cluster # 52

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Anopheles gambiae
cluster # 52 cluster # 52 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_52#0 length = 529 sequences # 1

consensus_52#1 length = 491 sequences # 1

consensusID : consensus_52#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence

                              [CACAAAGCTGATGAAAGCTCTGCCCAAGGAAGAATTTTGCGTAAAGGACTTCCAGGACAATGGCTGGGAGATCAAGATGGAGGATCTGCAGCTGAAGGAAAACATCGGCAAGGGTGAATTCGGGGACGTAATGCTGGGCATAATGAAGGGCGAGAAGGTCGCAGTGAAAGTGCTGAAGGATGCTGGCCGCGCGTCAAACAAATTCCTTGCCGAAGCTGGCGTAATGACTACATTGGAGCATGAAAATCTCGTCAAGTTTATTGGTCTTGTATTTCACGACAAGTACATCTATCTCGTAACAGAGTACATGAGCAAAGGATCGCTGGTCGACTATCTGCGGTCACGTGGTCGGCAACACATAAGCCGGAAGGATCAGATCAACTTTGCCTACGACACCTGCTGCGGCATGGAGTATTTAGAGACCAAAAAAGTGATCCATCGAGATCTGGCTGCCCGCAACGTGCTCATTTCCGAGGATTGTGTCGCGAAGGTGTCCGATTTTGGATTGGCGCGCGACGAGCGTTATACT]

[+] EMBL BX617327             [CACAAAGCTGATGAAAGCTCTGCCCAAGGAAGAATTTTGCGTAAAGGACTTCCAGGACAATGGCTGGGAGATCAAGATGGAGGATCTGCAGCTGAAGGAAAACATCGGCAAGGGTGAATTCGGGGACGTAATGCTGGGCATAATGAAGGGCGAGAAGGTCGCAGTGAAAGTGCTGAAGGATGCTGGCCGCGCGTCAAACAAATTCCTTGCCGAAGCTGGCGTAATGACTACATTGGAGCATGAAAATCTCGTCAAGTTTATTGGTCTTGTATTTCACGACAAGTACATCTATCTCGTAACAGAGTACATGAGCAAAGGATCGCTGGTCGACTATCTGCGGTCACGTGGTCGGCAACACATAAGCCGGAAGGATCAGATCAACTTTGCCTACGACACCTGCTGCGGCATGGAGTATTTAGAGACCAAAAAAGTGATCCATCGAGATCTGGCTGCCCGCAACGTGCTCATTTCCGAGGATTGTGTCGCGAAGGTGTCCGATTTTGGATTGGCGCGCGACGAGCGTTATACT]




>consensus_52#0
CACAAAGCTGATGAAAGCTCTGCCCAAGGAAGAATTTTGCGTAAAGGACTTCCAGGACAA
TGGCTGGGAGATCAAGATGGAGGATCTGCAGCTGAAGGAAAACATCGGCAAGGGTGAATT
CGGGGACGTAATGCTGGGCATAATGAAGGGCGAGAAGGTCGCAGTGAAAGTGCTGAAGGA
TGCTGGCCGCGCGTCAAACAAATTCCTTGCCGAAGCTGGCGTAATGACTACATTGGAGCA
TGAAAATCTCGTCAAGTTTATTGGTCTTGTATTTCACGACAAGTACATCTATCTCGTAAC
AGAGTACATGAGCAAAGGATCGCTGGTCGACTATCTGCGGTCACGTGGTCGGCAACACAT
AAGCCGGAAGGATCAGATCAACTTTGCCTACGACACCTGCTGCGGCATGGAGTATTTAGA
GACCAAAAAAGTGATCCATCGAGATCTGGCTGCCCGCAACGTGCTCATTTCCGAGGATTG
TGTCGCGAAGGTGTCCGATTTTGGATTGGCGCGCGACGAGCGTTATACT

consensusID : consensus_52#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTCGAGATCTGGCTGCCCGCAACGTGCTCATTTCCGAGGATTGTGTCGCGAAGGTGTCCGATTTTGGATTGGCGCGCGACGAGCGTTATACTGGTGATAGCAGCAAGCTTCCGATTAAGTGGACGGCTCCGGATCGTTAAAGGAAGGTAAATTCTCCAACAAAACGGACATGTGGAGTTTTGGAATTCTACTATGGGAAATCTATTCATTCGGACGCGTACCATACCCGAGAATTGTGAGTGTTGCTTTTCCGCTTCTTTTCTTTCCTTCCTTCCTTTCTGAATGCCAACTCATATCTTTTCTTTGCCTTGCTCTATAGCCTTTGGCCGATGTGGTGAAACACGTTGGCAGTGGTTACAAAATGGAAGCCCCCGAAGGTTGCCCACCGGAGATCTATGAAATGATGCGTCAAGCGTGGGATCTGGTGCCCGAAAAGCGTCCAACCTTTGCCGAGCTGAAGCGGCG]

[+] EMBL BM630175             [CCGCGGACGCGTGGGCGGACGCGTGGGTCGAGATCTGGCTGCCCGCAACGTGCTCATTTCCGAGGATTGTGTCGCGAAGGTGTCCGATTTTGGATTGGCGCGCGACGAGCGTTATACTGGTGATAGCAGCAAGCTTCCGATTAAGTGGACGGCTCCGGATCGTTAAAGGAAGGTAAATTCTCCAACAAAACGGACATGTGGAGTTTTGGAATTCTACTATGGGAAATCTATTCATTCGGACGCGTACCATACCCGAGAATTGTGAGTGTTGCTTTTCCGCTTCTTTTCTTTCCTTCCTTCCTTTCTGAATGCCAACTCATATCTTTTCTTTGCCTTGCTCTATAGCCTTTGGCCGATGTGGTGAAACACGTTGGCAGTGGTTACAAAATGGAAGCCCCCGAAGGTTGCCCACCGGAGATCTATGAAATGATGCGTCAAGCGTGGGATCTGGTGCCCGAAAAGCGTCCAACCTTTGCCGAGCTGAAGCGGCG]




>consensus_52#1
CCGCGGACGCGTGGGCGGACGCGTGGGTCGAGATCTGGCTGCCCGCAACGTGCTCATTTC
CGAGGATTGTGTCGCGAAGGTGTCCGATTTTGGATTGGCGCGCGACGAGCGTTATACTGG
TGATAGCAGCAAGCTTCCGATTAAGTGGACGGCTCCGGATCGTTAAAGGAAGGTAAATTC
TCCAACAAAACGGACATGTGGAGTTTTGGAATTCTACTATGGGAAATCTATTCATTCGGA
CGCGTACCATACCCGAGAATTGTGAGTGTTGCTTTTCCGCTTCTTTTCTTTCCTTCCTTC
CTTTCTGAATGCCAACTCATATCTTTTCTTTGCCTTGCTCTATAGCCTTTGGCCGATGTG
GTGAAACACGTTGGCAGTGGTTACAAAATGGAAGCCCCCGAAGGTTGCCCACCGGAGATC
TATGAAATGATGCGTCAAGCGTGGGATCTGGTGCCCGAAAAGCGTCCAACCTTTGCCGAG
CTGAAGCGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_52#0      CACAAAGCTGATGAAAGCTCTGCCCAAGGAAGAATTTTGCGTAAAGGACTTCCAGGACAA 60
consensus_52#1      -----------------------------------------CCGCGGACGCGTGGGCGGA 19
                                                                 ****     **   *

consensus_52#0      TGGCTGGGAGATCAAGATGGAGGATCTGCAGCTGAAGGAAAACATCGGCAAGGGTGAATT 120
consensus_52#1      CGCGTGGG---TCGAGATCTGG---CTGCC-CGCAACGTGCTCATTTCCGAGGATTGTGT 72
                     *  ****   ** ****   *   ****  *  ** *    ***   * *** *    *

consensus_52#0      CGGGGACGTAATGCTGGGCATAATGAAGGGCGAGAAGGTCGCAGTGAAAGTGCTGAAGGA 180
consensus_52#1      CGCGAAGGTG--TCCGATTTTGGATTGGCGCGCGACGAGCGTTAT---ACTGGTGATAGC 127
                    ** * * **    * *    *      * *** ** *  **   *   * ** ***  * 

consensus_52#0      TGCTGGCCGCGCGTCAAACAAATTCCTTGCCGAAGCTGGCGTAATGACTACATTGGAGCA 240
consensus_52#1      AGCAAGCTTCCGATTAAGTGGACGGCTCCGGATCGTTAAAGGAAGGTAAATTCTCCAACA 187
                     **  **  *   * **    *   **       * *   * ** *   *   *  * **

consensus_52#0      TGAAAATCTCGTCAAGTTTATTGGTCTTGTATTTCACGACAAGTACATCTATCTCGTAAC 300
consensus_52#1      AAACGGACATGTGGAGTTT--TGGAATTCTACT--ATGGGAAATCTATTCATTCGGACGC 243
                      *    *  **  *****  ***  ** ** *  * *  ** *  **  **   *   *

consensus_52#0      AGA--GTACATGAGCAAAG-GATCGCTGGTCGACTATCTGCGGTCACGTGGTCGGCAACA 357
consensus_52#1      GTACCATACCCGAGAATTGTGAGTGTTGCTTTTCCGCTTCTTTTCTTTCCTTCCTTCCTT 303
                      *   ***  *** *  * **  * ** *   *    *    **      **       

consensus_52#0      CATAAGCCGGAAGGATCAGATCAACTTTGCCTACGACACCTGCTGCGGCATGGAGTATTT 417
consensus_52#1      TCTGAATGCCAACTCATATCTTTTCTTTGCCTTGCTCTATAGCCTTTGGCCGATGTGGTG 363
                      * *     **     *  *   ********    *    **    *   *  **  * 

consensus_52#0      AGAGACCAAAAAAGTGATCCATCGAGATCTGGCTGCCCGCAACGTGCTCATTTCCGAGGA 477
consensus_52#1      AAACACGTTGGCAGTGGTTA--CAAAATGGAAGCCCCCGAAGGTTGCCCAC--CGGAGAT 419
                    * * **      **** *    * * **       **** *   *** **   * ***  

consensus_52#0      TTGTGTCGCGAAGGTGTCCGATTTTGGAT-TGGCGCGCGACGAGCGTTATACT------- 529
consensus_52#1      CTATGAAATGATG-CGTCAAGCGTGGGATCTGGTGCCCGAAAAGCGTCCAACCTTTGCCG 478
                     * **    ** *  ***     * **** *** ** ***  *****   **        

consensus_52#0      -------------
consensus_52#1      AGCTGAAGCGGCG 491