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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 933 fasta sequence
[AATCGCCCGAGGNNGAATGTATGAGTAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGGTGTAAAGTGCCACGTGCTCAGTAAATTAGAATTTTAACCGTTTGTGTTGAGGATGAAATAAAACTCAAAACAGAAAAGAAGAAAAAACAACCTATCCGTAATCCCATTATCTATCTGCTCATGTGACGCGAAGACACATGAGTATGCGAGGTGAATTGGGATAAGACTTTCTTAATAATTACTATTTAGCAAACGAATCACATAACACAACCGCTCTACACAGAGAGAATGACACAAAGACGCTGTGGAAGAGCAGTGGAAAATAACGATTCTAAAATAACAGTACCCAAAAGCTCTATTCTACACACACACGTACGATCTTTTTATCCTTCTCAACGCGTTGAACGTAGATGGTGGAAGACGATAAGTGTGACGAGGCAGTACAACACATATATACACATATGCAGTACAGAGAAAAAGAGAAAAGGTGAAAAGAGCCGATAAAGAGAAGAAACATTTTCGATTGGAAAGTTGGAAACAAATGTAACAAAAACAAAAAAAAATTGCATAAGAGAAGCAGTTGGGAAAATACAAACACACACACACATGTAGAAGAGTAAAACTGGTGTAATGTACAACAGCTAACATACTTTTCAGTGTGGAATTTTCTCCTCCTCCTGTTGCGTGAAGTTGCAGTTGCGCCGGAGATTGCATTTATTCGTATAAATTCATGTACCTTACTGTGTGTGTGTAAATGTATGTGTGCGTGTGTGAGTGTGTACTGGTATTTCAAATTTGCCAATTCTCAAATTTTGTGCACGGTTTGCCCCTGATCATCATCATTCTTCTTCACTCGTACTATTATTCTTGATGAAAGGTTGATGAAGGTAAAAACGATCGTCATCAAAGCTATGATCTA]
[+] EMBL AL932871 [AATCGCCCGAGGNNGAATGTATGAGTAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGGTGTAAAGTGCCACGTGCTCAGTAAATTAGAATTTTAACCGTTTGTGTTGAGGATGAAATAAAACTCAAAACAGAAAAGAAGAAAAAACAACCTATCCGTAATCCCATTATCTATCTGCTCATGTGACGCGAAGACACATGAGTATGCGAGGTGAATTGGGATAAGACTTTCTTAATAATTACTATTTAGCAAACGAATCACATAACACAACCGCTCTACACAGAGAGAATGACACAAAGACGCTGTGGAAGAGCAGTGGAAAATAACGATTCTAAAATAACAGTACCCAAAAGCTCTATTCTACACACACACGTACGATCTTTTTATCCTTCTCAACGCGTTGAACGTAGATGGTGGAAGACGATAAGTGTGACGAGGCAGTACAACACATATATACACATATGCAGTACAGAGAAAAAGAGAAAAGGTGAAAAGAGCCGATAAAGAGAAGAAACATTTTCG ]
[+] EMBL BX617210 [ GGTGGAAGACGATAACTGTGACGAGGCAGTAACACACATATATACACATATGCAGTACAGAGAAAAAGAGAAAAGGTGAAAAGAGCCGATAAAGAGAAGAAACATTTTCGATTGGAAAGTTGGAAACAAATGTAACAAAAACAAAAAAAAATTGCATAAGAGAAGCAGTTGGGAAAATACAAACACACACACACATGTAGAAGAGTAAAACTGGTGTAATGTACAACAGCTAACATACTTTTCAGTGTGGAATTTTCTCCTCCTCCTGTTGCGTGAAGTTGCAGTTGCGCCGGAGATTGCATTTATTCGTATAAATTCATGTACCTTACTGTGTGTGTGTAAATGTATGTGTGCGTGTGTGAGTGTGTACTGGTATTTCAAATTTGCCAATTCTCAAATTTTGTGCACGGTTTGCCCCTGATCATCATCATTCTTCTTCACTCGTACTATTATTCTTGATGAAAGGTTGATGAAGGTAAAAACGATCGTCATCAAAGCTATGATCTA]
consensusID : consensus_5170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence
[GCCCGAGTTAAAGTCCTTTGGGTGTTTGCATCGAAGGGGCGGGTTGAACGTTTAAACTCTGTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCATCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATGTTTAGTTTTNGTTTTCCGTTGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTTGCAGCGATGATAAACGTTTCTTCTTTTTTTTTTTTAACAAAAACCACCCCGTTTAGCCCGAATCTCGCGAGTATAGGTTATTGTTTCGTGATTTTATTTTACTTGCTCGAAAATGCATACTTTTAATGATCGGAAGAAGAAGAAAATATTCTTTTAGTTAATTTAGGATGTTTTAGGAAAAAAAAGAAGAGAAAAGAAAACACCACAATGCGATGCATTATAATTTAGTTTAATTTGTTGCTAGCAACAGTAGTAGCGATAGTGTATTTCATTTATTATTAGTGCGAAAGGTTTCAGTCTTTATTTAGNAGTATATCGTTGCCTGGCGGGTTCGGATTCAATCAAAGCACTTCTCTTCATTCGGCCGAAGAGTGTATGAGTAAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGGTGTAAAGTGCCACGTG]
[+] EMBL AL694724 [GCCCGAGTTAAAGTCCTTTGGGTGTTTGCATCGAAGGGGCGGGTTGAACGTTTAAACTCTGTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCATCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATGTTTAGTTTTNGTTTTCCGTTGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTTGCAGCGATGATAAACGTTTCTTCTTTTTTTTTTTTAACAAAAACCACCCCGTTTAGCCCGAATCTCGCGAGTATAGGTTATTGTTTCGTGATTTTATTTTACTTGCTCGAAAATGCATACTTTTAATGATCGGAAGAAGAAGAAAATATTCTTTTAGTTAATTTAGGATGTTTTAGGAAAAAAAAGAAGAGAAAAGAAAACACCACAATGCGATGCATTATAATTTAGTTTAATTTGTTGCTAGCAACAGTAGTAGCGATAGTGTATTTCATTTATTATTAGTGCGAAAGGTTTCAGTCTTTATTTAGNAGTATATCGTTGCCTGGCGGGTTCGGATTCAATCAAAGCACTTCTCTTCATTCGGCCGAAGAGTGTATGAGTAAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGGTGTAAAGTGCCACGTG]
consensusID : consensus_5170#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence
[TAGCGTACACGGGTATGTTGTAAAATGGGGGTTTCAGCAGCTCCCTTTGGGTTTTGGTGTGGAGAAACAAAAAGCACATAATTTAGAGTAGTAATTCTGCTTTGAAAAAATAAAGGAAAGAAAGGGCTGGTAGACGGCAACAGGACAGAAGTTCCTTAGGGTGTTTGCATCGAAGGGGCGGGTTGAACGTTTAAACTCTGTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCCTCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATGTTTTGTTTTTTGTTTTCCGTTGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTTCCAGCGATGAT]
[+] EMBL BX616110 [TAGCGTACACGGGTATGTTGTAAAATGGGGGTTTCAGCAGCTCCCTTTGGGTTTTGGTGTGGAGAAACAAAAAGCACATAATTTAGAGTAGTAATTCTGCTTTGAAAAAATAAAGGAAAGAAAGGGCTGGTAGACGGCAACAGGACAGAAGTTCCTTAGGGTGTTTGCATCGAAGGGGCGGGTTGAACGTTTAAACTCTGTGCTTGTATAAATACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCCTCTTTCCCCCCTTTTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAGGTTTGAGCTGGTTAGATGGCATAATTATTATGTTTTGTTTTTTGTTTTCCGTTGCTTATCGTGTGTCTGTGTTGACGTACGCTGTACGCCTTCCAGCGATGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5170#1 ------------------------------------------------------------
consensus_5170#2 -----------------TAGCGTACACGGGTATGTTGTAAAATGGGGGTTTCAGCAGCTC 43
consensus_5170#0 AATCGCCCGAGGNNGAATGTATGAGTAATGTGTGTGGTTGGCGAGGCATCTTTTACACTG 60
consensus_5170#1 ------------------------------------------------------------
consensus_5170#2 CCTTTGGGTTTTGGTGTGGAGAAACAAAAAGCACATAATTTAGAGTAGTAAT--TCTGCT 101
consensus_5170#0 CAGGGAGATGTTGGTGTAAAGTGCCACGTGCTCAGTAAATTAGAATTTTAACCGTTTGTG 120
consensus_5170#1 --------------------------------------GCCCGAGTTA-----AAGTCCT 17
consensus_5170#2 TTGAAAAAATAAAGGAAAGAAAGGGCTGGTAGACGGCAACAGGACAGA-----AGTTCCT 156
consensus_5170#0 TTGAGGATGAAATAAAACTCAAAACAGAAAAGAAGAAAAAACAACCTATCCGTAATCCCA 180
* * * **
consensus_5170#1 TTGGGTGTTTGCATCGAAGGGGCGG-GTTGAACGTTTAAACTCTGTG--CTTGTATAA-A 73
consensus_5170#2 TAGGGTGTTTGCATCGAAGGGGCGG-GTTGAACGTTTAAACTCTGTG--CTTGTATAA-A 212
consensus_5170#0 TTATCTATCTGCTCATGTGACGCGAAGACACATGAGTATGCGAGGTGAATTGGGATAAGA 240
* * * *** * *** * * * ** * *** * * **** *
consensus_5170#1 TACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCATCTTTCCCCCCTT 133
consensus_5170#2 TACCCCGAAGGCTGATTAGCTGTACGTTGTAGGTAAAACACACATCCTCTTTCCCCCCTT 272
consensus_5170#0 CTTTCTTAATAATTACTATTTA-GCAAACGAATCACATAACACAACCGCTCTACACAGAG 299
* ** * * ** * * * * * ***** * ** * * *
consensus_5170#1 TTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAG--GT 191
consensus_5170#2 TTCCTCCCCAGCCAAGCACTGTGGTTTCGCATTTGCAAACGATCAACCAAGCGCAG--GT 330
consensus_5170#0 AGAATGAC-ACAAAGACGCTGTGGAAGAGCAGTGGAAAATAACGATTCTAAAATAACAGT 358
* * * * * ****** *** * * *** * * * * * **
consensus_5170#1 TTGAGCTGGTTAGATGGCATAATTATTATGTTTAGT-TTTN-GTTTTCCGTTGCTTATCG 249
consensus_5170#2 TTGAGCTGGTTAGATGGCATAATTATTATGTTTTGT-TTTTTGTTTTCCGTTGCTTATCG 389
consensus_5170#0 ACCCAAAAGCTCTATTCTACACACAC-ACGTACGATCTTTTTATCCTTCTCAACGCGTTG 417
* * ** * * * * ** * *** * * * * * *
consensus_5170#1 TGTGTCTGTGTTGACGTACGCTGTACGCCTTGCAGCGATGATAAACGTTTCTTCTTTTTT 309
consensus_5170#2 TGTGTCTGTGTTGACGTACGCTGTACGCCTTCCAGCGATGAT------------------ 431
consensus_5170#0 AACGTAGATGGTGGAAGACGATAAGTGTGACGAGGCAGTACAACACATATATACACATAT 477
** ** ** *** * * ** *
consensus_5170#1 TTTTTT-----AACAAAAACCACCCCGTTTAGCCCGAATCTCGCGAGTATAGGTTATTGT 364
consensus_5170#2 ------------------------------------------------------------
consensus_5170#0 GCAGTACAGAGAAAAAGAGAAAAGGTGAAAAGAGCCGATAAAGAGAAGAAACATTTTCGA 537
consensus_5170#1 TTCGTGATTTTATTTTACTTGCTCGAAAATGCATACTTTTAATGATCGGAAGAAGAAGAA 424
consensus_5170#2 ------------------------------------------------------------
consensus_5170#0 TTGGAAAGTTGGAAACAAATGTAACAAAAACAAAAAAAAATTGCATAAGAGAAGCAGTTG 597
consensus_5170#1 AATATTCTTTTAGTTAATTTAGGATGTTTTAGGAAAAAAAAGAAGAGAAAAGAAAACACC 484
consensus_5170#2 ------------------------------------------------------------
consensus_5170#0 GGAAAATACAAACACACACACACATGTAGAAGAGTAAAACTGGTGTAATGTACAACAGCT 657
consensus_5170#1 ACAATGCGATGCATTATAA----TTTAGTTTAATTTGTTGCTAGCAACAGTAGTAGCGAT 540
consensus_5170#2 ------------------------------------------------------------
consensus_5170#0 AACATACTTTTCAGTGTGGAATTTTCTCCTCCTCCTGTTGCGTGAAGTTGCAGTTGCGCC 717
consensus_5170#1 AGTGTATTTCATTTATTATTAGTGCGAAAGGT--TTCAGTCTTTATTTAGNAGTATATCG 598
consensus_5170#2 ------------------------------------------------------------
consensus_5170#0 GGAG-ATTGCATTTATTCGTATAAATTCATGTACCTTACTGTGTGTGTGTAAATGTATGT 776
consensus_5170#1 TTGCCTG-GCGGGTTCGGA-------TTCAATCAAAGCACTTCTCTTCATTCGGCCGAAG 650
consensus_5170#2 ------------------------------------------------------------
consensus_5170#0 GTGCGTGTGTGAGTGTGTACTGGTATTTCAAATTTGCCAATTCTCAAATTTTGTGCACGG 836
consensus_5170#1 AGTGTATGAGTAAATGTGTGTGGTTGGCGAGGCATCTTTTACACTGCAGGGAGATGTTGG 710
consensus_5170#2 ------------------------------------------------------------
consensus_5170#0 TTTGCCCCTGATCATCATCATTCTTCTTCACTCGTACTATTATTCTTGATGAAAGGTTGA 896
consensus_5170#1 TGTAAAGTGCCACGTG--------------------- 726
consensus_5170#2 -------------------------------------
consensus_5170#0 TGAAGGTAAAAACGATCGTCATCAAAGCTATGATCTA 933
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||