cluster # 5185

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Anopheles gambiae
cluster # 5185 cluster # 5185 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5185#0 length = 1282 sequences # 3

consensus_5185#1 length = 888 sequences # 1

consensusID : consensus_5185#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1282
fasta sequence

                              [TCTTATTAAAAAATGCATTAAAAGTGCTAAATATATCTATAATAATGTAATGAATCACTTTCAACCGCACTTTCGAGGGGGAGAGCAGCAGGGAAGCTATCTTGATCGGTGGCTTCATTTGTCATCCGAGTGATTTTACGTACGTTTTCGTTTTTGTTTTAATTATAATCATATAAGAAACACACAAACAAACAAACAAACTAATCAATATATAGAGAGACTGGCTATAACATTACTTCATTAGCTTATTGTGTTAAGGTTTTTATCGTTTACTGCTGTACCCTTTTCTCATTCACTCACGTGTGTAATTCATCGGTTTGTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCGGGCACAATAATATGGCTCTATATGTACAGTACCTTCCGTTGTTGGGGTTGGGCAGCTCACCAGCGAGTTGATTCATTTAGTGTTTCACTTTTCCTTACAAATAAAACAAAACTTTAGTGTTAGCTGTTTCCCGGGGGGAACAGCAGTATTCGTAACTCTATGCATATGATAATATTCACGAGATTAATCGGTAAAATGCGGTGGGTGTGTGGTTGTAGTACAACCGGCAACCCACACTCACACACTCAAACACAAACGCATACGGTCTAAGGGAAAATGGGTGATATTGTGTATTGTATCTATTCGGAACAAATGTTCGTTTTATTTCTACAAACAAATGCGTTTCTGTTTTACTACTAATCGATTACCTTATTTTGTGCTCACAATTTATATAAAACAACTAATATAACTACGTTTATCAAAACAGCAGAGCAGAGCGGCAGCGCATCATTAGCGTTCGCGCCAGCCAGTTTAAAAGATGGTATACCTGATACGGGATTATAACAATAAACATAACACTAGGAAAACACTGTAGAACAAAACACCAACCAAGCCAATAAATGCTCGATACTCGAGTGATATAGGAGCAAGATAGAGAGAGAAGAAGGCAAGCAAACACAGCGTTAAAATAACTGGTTAATTTTCATATATTCGTGTTTTGTACTTTCGGCCACCTCTAGGAAGGGTTCCATTATATAGATAATATATATACACATTTGTACGTGTACGCGTGTCAGTTCAGAACGCTGTCCGTTCATACAATTAAACGACAAATTGCTTTTTTGACTAAATGCACACACACCCTACTACTAGCCATTACAAGCTCGATTATCAATTGTATCGTAACCGACAAACAACAAACATTTAAAAGTGGGGCAGTTTTTGGTTGTTGTGTAGTTCCAACACTCTCGCCCCCCGAGCA]

[+] EMBL BM630917             [TCTTATTAAAAAATGCATTAAAAGTGCTAAATATATCTATAATAATGTAATGAATCACTTTCAACCGCACTTTCGAGGGGGAGAGCAGCAGGGAAGCTATCTTGATCGGTGGCTTCATTTGTCATCCGAGTGATTTTACGTACGTTTTCGTTTTTGTTTTAATTATAATCATATAAGAAACACACAAACAAACAAACAAACTAATCAATATATAGAGAGACTGGCTATAACATTACTTCATTAGCTTATTGTGTTAAGGTTTTTATCGTTTACTGCTGTACCCTTTTCTCATTCACTCACGTGTGTAATTCATCGGTTTGTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCGGGCACAATAATATGGCTCTATATGTACAGTACCTTCCGTTGTTGGGGTTGGGCAGCTCACCAGCGAGTTGATTCATTTAGTGTTTCACTTTTCCTTACAAATAAAACAAAACTTTAGTGTTAGCTGTTTCCCGGGGGGAACAGCAGTATTCGTAACTCTATGCATATGATAATATTCACGAGATTAATCGGTAAAATGCGGTGGGTGTGTGGTTGTAGTACAACCGGCAACCCACACTCACACACTCAAACACAAACGCATACGGTCTAAGGGAAAATGGGTGATATTGTGTATTGTATCTATTCGGAACAAATGGTCGTTTTATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX626424             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGGCAACCCACACTCACACACTCAAACACAAACGCATACGGTCAAAGGGAAAATGGTTGATATTGTGTATTGTATCTATTCGGAACAAATGTTCGTTTTATTTCTACAAACAAATGCGTTTCTGTTTTACTACTAATCGATTACCTTATTTTGTGCTCACAATTTATATAAAACAACTAATATAACTACGTTTATCAAAACAGCAGAGCAGAGCGGCAGCGCATCATTAGCGTTCGCGCCAGCCAGTTTAAAAGATGGTATACCTGATACGGGATTATAACAATAAACATAACACTAGGAAAACACTGTAGAACAAAACACCAACCAAGCCAATAAATGCTCGATACTCGAGTGATATAGGAGCAAGATAGAGAGAGAAGAAGGCAAGCAAACACAGCGTTAAAATAACTGGTTAATTTTCATATATTCGTGTTTTGTACTTTCGGCCACCTCTAGGAAGGGTTCCATTATATAGATAATATATATACACATTTGTACGTGTACGCGTGTCAGTTCAGAACGCTGTCCGTTCATACAATTAAACGACAAATTGCTTTTTTGACTAAATGCACACACACCCTACTACTAGCCATTACAAGCTCGATTATCAATTGTATCGTAACCGACAAACAACAAACATTTAAA                                                     ]
[+] EMBL BX627054             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGTATCTATTCNGAACAAATGTTCGTTTTATTTCTACAAACAAATGCGTTTCTGTTTTACTACTAATCGATTACCTTATTTTGTGCTCACAATTTATATAAAACAACTAATATAACTACGTTTATCAAAACAGCA AGCAGAGCGGCAGCGCATCATTAGCGTTCGCGCCAGCCAGTTTAAAAGATGGTATACCTGATACGGGATTATAACAATAAACATAACACTAGGAAAACACTGTAGAACAAAACACCAACCAAGCCAATAAATGCTCGATACTCGAGTGATATAGGAGCAAGATAGAGAGAGTAGAAGGCAAGCAAACACAGCGTTAAAATAACTGGTTAATTTTCATATATTCGTGTTTTGTACTTTCGGCCACCTCTAGGAAGGGTTCCCCTATATAGATAATATATATACACATTTGTACGTGTACGCGTGTCAGTTCAGAACGCTGTCCGTTCATACAATTAAACGACAAATTGCTTTTTTGACTAAATGCACACACACCCTACTACTAGCCATTACAAGCTCGATTATCAATTGTATCGTAACCGACAAACAACAAACATTTAAAAGTGGGGCAGTTTTTGGTTGTTGTGTAGTTCCAACACTCTCGCCCCCCGAGCA]




>consensus_5185#0
TCTTATTAAAAAATGCATTAAAAGTGCTAAATATATCTATAATAATGTAATGAATCACTT
TCAACCGCACTTTCGAGGGGGAGAGCAGCAGGGAAGCTATCTTGATCGGTGGCTTCATTT
GTCATCCGAGTGATTTTACGTACGTTTTCGTTTTTGTTTTAATTATAATCATATAAGAAA
CACACAAACAAACAAACAAACTAATCAATATATAGAGAGACTGGCTATAACATTACTTCA
TTAGCTTATTGTGTTAAGGTTTTTATCGTTTACTGCTGTACCCTTTTCTCATTCACTCAC
GTGTGTAATTCATCGGTTTGTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCG
GGCACAATAATATGGCTCTATATGTACAGTACCTTCCGTTGTTGGGGTTGGGCAGCTCAC
CAGCGAGTTGATTCATTTAGTGTTTCACTTTTCCTTACAAATAAAACAAAACTTTAGTGT
TAGCTGTTTCCCGGGGGGAACAGCAGTATTCGTAACTCTATGCATATGATAATATTCACG
AGATTAATCGGTAAAATGCGGTGGGTGTGTGGTTGTAGTACAACCGGCAACCCACACTCA
CACACTCAAACACAAACGCATACGGTCTAAGGGAAAATGGGTGATATTGTGTATTGTATC
TATTCGGAACAAATGTTCGTTTTATTTCTACAAACAAATGCGTTTCTGTTTTACTACTAA
TCGATTACCTTATTTTGTGCTCACAATTTATATAAAACAACTAATATAACTACGTTTATC
AAAACAGCAGAGCAGAGCGGCAGCGCATCATTAGCGTTCGCGCCAGCCAGTTTAAAAGAT
GGTATACCTGATACGGGATTATAACAATAAACATAACACTAGGAAAACACTGTAGAACAA
AACACCAACCAAGCCAATAAATGCTCGATACTCGAGTGATATAGGAGCAAGATAGAGAGA
GAAGAAGGCAAGCAAACACAGCGTTAAAATAACTGGTTAATTTTCATATATTCGTGTTTT
GTACTTTCGGCCACCTCTAGGAAGGGTTCCATTATATAGATAATATATATACACATTTGT
ACGTGTACGCGTGTCAGTTCAGAACGCTGTCCGTTCATACAATTAAACGACAAATTGCTT
TTTTGACTAAATGCACACACACCCTACTACTAGCCATTACAAGCTCGATTATCAATTGTA
TCGTAACCGACAAACAACAAACATTTAAAAGTGGGGCAGTTTTTGGTTGTTGTGTAGTTC
CAACACTCTCGCCCCCCGAGCA

consensusID : consensus_5185#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 888
fasta sequence

                              [CAGAATCCCCGAGGTTTTAGTACCTTTTCTCATTCACTCACGTGTGTAATTCATCGGTTTGTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCGGGCACAATAATATGGCTCTATATGTACAGTACCTACCGTTGTTGGGGTTGGGCAGCTCACCAGCGAGTTGATTCATTTAGTGTTATCACTTTTCCTTACAAATAAAACAAAACTTTAGTGTTAGCTGTTTCCCGGGGGGAACAGCAGTATTCGTAACTCTATGCATATGATAATATTCACGAGATTAATCGGTAAAATGCGGTGGTGTGTGGTTGTAGTACAACCGGCAACCCACACTCACACACTCAAACACAACACGCATACGAGTCANANAGGGAAANTGGTCGATATTGTGTATTCGTATCTCATTCGGACACCACCTGTTCGTTTATNTCTACAAACACNAATGCGTANTCTGTAAACTACTAATCGCTTACCTCTACTTTCTGCTCACACATTTACTATAAACAGCNAACGTANATATAACATACGTTTACTCCAANAACAAGCAAAGCCAGCAGCGGCACGCGCACTCATTACGACGTTNCGCGACCAGTCAGACCAAACNCGCATGGTCATACCCCGNATNACNCGGGATATACACAGCAAACTCACAACCATNTAAACACCTCAGGGAACACACCCCACCTGGTAAGAAANCACAAAAGCGAAGCCACAACCCAAAGGCCCACAGTCAAACATGGGCTGCCGCATCAACTCNCAGTTGGNCNATCAGGNCAGCCCCACGNCAACCACACNCGNCAGTCACNCANCGCCCNGCACAACACAACCCCGCGCGTCAACACAAGTAACACACTGCGCGGNCACAACGCCCCCACNANCCCCC]

[+] EMBL AL694987             [CAGAATCCCCGAGGTTTTAGTACCTTTTCTCATTCACTCACGTGTGTAATTCATCGGTTTGTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCGGGCACAATAATATGGCTCTATATGTACAGTACCTACCGTTGTTGGGGTTGGGCAGCTCACCAGCGAGTTGATTCATTTAGTGTTATCACTTTTCCTTACAAATAAAACAAAACTTTAGTGTTAGCTGTTTCCCGGGGGGAACAGCAGTATTCGTAACTCTATGCATATGATAATATTCACGAGATTAATCGGTAAAATGCGGTGGTGTGTGGTTGTAGTACAACCGGCAACCCACACTCACACACTCAAACACAACACGCATACGAGTCANANAGGGAAANTGGTCGATATTGTGTATTCGTATCTCATTCGGACACCACCTGTTCGTTTATNTCTACAAACACNAATGCGTANTCTGTAAACTACTAATCGCTTACCTCTACTTTCTGCTCACACATTTACTATAAACAGCNAACGTANATATAACATACGTTTACTCCAANAACAAGCAAAGCCAGCAGCGGCACGCGCACTCATTACGACGTTNCGCGACCAGTCAGACCAAACNCGCATGGTCATACCCCGNATNACNCGGGATATACACAGCAAACTCACAACCATNTAAACACCTCAGGGAACACACCCCACCTGGTAAGAAANCACAAAAGCGAAGCCACAACCCAAAGGCCCACAGTCAAACATGGGCTGCCGCATCAACTCNCAGTTGGNCNATCAGGNCAGCCCCACGNCAACCACACNCGNCAGTCACNCANCGCCCNGCACAACACAACCCCGCGCGTCAACACAAGTAACACACTGCGCGGNCACAACGCCCCCACNANCCCCC]




>consensus_5185#1
CAGAATCCCCGAGGTTTTAGTACCTTTTCTCATTCACTCACGTGTGTAATTCATCGGTTT
GTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCGGGCACAATAATATGGCTCT
ATATGTACAGTACCTACCGTTGTTGGGGTTGGGCAGCTCACCAGCGAGTTGATTCATTTA
GTGTTATCACTTTTCCTTACAAATAAAACAAAACTTTAGTGTTAGCTGTTTCCCGGGGGG
AACAGCAGTATTCGTAACTCTATGCATATGATAATATTCACGAGATTAATCGGTAAAATG
CGGTGGTGTGTGGTTGTAGTACAACCGGCAACCCACACTCACACACTCAAACACAACACG
CATACGAGTCANANAGGGAAANTGGTCGATATTGTGTATTCGTATCTCATTCGGACACCA
CCTGTTCGTTTATNTCTACAAACACNAATGCGTANTCTGTAAACTACTAATCGCTTACCT
CTACTTTCTGCTCACACATTTACTATAAACAGCNAACGTANATATAACATACGTTTACTC
CAANAACAAGCAAAGCCAGCAGCGGCACGCGCACTCATTACGACGTTNCGCGACCAGTCA
GACCAAACNCGCATGGTCATACCCCGNATNACNCGGGATATACACAGCAAACTCACAACC
ATNTAAACACCTCAGGGAACACACCCCACCTGGTAAGAAANCACAAAAGCGAAGCCACAA
CCCAAAGGCCCACAGTCAAACATGGGCTGCCGCATCAACTCNCAGTTGGNCNATCAGGNC
AGCCCCACGNCAACCACACNCGNCAGTCACNCANCGCCCNGCACAACACAACCCCGCGCG
TCAACACAAGTAACACACTGCGCGGNCACAACGCCCCCACNANCCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5185#0      TCTTATTAAAAAATGCATTAAAAGTGCTAAATATATCTATAATAATGTAATGAATCACTT 60
consensus_5185#1      ------------------------------------------------------------
                                                                                  

consensus_5185#0      TCAACCGCACTTTCGAGGGGGAGAGCAGCAGGGAAGCTATCTTGATCGGTGGCTTCATTT 120
consensus_5185#1      ------------------------------------------------------------
                                                                                  

consensus_5185#0      GTCATCCGAGTGATTTTACGTACGTTTTCGTTTTTGTTTTAATTATAATCATATAAGAAA 180
consensus_5185#1      ------------------------------------------------------------
                                                                                  

consensus_5185#0      CACACAAACAAACAAACAAACTAATCAATATATAGAGAGACTGGCTATAACATTACTTCA 240
consensus_5185#1      ------------------------------------------------------------
                                                                                  

consensus_5185#0      TTAGCTTATTGTGTTAAGGTTTTTATCGTTTACTGCTGTACCCTTTTCTCATTCACTCAC 300
consensus_5185#1      --------------CAGAATCCCCGAGGTTT----TAGTACC-TTTTCTCATTCACTCAC 41
                                     *   *       ****      ***** *****************

consensus_5185#0      GTGTGTAATTCATCGGTTTGTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCG 360
consensus_5185#1      GTGTGTAATTCATCGGTTTGTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCG 101
                      ************************************************************

consensus_5185#0      GGCACAATAATATGGCTCTATATGTACAGTACCTTCCGTTGTTGGGGTTGGGCAGCTCAC 420
consensus_5185#1      GGCACAATAATATGGCTCTATATGTACAGTACCTACCGTTGTTGGGGTTGGGCAGCTCAC 161
                      ********************************** *************************

consensus_5185#0      CAGCGAGTTGATTCATTTAGTGTT-TCACTTTTCCTTACAAATAAAACAAAACTTTAGTG 479
consensus_5185#1      CAGCGAGTTGATTCATTTAGTGTTATCACTTTTCCTTACAAATAAAACAAAACTTTAGTG 221
                      ************************ ***********************************

consensus_5185#0      TTAGCTGTTTCCCGGGGGGAACAGCAGTATTCGTAACTCTATGCATATGATAATATTCAC 539
consensus_5185#1      TTAGCTGTTTCCCGGGGGGAACAGCAGTATTCGTAACTCTATGCATATGATAATATTCAC 281
                      ************************************************************

consensus_5185#0      GAGATTAATCGGTAAAATGCGGTGGGTGTGTGGTTGTAGTACAACCGGCAACCCACACTC 599
consensus_5185#1      GAGATTAATCGGTAAAATGCGGTGG-TGTGTGGTTGTAGTACAACCGGCAACCCACACTC 340
                      ************************* **********************************

consensus_5185#0      ACACACTCAAACACAA-ACGCATACGGTCTAA---GGGAAAATGGGTGATATTGTGTATT 655
consensus_5185#1      ACACACTCAAACACAACACGCATACGAGTCANANAGGGAAANTGGTCGATATTGTGTATT 400
                      **************** *********    *    ****** ***  *************

consensus_5185#0      -GTATCT-ATTCGGAA--CAAATGTTCGTTTTATTTCTACAAACA--AATGCGTTTCTGT 709
consensus_5185#1      CGTATCTCATTCGGACACCACCTGTTCGTTT-ATNTCTACAAACACNAATGCGTANTCTG 459
                       ****** *******   **  ********* ** **********  *******      

consensus_5185#0      TTTACTACTAATCGATTACCT-TATTTTGTGCTCACA-ATTTATATAAAACAACTAA--- 764
consensus_5185#1      TAAACTACTAATCGCTTACCTCTACTTTCTGCTCACACATTTACTATAAACAGCNAACGT 519
                      *  *********** ****** ** *** ******** *****    ***** * **   

consensus_5185#0      ---TATAAC-TACGTTTATCAAAACAGCAGAGCAGAGCGGCAGCGCATCATTAGCGTTCG 820
consensus_5185#1      ANATATAACATACGTTTACTCCAANAACAAGCAAAGCCAGCAGCGG--CACGCGCACTCA 577
                         ****** ********    ** * **    *   * ******   **   **  ** 

consensus_5185#0      CGCCAGCCAGTTTAAAAGATGGTATACCTGATACGGGATTATAACAATAAACATAACACT 880
consensus_5185#1      TTACGAC--GTTNCGCGACCAGTCAGACCAAACNCGCATGGTCATACCCCGNATNACNCG 635
                         *  *  ***         **    *  *    * **  * * *      ** ** * 

consensus_5185#0      AGGAAAACACTGTAGAACAAAACACCAACCAAGCCAATAAATGCTCGATACTCGAGTGAT 940
consensus_5185#1      GGATATACACAGCA-AACTCACAACCATNTAAACACCTCAGGGAACACACCCCACCTGGT 694
                       *  * **** * * ***  *  ****   ** *   * *  *  *    * *   ** *

consensus_5185#0      ATAGGAGCAAGATAGAGAGAGAAGAAGGCAAGCAAACACAGCGTTAAAATAACTGGTTAA 1000
consensus_5185#1      AAGAAANCACAAAAGCGAAGCCACAACCCAAAGGCCCACAG---TCAAACA-TGGGCTG- 749
                      *    * **  * ** **    * **  ***     *****   * *** *   ** *  

consensus_5185#0      TTTTCATATATTCGTGTTTTGTACTTTCGGCCACCTCTAGGAAGGGTTCCATTATATAGA 1060
consensus_5185#1      -CCGCATCAACTCNCAGTTGGNCNATCAGGNCAGCCCCACGNCAA-CCACACNCGNCAGT 807
                          ***  * **    ** *    *  ** ** * * * *        **      ** 

consensus_5185#0      TAATATATATACACATTTGTACGTGTACGCGTGTCAGTTCAG--AACGCTGTCCGTTCAT 1118
consensus_5185#1      CACNCANCGCCCNGCACAACACAACCCCGCGCGTCAACACAAGTAACACACTGCGCGGNC 867
                       *         *        **     **** ****   **   *** *  * **     

consensus_5185#0      ACAATTAAACGACAAATTGCTTTTTTGACTAAATGCACACACACCCTACTACTAGCCATT 1178
consensus_5185#1      ACAACGCCCCCACNANCCCCC--------------------------------------- 888
                      ****     * ** *    *                                        

consensus_5185#0      ACAAGCTCGATTATCAATTGTATCGTAACCGACAAACAACAAACATTTAAAAGTGGGGCA 1238
consensus_5185#1      ------------------------------------------------------------
                                                                                  

consensus_5185#0      GTTTTTGGTTGTTGTGTAGTTCCAACACTCTCGCCCCCCGAGCA 1282
consensus_5185#1      --------------------------------------------