCAACGGAAACGGCGGTGCGATCAATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGAGCTGGTGTGGTGACTGCGTCGATGCGGCACCATACATTGAGAAAGCGATCGAAACGAACGCTCCGGAGAATTCGCATTTCATCTACGTCGATGTGGGCGATCGTCCAACCTGGAAGGATATGAACAATCCTTTCCGCAAGGACACTAACACGCATCTGTCCGTCATTCCGACCATGATCCGGTGGAAGCAGCCGCAGCGCCTCGAAGGTGAACAGTGCGGCAAGGCCGATCTGTTGGAACTGTTCTTTTCGGAAGACGACTAAAGCGATATCGCGAAACGGGAATGACGATCGTTGTGGATTCTCTCGGGTTAAAATATGTATAT]

[+] EMBL CNS09RWB             [GCTCTACTGGAGAAAATTGATAGCGCTGTTATCTAGCAGCGTCCCTCAAGCATTCCAATATAGCGACAAGTGGACAATACACTGTCTCCATTGCTATCGGTACGCAGCGATCACAGGGTCACGGGTTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCATTTATGAAAGACTTCAACGGAAACGGCGGTGCGATCAATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGAGCTGGTGTGGTGACTGCGTCGATGCGGCACCATACATTGAGAAAGCGATCGAAACGAACGCTCCGGAGAATTCGCATTTCATCTACGTCGATGTGGGCGATCGTCCAACCTGGAAGGATATGAACAATCCTTTCCGCAAGGACACTAACACGCATCTGTCCGTCATTCCGACCATGATCCGGTGGAAGCAGCCGCAGCGCCTCGAAGGTGAACAGTGCGGCAAGGCCGATCTGTTGGAACTGTTCTTTTCGGAAGACGACTAAAGCGATATCGCGAAACGGGAATGACGATCGTTGTGGATTCTCTCGGGTTAAAATATGTATAT]




>consensus_5168#2
GCTCTACTGGAGAAAATTGATAGCGCTGTTATCTAGCAGCGTCCCTCAAGCATTCCAATA
TAGCGACAAGTGGACAATACACTGTCTCCATTGCTATCGGTACGCAGCGATCACAGGGTC
ACGGGTTTTGTTCAGAGCACTGTTATAATAGCCGTTCATCATGGTGCATAAACATCATGT
CGCCGGATACGATGCATTCGTTGCATTTATGAAAGACTTCAACGGAAACGGCGGTGCGAT
CAATATTCTCTTCACCGGCGCAAAGCTCGAGAATGGTTTGAGCTGGTGTGGTGACTGCGT
CGATGCGGCACCATACATTGAGAAAGCGATCGAAACGAACGCTCCGGAGAATTCGCATTT
CATCTACGTCGATGTGGGCGATCGTCCAACCTGGAAGGATATGAACAATCCTTTCCGCAA
GGACACTAACACGCATCTGTCCGTCATTCCGACCATGATCCGGTGGAAGCAGCCGCAGCG
CCTCGAAGGTGAACAGTGCGGCAAGGCCGATCTGTTGGAACTGTTCTTTTCGGAAGACGA
CTAAAGCGATATCGCGAAACGGGAATGACGATCGTTGTGGATTCTCTCGGGTTAAAATAT
GTATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5168#0      CCTACTGGGTCACCGCCAGCCGGCTTAAAATTGTTCAGCAGCATAGAAAATTGATAGCGC 60
consensus_5168#2      --------------------------------GCTCTACTGGA--GAAAATTGATAGCGC 26
consensus_5168#1      --------------------------------------CAGATCCCGAGGTT-ATAGCGC 21
                                                            * *      *  ** *******

consensus_5168#0      TGTTATCTAGCAGCGTCCCTCAAGCATCCCAATATAGCGACAAGTGGACAATACACTGTC 120
consensus_5168#2      TGTTATCTAGCAGCGTCCCTCAAGCATTCCAATATAGCGACAAGTGGACAATACACTGTC 86
consensus_5168#1      TGTTATCTAGCAGCGTCC-TCAAGCATCCCAATATAGCGACAAGTGGACAATACACTGTC 80
                      ****************** ******** ********************************

consensus_5168#0      TCTATTGCTATC-GGTACGCAGCGATCACAGGGCCACGGGTTTTGTTCAGAGCACTGTTA 179
consensus_5168#2      TCCATTGCTATC-GGTACGCAGCGATCACAGGGTCACGGGTTTTGTTCAGAGCACTGTTA 145
consensus_5168#1      TCCATTGCTATCTGGTACGCAGCGATCACAGTGTCACGGGTTTTGTTCAGAGCACTGTTA 140
                      ** ********* ****************** * **************************

consensus_5168#0      TAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCA 239
consensus_5168#2      TAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCA 205
consensus_5168#1      TAATAGCCGTTCATCATGGTGCATAAACATCATGTCGCCGGATACGATGCATTCGTTGCA 200
                      ************************************************************

consensus_5168#0      TTCATGAAAGACTTCAACGGAAACGGCGGTGC-GATC--AATATTCTCTTCACCGGCGCA 296
consensus_5168#2      TTTATGAAAGACTTCAACGGAAACGGCGGTGC-GATC--AATATTCTCTTCACCGGCGCA 262
consensus_5168#1      TTTATGAAAGACTTCAACGGAAACGGCGGTGCCGATCCNNATATTCTCTTCACCGGCGCA 260
                      ** ***************************** ****   ********************

consensus_5168#0      AAGCTCGAGAATGGTTTGAGCTGGTGTGGT-GACTGCGTCG-ATGCGGCACCATACATTG 354
consensus_5168#2      AAGCTCGAGAATGGTTTGAGCTGGTGTGGT-GACTGCGTCG-ATGCGGCACCATACATTG 320
consensus_5168#1      AAGCTCGAGAATGGTTTGANCTGGTGTGGCCGACTGTGTCGGATGCGGCACCATTCATTG 320
                      ******************* *********  ***** **** ************ *****

consensus_5168#0      AG--AAAGCGATCGAAACGGAC-GCTCCGGAG--AATTCGCATTT-CGTCTACGT-CGAT 407
consensus_5168#2      AG--AAAGCGATCGAAACGAAC-GCTCCGGAG--AATTCGCATTT-CATCTACGT-CGAT 373
consensus_5168#1      CAGCAAGGCGATCGAAACGAACAGCTCCGGCAGCAATTCGCATTTTCATCTACGTACGAT 380
                          ** ************ ** *******    *********** * ******* ****

consensus_5168#0      GTGGGCGATCGTCCAACCTGGAAGG-ATATGAACA--ATCCTTTCCGCAAGG--ACACTA 462
consensus_5168#2      GTGGGCGATCGTCCAACCTGGAAGG-ATATGAACA--ATCCTTTCCGCAAGG--ACACTA 428
consensus_5168#1      GTGGGCGATCGTCCAACCTGGNAGNGATATTGACACAATCCTTTCCGCCAAGGCACACTA 440
                      ********************* **  ****  ***  *********** * *  ******

consensus_5168#0      ACACGCATCTGTCCGT-CAT-TCCGACCATGATCCGG-TGGAAGCAGCCGCAG-CGCCTC 518
consensus_5168#2      ACACGCATCTGTCCGT-CAT-TCCGACCATGATCCGG-TGGAAGCAGCCGCAG-CGCCTC 484
consensus_5168#1      ACACGCATCTGTCCGTACATATCCAGACATGATCCGGATGGAAGCAGCCGCAGACGCCTC 500
                      **************** *** ***   ********** *************** ******

consensus_5168#0      GAAGGCG-AACAG-TGCGGCAAGGCCGATCTGCTGGAACTGTTCTTTTC--GGAAGACGA 574
consensus_5168#2      GAAGGTG-AACAG-TGCGGCAAGGCCGATCTGTTGGAACTGTTCTTTTC--GGAAGACGA 540
consensus_5168#1      GAAGGTGCAACAGATGTGGCAAGGC-GACCTGCTGGAACTGTACTNCNTCGGAANGACGA 559
                      ***** * ***** ** ******** ** *** ********* **      * * *****

consensus_5168#0      CTAA--AGCGATATCGC-GAAACGGGAATGACGATCGATGTGGATTCTCTCT-CTCTCGT 630
consensus_5168#2      CTAA--AGCGATATCGC-GAAACGGGAATGACGATCGTTGTGGATTCT-------CTCGG 590
consensus_5168#1      CCTACAAGCGATATGGCCGAAACGGGAATGACGATCGTGGTTGGNATTCTCTACTCTCGT 619
                      *  *  ******** ** *******************  ** *    *       **** 

consensus_5168#0      GTTAAAATATGTATATTTTGTTCGCAATAAAATCGCACTCTTTTTACAGGGTTAAAAAAA 690
consensus_5168#2      GTTAAAATATGTATAT-------------------------------------------- 606
consensus_5168#1      GTACAAATATGT-CATATNAGACGCAATAAAATCGCACTCTTAT-ACAGGGTTCGGCGCG 677
                      **  ********  **                                            

consensus_5168#0      AAAAAAAAAAAG 702
consensus_5168#2      ------------
consensus_5168#1      CAAA-------- 681