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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1031 fasta sequence
[CCGAGGTTAATNGTGCTGAGCAGGTGTGAGCCGCCGCGCGGCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATACACACCCCAGNGCTCGGGCTCGTACCTACGTACCACCGGTCTACCGGCGAAGTGAAACGAACAAAACCCATAGCTACAACGAGCACCGGGATACTTGGTCAACAATCACCACCAGCACAGCCACATGTGCTGACCTGGCCAGCTGGAATGCTGCTATACCCGAGCCATGGCTGTGCTGCTGCCCTGCACAGGGCAAGAAGAAAACTGGGCACATTCGATACTGGGCTGCTGGTCACAATCATAAAACCCCAGACCCGAAACTGTGCTACGGCGCCAGNTACCCGTACGGTAGCCCAAGCTNGGCAGCNGCCTGGCCGGNTTGCCCCGCAATNGGAATATTGCAATTTCTTGTAACCCTAACACTTGGAANCCCCTGGAATGTCAAAAACCGCAACTACTTGTGCATACATAGTAGGCTACCCAAGGGAGGCACGCGGACCTATCTCCCGGAGCTANCGCACTCGGGGCCACCGAACCGACAACCCGGCCCCAAGACCANAATAGCGCCANACCAAACGGGGCAAAACGGTAGCGTATAGNAACGGGCCCCTTGCGGGGAGACCTTGGGCTNNGCACAGCTGGGGAACAGAACCAGATGGCGGAACTNNNTACCCGCGACAAANTTGGGGGCACCCCACATTTAAAAAAGTTNCATATGGTAGTTCAACGNAAGACGGTATACTACACTTGGGNTACGNTATCTCAANGNCAATTATCACTAAAACGATCAACCCCTCTACNTTTGGTTTCCCCCCACAATCAACATGAGGGCCTTNTAGGTCGAAGACCAAGCCAAATTNGGCTCAGTACCCCTTCCGGGNAGNGGCTCACACAAACTNGGGCTGCAAGACNCTCAAAACCCCCCACCACCCCGANATTCTCCCACACCAATCTCGGACGCCNCAAAAGNTANNCTCCATCACGGGACANACACACACACACACNTACGTGTA]
[+] EMBL AL695559 [CCGAGGTTAATNGTGCTGAGCAGGTGTGAGCCGCCGCGCGGCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATACACACCCCAGNGCTCGGGCTCGTACCTACGTACCACCGGTCTACCGGCGAAGTGAAACGAACAAAACCCATAGCTACAACGAGCACCGGGATACTTGGTCAACAATCACCACCAGCACAGCCACATGTGCTGACCTGGCCAGCTGGAATGCTGCTATACCCGAGCCATGGCTGTGCTGCTGCCCTGCACAGGGCAAGAAGAAAACTGGGCACATTCGATACTGGGCTGCTGGTCACAATCATAAAACCCCAGACCCGAAACTGTGCTACGGCGCCAGNTACCCGTACGGTAGCCCAAGCTNGGCAGCNGCCTGGCCGGNTTGCCCCGCAATNGGAATATTGCAATTTCTTGTAACCCTAACACTTGGAANCCCCTGGAATGTCAAAAACCGCAACTACTTGTGCATACATAGTAGGCTACCCAAGGGAGGCACGCGGACCTATCTCCCGGAGCTANCGCACTCGGGGCCACCGAACCGACAACCCGGCCCCAAGACCANAATAGCGCCANACCAAACGGGGCAAAACGGTAGCGTATAGNAACGGGCCCCTTGCGGGGAGACCTTGGGCTNNGCACAGCTGGGGAACAGAACCAGATGGCGGAACTNNNTACCCGCGACAAANTTGGGGGCACCCCACATTTAAAAAAGTTNCATATGGTAGTTCAACGNAAGACGGTATACTACACTTGGGNTACGNTATCTCAANGNCAATTATCACTAAAACGATCAACCCCTCTACNTTTGGTTTCCCCCCACAATCAACATGAGGGCCTTNTAGGTCGAAGACCAAGCCAAATTNGGCTCAGTACCCCTTCCGGGNAGNGGCTCACACAAACTNGGGCTGCAAGACNCTCAAAACCCCCCACCACCCCGANATTCTCCCACACCAATCTCGGACGCCNCAAAAGNTANNCTCCATCACGGGACANACACACACACACACNTACGTGTA]
consensusID : consensus_5206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 890 fasta sequence
[CCGACGTCGCGCAACTCCCGGCAGTCGGATTTCGATAGCTACGAGGACGAGCAGTTGCAGCGGGAGCAGGAGCAGAGCAGTAACGTTAGCAGGCGCATCTCCAGCAAAAACCAGGACGGTATCGGGTGTTACGAAACGTGGAACTACGTCTACCAAAACTTGGAAAAGCAGGGCTACTCGAAGGATTTGGGCGAGCGGGGTGACTTTCTGGCGGACGAACTGGACGCCGATGATAATCATCTGATCGGTACGGCGGCGGAGGAGGACGACCTCCGACGAAGGCGTCGTAATGACCTGATGACGGACGACCATCATGACCATCATCATCATCATCATTCGGGCAGAAGAGAGTCCGGCAACGCTTCCTCTAGCGCGACGCTACGCCGCAACCACAACGAAAAGCTGAAAGCGATGAAACCGAAAGCGGCCGACAAGATCGACGGCATAGTCCGGCAGTCTTCGGCAGGGCTTTCCTCCACGAAGCAACCGATGGCCGAGGGGCGACGGCACGAGCGCCACCCTTCCACCGGTTCGGGGGTAACCGCCACCACCATGCTGGTACAGAAGGCGGCGAAAATGTCGCTCTCAAACAACGCGACGAACGACGATCTGCTGCTGGGAAGTTTCGAGCAGAATGGTGCGAGCAAGGGTGAGCCGCCCGCCGCCGGCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATCACACCCCAGGGCTCGGGCTCGTCCTCGTCCACCGGTCTACCGGCGAAGGAAACGAACAAAACCCATAGCTCAACGAGCACCGGGATACTGGTCAACAATCACCACCACAGCCACAGCGCGATCAGCAGCGGAAGCGCTTACCCGAGCCATGGCGGCGCGCCCGCACAGGGCAAGAAGAAAACGGC]
[+] EMBL BM619255 [CCGACGTCGCGCAACTCCCGGCAGTCGGATTTCGATAGCTACGAGGACGAGCAGTTGCAGCGGGAGCAGGAGCAGAGCAGTAACGTTAGCAGGCGCATCTCCAGCAAAAACCAGGACGGTATCGGGTGTTACGAAACGTGGAACTACGTCTACCAAAACTTGGAAAAGCAGGGCTACTCGAAGGATTTGGGCGAGCGGGGTGACTTTCTGGCGGACGAACTGGACGCCGATGATAATCATCTGATCGGTACGGCGGCGGAGGAGGACGACCTCCGACGAAGGCGTCGTAATGACCTGATGACGGACGACCATCATGACCATCATCATCATCATCATTCGGGCAGAAGAGAGTCCGGCAACGCTTCCTCTAGCGCGACGCTACGCCGCAACCACAACGAAAAGCTGAAAGCGATGAAACCGAAAGCGGCCGACAAGATCGACGGCATAGTCCGGCAGTCTTCGGCAGGGCTTTCCTCCACGAAGCAACCGATGGCCGAGGGGCGACGGCACGAGCGCCACCCTTCCACCGGTTCGGGGGTAACCGCCACCACCATGCTGGTACAGAAGGCGGCGAAAATGTCGCTCTCAAACAACGCGACGAACGACGATCTGCTGCTGGGAAGTTTCGAGCAGAATGGTGCGAGCAAGGGTGAGCCGCCCGCCGCCGGCAGCAGTCGGAGAAATTCGGTGACG ]
[+] EMBL BM649666 [ ccGGTGACTTTCTGGCGGACGAACTGGACGCCGATGATAATCATCTGATCGGTACGGCGGCGGAGGAGGACGACCTCCGACGAAGGCGTCGTAATGACCTGATGACGGACGACCATCATGACCATCATCATCATCATCATTCGGGCAGAAGAGAGTCCGGCAACGCTTCCTCTAGCGCGACGCTACGCCGCAACCACAACGAAAAGCTGAAAGCGATGAAACCGAAAGCGGCCGACAAGATCGACGGCATAGTCCGGCAGTCTTCGGCAGGGCTTTCCTCCACGAAGCAACCGATGGCCGAGGGGCGACGGCACGAGCGCCACCCTTCCACCGGTTCGGGGGTAACCGCCACCACCATGCTGGTACAGAAGGCGGCGAAAATGTCGCTCTCAAACAACGCGACGAACGACGATCTGCTGCTGGGAAGTTTCGAGCAGAATGGTGCGAGCAAGGGTGAGCCGCCCGCCGCCGGCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATCACACCCCAGGGCTCGGGCTCGTCCTCGTCCACCGGTCTACCGGCGAAGGAAACGAACAAAACCCATAGCTCAACGAGCACCGGGATACTGGTCAACAATCACCACCACAGCCACAGCGCGATCAGCAGCGGAAGCGCTTACCCGAGCCATGGCGGCGCGCCCGCACAGGGCAAGAAGAAAACGGC]
consensusID : consensus_5206#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[CCGCGGACGCGTGGGCAGAATGGTGCGAGCAAGGGTGAGCCGCCCGCCGCCGGCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATCACACCCCAGGGCTCGGGCTCGTCCTCGTCCACCGGTCTACCGGCGAAGGAAACGAACAAAACCCATAGCTCAACGAGCACCGGGATACTGGTCAACAATCACCACCACAGCCACAGCGCGATCAGCAGCGGAAGCGCTTACCCGAGCCATGGCGGCGCGCCCGCACAGGGCAAGAAGAAAACGGCCACATTTGATACGGGCGCGGTCACAATCATAAACCCCAGCCCGACCGGCTCGGGCAGTCCGTCGGGCAGTGGAGCGCCGGCCGGTGCCGAATGGAATTGCAATTTCTGTACCTACCTGAACCCGGATGTCAAACGCATCTGTGATATGTGCTCCAAGAGCCGCGACTTTCGACTCGATGGCACGACGACCGCCAGCAATGGCACAACGGCAACGTGCGTTTGAACGCCTGCGGGGCTGCTGAAGCGGCAAGAAGGGACTTCGGAATGGGCCCACTAAATTGTTAGAAGTTTTGTCTTTTTTTAAATCCTCTGTCCATTTGGCTGGACTTTGTTCCTGTGTCTTTGTTCTTCACCCTGTTTAATGGACTATATTT]
[+] EMBL BM592160 [CCGCGGACGCGTGGGCAGAATGGTGCGAGCAAGGGTGAGCCGCCCGCCGCCGGCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATCACACCCCAGGGCTCGGGCTCGTCCTCGTCCACCGGTCTACCGGCGAAGGAAACGAACAAAACCCATAGCTCAACGAGCACCGGGATACTGGTCAACAATCACCACCACAGCCACAGCGCGATCAGCAGCGGAAGCGCTTACCCGAGCCATGGCGGCGCGCCCGCACAGGGCAAGAAGAAAACGGCCACATTTGATACGGGCGCGGTCACAATCATAAACCCCAGCCCGACCGGCTCGGGCAGTCCGTCGGGCAGTGGAGCGCCGGCCGGTGCCGAATGGAATTGCAATTTCTGTACCTACCTGAACCCGGATGTCAAACGCATCTGTGATATGTGCTCCAAGAGCCGCGACTTTCGACTCGATGGCACGACGACCGCCAGCAATGGCACAACGGCAACGTGCGTTTGAACGCCTGCGGGGCTGCTGAAGCGGCAAGAAGGGACTTCGGAATGGGCCCACTAAATTGTTAGAAGTTTTGTCTTTTTTTAAATCCTCTGTCCATTTGGCTGGACTTTGTTCCTGTGTCTTTGTTCTTCACCCTGTTTAATGGACTATATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5206#0 ----------CCGAGGTTAATNGTGCTGAGCAGGTGTGAGCCGCCG--CGC-GGCAGCAG 47
consensus_5206#2 CCGCGGACGCGTGGGCAGAATGGTGC-GAGCAAGGGTGAGCCGCCCGCCGCCGGCAGCAG 59
consensus_5206#1 -------------------CCGACGTCGCGCAACTCCCGGCAGTCGGATTTCGATAGCTA 41
* * *** ** * * * ***
consensus_5206#0 TCGGAGAAATTCGGTGACGAAGAAACAAATACACACCC-CAGNGCT--CGGGCTCGTACC 104
consensus_5206#2 TCGGAGAAATTCGGTGACGAAGAAACAAAT-CACACCC-CAGGGCT--CGGGCTCGTCCT 115
consensus_5206#1 CGAGGACGAGCAGTTGCAGCGGGAGCAGGAGCAGAGCAGTAACGTTAGCAGGCGCATCTC 101
* * * ** * * * ** ** * * * * * * *** * *
consensus_5206#0 TACGTACCACCGGTCTACCGGCGAAGTGAAACGAACAAAACCCATAGCTACAACGAGCAC 164
consensus_5206#2 CGT---CCACCGGTCTACCGGCGAAG-GAAACGAACAAAACCCATAGCT-CAACGAGCAC 170
consensus_5206#1 CAGCAAAAACCAGGACGGTATCGG-GTGTTACGAAACGTGGAACTACGTCTACCAAAACT 160
*** * ** * * ***** ** * * * *
consensus_5206#0 CGGGATACTTGGTCAACAATCACCACCAGCACAGCCACATGTGCTGACCTGGCCAGCTGG 224
consensus_5206#2 CGGGATACT-GGTCAACAATCACCACCA---CAGCCACA-GCGC-GATCAG--CAGCGGA 222
consensus_5206#1 TGGAAAAGCAGGGCTACTCGAAGGATT----TGGGCGAGCGGGGTGACTTT-CTGGCGGA 215
** * * ** * ** * * * * * * ** ** *
consensus_5206#0 AATGCTGCTATACCCGAGCCATGGCTGTGCTGCTGCCCTGCACAGGGCAAGAAGAAAACT 284
consensus_5206#2 AGCGCT----TACCCGAGCCATGGCGGCGCG-----CCCGCACAGGGCAAGAAGAAAAC- 272
consensus_5206#1 CGAACTG---GACGCCGATGATAATCATCTGA----TCGGTACGGCGGCGGAGGAGGAC- 267
** ** * ** * * ** * * ** ** **
consensus_5206#0 GGGCACATTCGATACTGGGCTGCTGGTCAC--AATCATAAAACCCCAGACCCGAAACTGT 342
consensus_5206#2 GGCCACATTTGATAC-GGGC--GCGGTCAC--AATCATAAA-CCCCAG-CCCGA------ 319
consensus_5206#1 ---GACCTCCGACGAAGGCGTCGTAATGACCTGATGACGGACGACCAT-CATGACCATCA 323
** * ** ** * ** ** * * *** * **
consensus_5206#0 GCTACGGCGCCAGNTACCCGTACGGTAGCCCAAGCTNGGCAGCNGCCTGGCCGGN-TTGC 401
consensus_5206#2 ---------CCGGCT---CG---GGCAGTCC--GTCGGGCAGTGGAGCG-CCGGC-CGGT 360
consensus_5206#1 TCATCATCATCATTCGGGCAGAAGAGAGTCCG-GCAACGCTTCCTCTAGCGCGACGCTAC 382
* * * ** ** * ** * **
consensus_5206#0 CCCGCAATNGGAATATTGCAATTTCTTGTAACCCTAACACTTGGAANCCCCTGGAATGTC 461
consensus_5206#2 GCCG-AATGGAA---TTGCAATTTCT-GTACCT-----ACCTGAACCC-----GGATGTC 405
consensus_5206#1 GCCGCAACCACAA----CGAAAAGCTGAAAGCGATGAAACCGAAAGCGGCCGACAAGATC 438
*** ** * ** ** * * ** * * **
consensus_5206#0 AAAAACCGCAACTACTTGTGCATACATAGTAGGCTACCCAAGGGAGGCACGCGGACCTAT 521
consensus_5206#2 AAA---------------CGCATCTGTGATATGTGCTCCAAGAGCCGC-----GACTTTC 445
consensus_5206#1 GACGGCAT--AGTCCGGCAGTCTTCGGCAGGGCTTTCCTCCACGAAGC-----AACCGAT 491
* * * * * ** **
consensus_5206#0 CTCCCGGAGCTANCGCACTCGGGGCCACCGAACCGACAACCCGGCCCCAAG-ACCANAAT 580
consensus_5206#2 GACTCGATGGCACGACGACCGCCAGCAATGGCACAACGGCAACGTGC-----GTTTGAAC 500
consensus_5206#1 GGCCGAGGGGCGACGGCACGAGCGCCACCCTTCCACCGGTTCGGGGGTAACCGCCACCAC 551
* * ** * * * *
consensus_5206#0 AGCGCCANACCAAACGG-GGCAAAACGGTAGCGTATAGN-AACGGGCCCCTTG---CGGG 635
consensus_5206#2 GCCTGCGGGGCTGCTGA-AGCGGCAAGAAGGGACTTCGG-AATGGGCCCACTAAATTGTT 558
consensus_5206#1 CATGCTGGTACAGAAGGCGGCGAAAATGTCGCTCTCAAACAACGCGACGAACGA--CGAT 609
* * ** * * ** * * * *
consensus_5206#0 GAGACCTTGGGCTNNGCACAGCTGGGGAACAGAACCAGATGGCGGAACTNNNTACCCGCG 695
consensus_5206#2 AGAAGTTTTGTCTTTTTTTAAATCC----TCTGTCCATTTGGCTGGACTTTGTTCCTGTG 614
consensus_5206#1 CTGCTGCTGGGAAGTTTCGAGCAGAATGGTGCGAGCAA--GGGTGAGCCGCCCGCCGCCG 667
* * * ** ** * * ** *
consensus_5206#0 ACAAANTTGGGGGCACCCCACATTTAAAAAAGTTNCATATGGTAGTTCAACGNAAGACGG 755
consensus_5206#2 TCTTTGTT-----CTTCACCCTGTTTAATGGACTATATTT-------------------- 649
consensus_5206#1 GCAGCAGTCGGAGAAATTCGGTGACGAAGAAACAAATCACACCCCAGGGCTCGGGCTCGT 727
* * * **
consensus_5206#0 TATACTACACTTGGGNTACGNTATCTCAANGNCAATTATCACTAAAACGATCAACCCCTC 815
consensus_5206#2 ------------------------------------------------------------
consensus_5206#1 CCTCGTCCACCGGTCTACCGGCGAAGGAAACGAACAAAACCCATAGCTCAACGAGCACCG 787
consensus_5206#0 TACNTTTGGTTTCCCCCCACAATCAACATGAGGGCCTTNTAGGTCGAAGACCAAGCCAAA 875
consensus_5206#2 ------------------------------------------------------------
consensus_5206#1 GGATACTGGTCAACAATCACCACCACAGCCACAGCGCGATCAGCAGCGGAAGCGCTTACC 847
consensus_5206#0 TTNGGCTCAGTACCCCTTCCGGGNAGNGGCTCACACAAACTNGGGCTGCAAGACNCTCAA 935
consensus_5206#2 ------------------------------------------------------------
consensus_5206#1 CGAGCCATGGCGGCGCGCCCGCACAGGGCAAGAAGAAAACGGC----------------- 890
consensus_5206#0 AACCCCCCACCACCCCGANATTCTCCCACACCAATCTCGGACGCCNCAAAAGNTANNCTC 995
consensus_5206#2 ------------------------------------------------------------
consensus_5206#1 ------------------------------------------------------------
consensus_5206#0 CATCACGGGACANACACACACACACACNTACGTGTA 1031
consensus_5206#2 ------------------------------------
consensus_5206#1 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||