cluster # 5195

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Anopheles gambiae
cluster # 5195 cluster # 5195 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5195#0 length = 737 sequences # 1

consensus_5195#1 length = 600 sequences # 3

consensusID : consensus_5195#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 737
fasta sequence

                              [AGGCAGAATCCCCCCGAGGTTATTAAAAGTTTGCGCAAACGCTCCGCCGCTTCGGGGTGTTAAGCAATTATCTTGAGACATAAGCAAACGCGCGAGGGCGCACGAGCGCGCACACAGACACGTTGGTTAGTTGGGCGGTGTGCACCGACGATGATTCAAAATTTTGCAACAAATAATGCACTGTTCGGTGAGATTGTTTAATCGCATGTAAGTTATTCTGACCACCATATTTCGGTGGGATTCTGGATTCAGCAAACTGTTTGTTACTCCCCTCTATTGCATTTAGTATTATTGCTCTTGCTGAATCCGCTTTCCATACTCACTATTAGCTCCATTCCCTTTCCCCTTGTGAAACCCGTTTGTCGCCGTATATTATTTCAAGCTCCGAATTTTACAAACGCGCTAGNTTTTCTACACACGTGGTATTTCCATTCACCACACCCACANCACNAAACAANCACACANNACACNANACCNNNACANCACACAACAAGCAANNNNAANACANAGGACACNGAGCCGNGGNCGACAGGCCGNNAGAGCGNCNGNGANANGCAGGCGANNGNNCNGCCAGAGAGNGANANGNAACGAAGNGGAGGGANAAAANAAAGNGNACNNANNGACAACCNCNNCAANNNAAGAGAGAGNNNCACNNGANNAGNNNGGCGGAGAGCANANCGNNNCGNNNNNGCNCGACCAACAAGCANNCAGGNANNAGCANNNNGNAAAAGANANGG]

[+] EMBL AL695270             [AGGCAGAATCCCCCCGAGGTTATTAAAAGTTTGCGCAAACGCTCCGCCGCTTCGGGGTGTTAAGCAATTATCTTGAGACATAAGCAAACGCGCGAGGGCGCACGAGCGCGCACACAGACACGTTGGTTAGTTGGGCGGTGTGCACCGACGATGATTCAAAATTTTGCAACAAATAATGCACTGTTCGGTGAGATTGTTTAATCGCATGTAAGTTATTCTGACCACCATATTTCGGTGGGATTCTGGATTCAGCAAACTGTTTGTTACTCCCCTCTATTGCATTTAGTATTATTGCTCTTGCTGAATCCGCTTTCCATACTCACTATTAGCTCCATTCCCTTTCCCCTTGTGAAACCCGTTTGTCGCCGTATATTATTTCAAGCTCCGAATTTTACAAACGCGCTAGNTTTTCTACACACGTGGTATTTCCATTCACCACACCCACANCACNAAACAANCACACANNACACNANACCNNNACANCACACAACAAGCAANNNNAANACANAGGACACNGAGCCGNGGNCGACAGGCCGNNAGAGCGNCNGNGANANGCAGGCGANNGNNCNGCCAGAGAGNGANANGNAACGAAGNGGAGGGANAAAANAAAGNGNACNNANNGACAACCNCNNCAANNNAAGAGAGAGNNNCACNNGANNAGNNNGGCGGAGAGCANANCGNNNCGNNNNNGCNCGACCAACAAGCANNCAGGNANNAGCANNNNGNAAAAGANANGG]




>consensus_5195#0
AGGCAGAATCCCCCCGAGGTTATTAAAAGTTTGCGCAAACGCTCCGCCGCTTCGGGGTGT
TAAGCAATTATCTTGAGACATAAGCAAACGCGCGAGGGCGCACGAGCGCGCACACAGACA
CGTTGGTTAGTTGGGCGGTGTGCACCGACGATGATTCAAAATTTTGCAACAAATAATGCA
CTGTTCGGTGAGATTGTTTAATCGCATGTAAGTTATTCTGACCACCATATTTCGGTGGGA
TTCTGGATTCAGCAAACTGTTTGTTACTCCCCTCTATTGCATTTAGTATTATTGCTCTTG
CTGAATCCGCTTTCCATACTCACTATTAGCTCCATTCCCTTTCCCCTTGTGAAACCCGTT
TGTCGCCGTATATTATTTCAAGCTCCGAATTTTACAAACGCGCTAGNTTTTCTACACACG
TGGTATTTCCATTCACCACACCCACANCACNAAACAANCACACANNACACNANACCNNNA
CANCACACAACAAGCAANNNNAANACANAGGACACNGAGCCGNGGNCGACAGGCCGNNAG
AGCGNCNGNGANANGCAGGCGANNGNNCNGCCAGAGAGNGANANGNAACGAAGNGGAGGG
ANAAAANAAAGNGNACNNANNGACAACCNCNNCAANNNAAGAGAGAGNNNCACNNGANNA
GNNNGGCGGAGAGCANANCGNNNCGNNNNNGCNCGACCAACAAGCANNCAGGNANNAGCA
NNNNGNAAAAGANANGG

consensusID : consensus_5195#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 600
fasta sequence

                              [CCGACATAGCAAAGCGGTGGCGAGTGAGTGAGGTTGTAATAGTAAATGCAACCTCCCCCTCCCCGGTCCAGCTCCATTCATCTATCCATCCAAGCATCCATCGCTCTGCATTGCTAAAGATGTGTCCGCTTTCCACCCCTCCTCCATCCTTCGGTGCGCGCCACCGTCAACGAGCTGTGAGATGATCATTTGCGGTTAAAAAGTTTGCGCAAACGCTCCGCCGCTTCGGGGGTTAAGCAATTATCTTGAGACATAAGCAAACGCGCGAGGGCGCACGAGCGCGCACACAGACACGTTGGTTAGTTGGGCGGTGTGCACCGACGATGATTCAAAATTTTGCAACAAATAATGCACTGTTCGGTGAGATTGTTTAATCGCATGTAAGTTAT-TCTGACCACCATATTTCGGTGGGATTCTGGATTCAGCAAACTGTTTGTTACTCCCCTCTATTGCATTTAGTATTATTGCTCTTGCTGAATCCGCTTTCCATACTCACTATTAGCTCCATTCCCTTTCCCCTTGTGAAACCCGTTTTGTCGCCGTTTTATTTCAGCTCCGAATTTTACAAAGCGCTAGTTTTTAAAGTGTATTCCTCCCCCC]

[+] EMBL BM592409             [CCGACATAGCAAAGCGGTGGCGAGTGAGTGAGGTTGTAATAGTAAATGCAACCTCCCCCTCCCCGGTCCAGCTCCATTCATCTATCCATCCAAGCATCCATCGCTCTGCATTGCTAAAGATGTGTCCGCTTTCCACCCCTCCTCCATCCTTCGGTGCGCGCCACCGTCAACGAGCTGTGAGATGATCATTTGCGGTTAAAAAGTTTGCGCAAACGCTCCGCCGCTTCGGGGGTTAAGCAATTATCTTGAGACATAAGCAAACGCGCGAGGGCGCACGAGCGCGCACACAGACACGTTGGTTAGTTGGGCGGTGTGCACCGACGATGATTCAAAATTTTGCAACAAATAATGCACTGTTCGGTGAGATTGTTTAATCGCATGTAAGTTAT TCTGACCACCATATTTCGGTGGGATTCTGGATTCAGCAAACTGTTTGTTACTCCCCTCTATTGCATTTAGTATTATTGCTCTTGCTGAATC                                                                                                                        ]
[+] EMBL BX626117             [                                                                                                                                                                                                                                                                                            ACACAGACACGTTGGTTAGTTGGGCGGTGTGCACCGACGATGATTCAAAATTTTGCAACAAATAATGCACTGTTCGGTGAGATTGTTTAATCGCATGTAAGTTAT TCTGACCACCATATTTCGGTGGGATTCTGGATTCAGCAAACTGTTTGTTACTCCCCTCTATTGCATTTAGTATTATTGCTCTTGCTGAATCCGCTTTCCATACTCACTATTAGCTCCATTCCCTTTCCCCTTGTGAAACCCGTTTTGTCGCCGTTTTATTTCAGCTCCGAATTTTACAAAGCGCTAGTTTTTAAAGTGTATTCCTCCCCCC]
[+] EMBL BX622158             [                                                                                                                                                                                                                                                                                                                                                                            nATTGATTAATCGCATGGAAGTTATGTCTGACCACCATATTTCGGNGGGATTCTGGATTCAGCAAACTGTTTGCTACTCCCCTCTATTGCATTTAGTANTANTGCTCTTGCTGAATCCGCTTGCCATACTCACTA                                                                                                      ]




>consensus_5195#1
CCGACATAGCAAAGCGGTGGCGAGTGAGTGAGGTTGTAATAGTAAATGCAACCTCCCCCT
CCCCGGTCCAGCTCCATTCATCTATCCATCCAAGCATCCATCGCTCTGCATTGCTAAAGA
TGTGTCCGCTTTCCACCCCTCCTCCATCCTTCGGTGCGCGCCACCGTCAACGAGCTGTGA
GATGATCATTTGCGGTTAAAAAGTTTGCGCAAACGCTCCGCCGCTTCGGGGGTTAAGCAA
TTATCTTGAGACATAAGCAAACGCGCGAGGGCGCACGAGCGCGCACACAGACACGTTGGT
TAGTTGGGCGGTGTGCACCGACGATGATTCAAAATTTTGCAACAAATAATGCACTGTTCG
GTGAGATTGTTTAATCGCATGTAAGTTATTCTGACCACCATATTTCGGTGGGATTCTGGA
TTCAGCAAACTGTTTGTTACTCCCCTCTATTGCATTTAGTATTATTGCTCTTGCTGAATC
CGCTTTCCATACTCACTATTAGCTCCATTCCCTTTCCCCTTGTGAAACCCGTTTTGTCGC
CGTTTTATTTCAGCTCCGAATTTTACAAAGCGCTAGTTTTTAAAGTGTATTCCTCCCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5195#0      ------------------------------------------------------------
consensus_5195#1      CCGACATAGCAAAGCGGTGGCGAGTGAGTGAGGTTGTAATAGTAAATGCAACCTCCCCCT 60
                                                                                  

consensus_5195#0      ------------------------------------------------------------
consensus_5195#1      CCCCGGTCCAGCTCCATTCATCTATCCATCCAAGCATCCATCGCTCTGCATTGCTAAAGA 120
                                                                                  

consensus_5195#0      --------------------------------------------------------AGGC 4
consensus_5195#1      TGTGTCCGCTTTCCACCCCTCCTCCATCCTTCGGTGCGCGCCACCGTCAACGAGCTGTGA 180
                                                                                * 

consensus_5195#0      AGAATCCCCCCGAGGTTATTAAAAGTTTGCGCAAACGCTCCGCCGCTTCGGGGTGTTAAG 64
consensus_5195#1      GATGATCATTTGCGGTTA--AAAAGTTTGCGCAAACGCTCCGCCGCTTCGGGG-GTTAAG 237
                            *    * *****  ********************************* ******

consensus_5195#0      CAATTATCTTGAGACATAAGCAAACGCGCGAGGGCGCACGAGCGCGCACACAGACACGTT 124
consensus_5195#1      CAATTATCTTGAGACATAAGCAAACGCGCGAGGGCGCACGAGCGCGCACACAGACACGTT 297
                      ************************************************************

consensus_5195#0      GGTTAGTTGGGCGGTGTGCACCGACGATGATTCAAAATTTTGCAACAAATAATGCACTGT 184
consensus_5195#1      GGTTAGTTGGGCGGTGTGCACCGACGATGATTCAAAATTTTGCAACAAATAATGCACTGT 357
                      ************************************************************

consensus_5195#0      TCGGTGAGATTGTTTAATCGCATGTAAGTTATTCTGACCACCATATTTCGGTGGGATTCT 244
consensus_5195#1      TCGGTGAGATTGTTTAATCGCATGTAAGTTATTCTGACCACCATATTTCGGTGGGATTCT 417
                      ************************************************************

consensus_5195#0      GGATTCAGCAAACTGTTTGTTACTCCCCTCTATTGCATTTAGTATTATTGCTCTTGCTGA 304
consensus_5195#1      GGATTCAGCAAACTGTTTGTTACTCCCCTCTATTGCATTTAGTATTATTGCTCTTGCTGA 477
                      ************************************************************

consensus_5195#0      ATCCGCTTTCCATACTCACTATTAGCTCCATTCCCTTTCCCCTTGTGAAACCCGTTT-GT 363
consensus_5195#1      ATCCGCTTTCCATACTCACTATTAGCTCCATTCCCTTTCCCCTTGTGAAACCCGTTTTGT 537
                      ********************************************************* **

consensus_5195#0      CGCCGTATATTATTTCAAGCTCCGAATTTTACAAACGCGCTAGNTTTTCTACACACGTGG 423
consensus_5195#1      CGCCGTTT--TATTTCA-GCTCCGAATTTTACAAA-GCGCTAGTTTTTAAA---GTGTAT 590
                      ****** *  ******* ***************** ******* ****  *     **  

consensus_5195#0      TATTTCCATTCACCACACCCACANCACNAAACAANCACACANNACACNANACCNNNACAN 483
consensus_5195#1      TCCTCCCCCC-------------------------------------------------- 600
                      *  * **                                                     

consensus_5195#0      CACACAACAAGCAANNNNAANACANAGGACACNGAGCCGNGGNCGACAGGCCGNNAGAGC 543
consensus_5195#1      ------------------------------------------------------------
                                                                                  

consensus_5195#0      GNCNGNGANANGCAGGCGANNGNNCNGCCAGAGAGNGANANGNAACGAAGNGGAGGGANA 603
consensus_5195#1      ------------------------------------------------------------
                                                                                  

consensus_5195#0      AAANAAAGNGNACNNANNGACAACCNCNNCAANNNAAGAGAGAGNNNCACNNGANNAGNN 663
consensus_5195#1      ------------------------------------------------------------
                                                                                  

consensus_5195#0      NGGCGGAGAGCANANCGNNNCGNNNNNGCNCGACCAACAAGCANNCAGGNANNAGCANNN 723
consensus_5195#1      ------------------------------------------------------------
                                                                                  

consensus_5195#0      NGNAAAAGANANGG 737
consensus_5195#1      --------------