cluster # 5182

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Anopheles gambiae
cluster # 5182 cluster # 5182 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5182#0 length = 846 sequences # 3

consensus_5182#1 length = 560 sequences # 1

consensusID : consensus_5182#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 846
fasta sequence

                              [AAGAATCCCCCGAGGTTATTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTCAACGAGTACAAGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCGGCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTACGGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGACCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACGGCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGGAGATGATCCCACCGGTGCGTTCGTTGGGTATCAGATGCGATCGTTGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCGGTGAGATGGCCGATGGTTTGATTGATCTGGCGGGCACCATACTGATCAAAGCGCCGCTGCTCCGCGAAGCGCAGGCGAATGCACGCGTCAATCCAAACGCGACGTACCTGTACACGTTCGATTACG-TCGGCGAGCATTCGCGG-TTCGG-CTATGGGAA--CGATACGTCCCACTATCCGTTCGGCGGTGGCGTGCACCACTCCGACGACAAGCTGTACCTTTTCCCGTACCCACCGGGCAAGCCGGACGCGCTGAACGAACGCGATACGGCGATGGCGAAGCTGATGGTCGATCTGTGGACGTCGTTTGCGGCGGAAGGGGTACCAAAGTCGGACCGCTTGACCGTACCGTGGAACCCGATGACAGCTTATGCTGGGNCTTACCTTCACATCAACGA-TCCGCCGAGCGTGGGGGGACAATTT]

[+] EMBL AL930521             [AAGAATCCCCCGAGGTTATTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTCAACGAGTACAAGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCGGCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTACGGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGACCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACGGCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGGAGATGATCCCACCGGTGCGTTCGTTGGGTATCAGATGCGATCGTTGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCGGTGAGATGGCCGATGGTTNGATTGATCTGGCGGGCACCATACTGATCAAAGCGCCGCTGCTCCGCGAAGCGCAGGCGAATGCACGCGTCAATCCAAACGCGACGTACCTGTACACGTTCGATTTCGCTCGGCGAGCATTCGCGGCTTCGGCCTATGGGCACNCGATACGTCCCACTATCCGTTCGGCGGTGGCGTGCACCACTCC                                                                                                                                                                                                                            ]
[+] EMBL BX625202             [               acgTTTTATCAGAACGTAGACGTCTGGAAGCTGTTGCAAGTGTTCAACGAGTACAAGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCGGCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTACGGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGACCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACGGCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGGAGATGATCCCACCGGTGCGTTCGTTGGGTATCAGATGCGATCGTTGTTCACGTCGAAAGAGCTGGAAAGTGGCAGCTTCGGTGAGATGGCCGATGGATTGATTGATCTGGCGGGCACCATACTGATCAAAGCGCCGCTGCTCCGCGAAGCGCAGGCGAATGCACGCGTCAATCCAAACGCGACGTACCTGTACACGTTCGATTACG TCGGCGAGCATTCGCGG TTCGG CTATGGGAA  CGATACGTCCCACTATCCGTTCGGCGGTGGCGTGCACCATTCCGACGACAAGCTGTACCTTTTCCCGTACCCACCGGGCAAGCCGGACGCGCTGAACGAACGCGATACGGCGATGGCGAAGCTGATGGTCGATCTGTGGACGTCGTTTGCGGCGGAAGGGGTACCAAAGTCGGACCGCTTGACCGTACCGTGGAACCCGATGACAGCTTATGCTGGGNCTTACCTTCACATCAACGA TCCGCCGAGCGTGGG          ]
[+] EMBL BM591857             [                                                                                                                                                                                       ccGGTACGGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGACCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACGGCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGGAGATGATCCCACCGGTGCGTTCATTGGGTATCAGATGCGATCGTTGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCGGTGAGATGGCCGATGGTTTGATTGATCTGGCGGGCACCATACTGATCAAAGCGCCGCTGCTCCGCGAAGCGCAGGCGAATGCACGCGTCAATCCAAACGCGACGTACCTGTACACGTTCGATTACG TCGGCGAGCATTCGCGG TTCGG CTATGGGAA  CGATACGTCCCACTATCCGTTCGGCGGTGGCGTGCACCACTCCGACGACAAGCTGTACCTGTTCCCGTACCCACCGGGCAAGCCGGACGCGCTGAACGAACGCGATACGGCGATGGCGAAGCTGATGGTCGACCTGTGGACGTCGTTTGCGGCGGAAGGGGTACCAAAGTCGGACCGCTTGACCGTACCGTGGAACCCGATGACAGCTTACGCTGGGCCTTACCTTCACATCAACGATTCCGCCGAGCGTGGGGGGACAATTT]




>consensus_5182#0
AAGAATCCCCCGAGGTTATTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTC
AACGAGTACAAGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGG
CTCGTGACCGGCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAG
GGCAAGGTACGGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTT
CTGCTGACGACCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTT
ATGAAGTACGGCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGGAGATGATCCCACC
GGTGCGTTCGTTGGGTATCAGATGCGATCGTTGTTCACGTCGAAGGAGCTGGAAAGTGGC
AGCTTCGGTGAGATGGCCGATGGTTTGATTGATCTGGCGGGCACCATACTGATCAAAGCG
CCGCTGCTCCGCGAAGCGCAGGCGAATGCACGCGTCAATCCAAACGCGACGTACCTGTAC
ACGTTCGATTACGTCGGCGAGCATTCGCGGTTCGGCTATGGGAACGATACGTCCCACTAT
CCGTTCGGCGGTGGCGTGCACCACTCCGACGACAAGCTGTACCTTTTCCCGTACCCACCG
GGCAAGCCGGACGCGCTGAACGAACGCGATACGGCGATGGCGAAGCTGATGGTCGATCTG
TGGACGTCGTTTGCGGCGGAAGGGGTACCAAAGTCGGACCGCTTGACCGTACCGTGGAAC
CCGATGACAGCTTATGCTGGGNCTTACCTTCACATCAACGATCCGCCGAGCGTGGGGGGA
CAATTT

consensusID : consensus_5182#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence

                              [AGAATCCCCCCGAGGTTAATTTGAAGCTGGCGAGGAATTTGATGCACCGGAGGAAGAAATCGACACGTTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTCAACGAGTACAAGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCGGCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTACGGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGACCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACGGCCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGNGAGATGATCCCACCGGTGCGTTCGTTGGGTATCAGATGCGATCGTATGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCGGTGAGATGGCCGATGGTTGATCTGATCTGGCGGGCACCATACCTGATCAAAGCGCCCGCTGCCTCCGCCAACGCGCACGCN]

[+] EMBL AL694899             [AGAATCCCCCCGAGGTTAATTTGAAGCTGGCGAGGAATTTGATGCACCGGAGGAAGAAATCGACACGTTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTCAACGAGTACAAGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCGGCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTACGGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGACCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACGGCCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGNGAGATGATCCCACCGGTGCGTTCGTTGGGTATCAGATGCGATCGTATGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCGGTGAGATGGCCGATGGTTGATCTGATCTGGCGGGCACCATACCTGATCAAAGCGCCCGCTGCCTCCGCCAACGCGCACGCN]




>consensus_5182#1
AGAATCCCCCCGAGGTTAATTTGAAGCTGGCGAGGAATTTGATGCACCGGAGGAAGAAAT
CGACACGTTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTCAACGAGTACAA
GATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCGG
CGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTACG
GCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGAC
CGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACGG
CCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGNGAGATGATCCCACCGGTGCGTTC
GTTGGGTATCAGATGCGATCGTATGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCGG
TGAGATGGCCGATGGTTGATCTGATCTGGCGGGCACCATACCTGATCAAAGCGCCCGCTG
CCTCCGCCAACGCGCACGCN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5182#0      --------------------------------------------------AAGAATCCCC 10
consensus_5182#1      AGAATCCCCCCGAGGTTAATTTGAAGCTGGCGAGGAATTTGATGCACCGGAGGAAGAAAT 60
                                                                        * ***     

consensus_5182#0      CGAGGTTATTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTCAACGAGTACA 70
consensus_5182#1      CGACAC-GTTTTATCAGAACGTAGACGTTTGGAAGCTGTTGCAAGTGTTCAACGAGTACA 119
                      ***     ****************************************************

consensus_5182#0      AGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCG 130
consensus_5182#1      AGATAAAGACGACGCTGGAGAGCGGATTAGATCGTGTCGGTGGCAATCGGCTCGTGACCG 179
                      ************************************************************

consensus_5182#0      GCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTAC 190
consensus_5182#1      GCGATTGGGAGCGATACCTACCGCAAACGCCGCTGGAGTGCATGAAGCAGGGCAAGGTAC 239
                      ************************************************************

consensus_5182#0      GGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGA 250
consensus_5182#1      GGCCCAACATCCCGATGATGGCGGGCGTCACCAAGCACGAGGGCACCTTTCTGCTGACGA 299
                      ************************************************************

consensus_5182#0      CCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACG 310
consensus_5182#1      CCGTGTACGATCATTTCAAGAGGACGGGCAAGCTGGATGATCCTACTTTTATGAAGTACG 359
                      ************************************************************

consensus_5182#0      GC-TTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGG-AGATGATCCCACCGGTGCGTT 368
consensus_5182#1      GCCTTGATGGATGCTGTGAGCAAGTTCCTGGGTGCAGNGAGATGATCCCACCGGTGCGTT 419
                      ** **********************************  *********************

consensus_5182#0      CGTTGGGTATCAGATGCGATCGT-TGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCG 427
consensus_5182#1      CGTTGGGTATCAGATGCGATCGTATGTTCACGTCGAAGGAGCTGGAAAGTGGCAGCTTCG 479
                      *********************** ************************************

consensus_5182#0      GTGAGATGGCCGATGGTTTGATTGATCTGGCGGGCACCATAC-TGATCAAAGCGCC-GCT 485
consensus_5182#1      GTGAGATGGCCGATGGTTGATCTGATCTGGCGGGCACCATACCTGATCAAAGCGCCCGCT 539
                      ******************    ******************** ************* ***

consensus_5182#0      GC-TCCGCGAA-GCGCAGGCGAATGCACGCGTCAATCCAAACGCGACGTACCTGTACACG 543
consensus_5182#1      GCCTCCGCCAACGCGCACGCN--------------------------------------- 560
                      ** ***** ** ***** **                                        

consensus_5182#0      TTCGATTACGTCGGCGAGCATTCGCGGTTCGGCTATGGGAACGATACGTCCCACTATCCG 603
consensus_5182#1      ------------------------------------------------------------
                                                                                  

consensus_5182#0      TTCGGCGGTGGCGTGCACCACTCCGACGACAAGCTGTACCTTTTCCCGTACCCACCGGGC 663
consensus_5182#1      ------------------------------------------------------------
                                                                                  

consensus_5182#0      AAGCCGGACGCGCTGAACGAACGCGATACGGCGATGGCGAAGCTGATGGTCGATCTGTGG 723
consensus_5182#1      ------------------------------------------------------------
                                                                                  

consensus_5182#0      ACGTCGTTTGCGGCGGAAGGGGTACCAAAGTCGGACCGCTTGACCGTACCGTGGAACCCG 783
consensus_5182#1      ------------------------------------------------------------
                                                                                  

consensus_5182#0      ATGACAGCTTATGCTGGGNCTTACCTTCACATCAACGATCCGCCGAGCGTGGGGGGACAA 843
consensus_5182#1      ------------------------------------------------------------
                                                                                  

consensus_5182#0      TTT 846
consensus_5182#1      ---