cluster # 5227

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Anopheles gambiae
cluster # 5227 cluster # 5227 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5227#0 length = 705 sequences # 2

consensus_5227#1 length = 644 sequences # 1
consensus_5227#2 length = 464 sequences # 1

consensusID : consensus_5227#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 705
fasta sequence

                              [CCGCGGACGCGTGGGAGGATTTTACATTGCACTCGGTTTGTTTGGCGTAAAGACGGTTGTCTTCTGCGCACCGACGACTCTTGCTTCAATTCGGTGCCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGCGACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTGCTCGATTCGGTGCGACACCAAAACCGATTCCGCACGGTGGTTCCTGTCCGTTGCCACGGTTCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTTGCCACATTACGTAAGGAGAAGTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGAGGCCACCGTTGATAACACTGCGCCCCACACCCGCAAGAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACACTCCCGAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGA-GTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAGACGGCCATCCATCAACGAAGCGGAAACGATTGGCGTTC-GGGCGAAACGGCTGTGGCACGACCACCGAACGACGGCACGAGCGCACCA]

[+] EMBL BM590898             [CCGCGGACGCGTGGGAGGATTTTACATTGCACTCGGTTTGTTTGGCGTAAAGACGGTTGTCTTCTGCGCACCGACGACTCTTGCTTCAATTCGGTGCCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGCGACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTGCTCGATTCGGTGCGACACCAAAACCGATTCCGCACGGTGGTTCCTGTCCGTTGCCACGGTTCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTTGCCACATTACGTAAGGAGAAGTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGAGGCCACCGTTGATAACACTGCGCCCCACACCCGCAAGAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACACTCCCGAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGA GTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAGACGGCCATCCATCAACGAAGCGGAAACGATTGGCGTTC GGGCGAAACGGCTGTGGCACGACCACCGAACGACGGCACG         ]
[+] EMBL BM605817             [                                                                                              ccgCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGCGACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTGCTCGATTCGGTGCGACACCAAAACCGATTCCGCACGGTGGTTCCTGTCCGTTGCCACGGTTCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTTGCCACATTACGTAAGGAGAAGTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGAGGCCACCGTTGATAACACTGCGCCCCACACCCGCAAGAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACACTCCCGAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGACGTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAGACGGCCATCCATCAACGAAGCGGAAACGATTGGCGTTCGGGGCGAAACGGCTGTGGCACGACCACCGAACGACGGCACGAGCGCACCA]




>consensus_5227#0
CCGCGGACGCGTGGGAGGATTTTACATTGCACTCGGTTTGTTTGGCGTAAAGACGGTTGT
CTTCTGCGCACCGACGACTCTTGCTTCAATTCGGTGCCAGTTTCCTACACACTGCCCACA
CGCCAGTCGGTCGGACGGATTAGCCAACGGGGGCGACTCTTCGGTAGGCAGTCGTCGTAG
GAGAGGAGTGCAATCGCAGCGATTACTCGACTTGCTCGATTCGGTGCGACACCAAAACCG
ATTCCGCACGGTGGTTCCTGTCCGTTGCCACGGTTCGCATTGATTTGTGATCGACTCCTG
TCCCATTATCCTTGCCACATTACGTAAGGAGAAGTGCTGCGAGGACACAGCCTGCGGAGG
GGGGAAAAGGTAACGAGGCCACCGTTGATAACACTGCGCCCCACACCCGCAAGAAGAGGA
GTAGGAAGAGGCCGCTGGTGAGGAAGTACACTCCCGAGTCGGTTGGATGTTTGGTTGATG
AAAGTGGTGGCAAATATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGAGAG
CAGCGCAAGTGTGGAGTGGCAGTGGAGTGGTAGTTCCACCGTACGCAGCTTGTTAGCACA
GGTGATCACACATCACAGACGGCCATCCATCAACGAAGCGGAAACGATTGGCGTTCGGGC
GAAACGGCTGTGGCACGACCACCGAACGACGGCACGAGCGCACCA

consensusID : consensus_5227#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCGAGAAAAGAAAAAGCAAAGTGATTTCTATTCCATTGTGTAGGATTTTACATTGCACTCGGTTTGTTTGGCGTAAAGACGGTTGTCTTCTGCGCACCGACGACTCTTGCTTCAATTCGGTGCCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGCGACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTGCTCGATTCGGTGCGACACCAAAACCGATTCTGCACGGTGGTTCCTGTCCGTTGCCACGGTTCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTTGCCACATTACGTAAGGAGAAGTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGAGGCCACCGTTGATAACACTGCGCCCCACACCCGCAAGAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACACTCCCTAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGCGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAG]

[+] EMBL BM606316             [CCGAGAAAAGAAAAAGCAAAGTGATTTCTATTCCATTGTGTAGGATTTTACATTGCACTCGGTTTGTTTGGCGTAAAGACGGTTGTCTTCTGCGCACCGACGACTCTTGCTTCAATTCGGTGCCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGCGACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTGCTCGATTCGGTGCGACACCAAAACCGATTCTGCACGGTGGTTCCTGTCCGTTGCCACGGTTCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTTGCCACATTACGTAAGGAGAAGTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGAGGCCACCGTTGATAACACTGCGCCCCACACCCGCAAGAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACACTCCCTAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGCGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAG]




>consensus_5227#1
CCGAGAAAAGAAAAAGCAAAGTGATTTCTATTCCATTGTGTAGGATTTTACATTGCACTC
GGTTTGTTTGGCGTAAAGACGGTTGTCTTCTGCGCACCGACGACTCTTGCTTCAATTCGG
TGCCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGC
GACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTG
CTCGATTCGGTGCGACACCAAAACCGATTCTGCACGGTGGTTCCTGTCCGTTGCCACGGT
TCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTTGCCACATTACGTAAGGAGAAG
TGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGAGGCCACCGTTGATAACAC
TGCGCCCCACACCCGCAAGAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACACTCC
CTAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTCAAT
CCGCCCTTCTGTTGGCCAGAAGCGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGGTAGT
TCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAG

consensusID : consensus_5227#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [CCAGGTTTTCACGTTGATACACTGCGCCCACACCGAGTTGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAACATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAGACGGCCATCCATCAAACGAAGCGGAAACGATTGGCGTTCGGGCGAAACGGCTGTGGCACGACCACCGAACGACGGCCACGAGCGCACCAGACACCANCAGCATGGATAACGATGGGCTGTCGAACGAGCAGACGGAAAAGGTGCTCCAGTTCCAGGACATTACCGGGCTTGGCACCGATATGAACGTGTGCCGCCGACATACTGATCCGCCACCAGGTGGGACCTGGAGATCGCCTTTCACGCGANGCATTTAAAACATACGCGAGGG]

[+] EMBL AL695793             [CCAGGTTTTCACGTTGATACACTGCGCCCACACCGAGTTGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAACATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAGACGGCCATCCATCAAACGAAGCGGAAACGATTGGCGTTCGGGCGAAACGGCTGTGGCACGACCACCGAACGACGGCCACGAGCGCACCAGACACCANCAGCATGGATAACGATGGGCTGTCGAACGAGCAGACGGAAAAGGTGCTCCAGTTCCAGGACATTACCGGGCTTGGCACCGATATGAACGTGTGCCGCCGACATACTGATCCGCCACCAGGTGGGACCTGGAGATCGCCTTTCACGCGANGCATTTAAAACATACGCGAGGG]




>consensus_5227#2
CCAGGTTTTCACGTTGATACACTGCGCCCACACCGAGTTGTTGGATGTTTGGTTGATGAA
AGTGGTGGCAAACATTGCTCCAACCCGTCAATCCGCCCTTCTGTTGGCCAGAAGAGAGCA
GCGCAAGTGTGGAGTGGCAGTGGAGTGGTAGTTCCACCGTACGCAGCTTGTTAGCACAGG
TGATCACACATCACAGACGGCCATCCATCAAACGAAGCGGAAACGATTGGCGTTCGGGCG
AAACGGCTGTGGCACGACCACCGAACGACGGCCACGAGCGCACCAGACACCANCAGCATG
GATAACGATGGGCTGTCGAACGAGCAGACGGAAAAGGTGCTCCAGTTCCAGGACATTACC
GGGCTTGGCACCGATATGAACGTGTGCCGCCGACATACTGATCCGCCACCAGGTGGGACC
TGGAGATCGCCTTTCACGCGANGCATTTAAAACATACGCGAGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5227#0      --------------------------CCGCGGACGCGTGGGAGGATTTTACATTGCACTC 34
consensus_5227#1      CCGAGAAAAGAAAAAGCAAAGTGATTTCTATTCCATTGTGTAGGATTTTACATTGCACTC 60
consensus_5227#2      ------------------------------------------------------------
                                                                                  

consensus_5227#0      GGTTTGTTTGGCGTAAAGACGGTTGTCTTCTGCGCACCGACGACTCTTGCTTCAATTCGG 94
consensus_5227#1      GGTTTGTTTGGCGTAAAGACGGTTGTCTTCTGCGCACCGACGACTCTTGCTTCAATTCGG 120
consensus_5227#2      -------------------------------------------------------CCAGG 5
                                                                                **

consensus_5227#0      TGCCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGC 154
consensus_5227#1      TGCCAGTTTCCTACACACTGCCCACACGCCAGTCGGTCGGACGGATTAGCCAACGGGGGC 180
consensus_5227#2      TTTTCACGTTG-ATACACTGCGCCCACACCGAGTTGTTGGATGT-TTGGTTGATGAAAGT 63
                      *       *   * ******* * *** **     ** *** *  ** *   * *   * 

consensus_5227#0      GACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTG 214
consensus_5227#1      GACTCTTCGGTAGGCAGTCGTCGTAGGAGAGGAGTGCAATCGCAGCGATTACTCGACTTG 240
consensus_5227#2      GG-----TGGCAAACATTGCTCCAACCCG------TCAATC-CGCCCTTCTGTTGGCCAG 111
                      *       ** *  ** *  **  *   *       ***** *  *  *   * * *  *

consensus_5227#0      CTCGATTCGGTGCGACACCAAAACCGATTCCGCACGGTGGTTCCTGTCCGTTGCCACGGT 274
consensus_5227#1      CTCGATTCGGTGCGACACCAAAACCGATTCTGCACGGTGGTTCCTGTCCGTTGCCACGGT 300
consensus_5227#2      AAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGGTAGTTCCA--CCGT--ACGCAGC 167
                             * * ** *      *   *     *   *** *****   ****   * * * 

consensus_5227#0      TCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTT-GCCACATTACGTAAGGAGAA 333
consensus_5227#1      TCGCATTGATTTGTGATCGACTCCTGTCCCATTATCCTT-GCCACATTACGTAAGGAGAA 359
consensus_5227#2      TTGTTAGCACAGGTGATC-ACACATCACAGACGGCCATCCATCAAACGAAGCGGAAACGA 226
                      * *     *   ****** ** * *  *  *    * *    ** *  * *     *  *

consensus_5227#0      GTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGA-GGCCACCGTTGATAAC 392
consensus_5227#1      GTGCTGCGAGGACACAGCCTGCGGAGGGGGGAAAAGGTAACGA-GGCCACCGTTGATAAC 418
consensus_5227#2      TTGGCGTTCGGGCGAAACG-GCTGTGGCACGACCACCGAACGACGGCCACGAGCGCACCA 285
                       **  *   ** *  * *  ** * **   **  *   ***** ******    *     

consensus_5227#0      ACTGCGCCCCACACCCGCAA-GAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACAC 451
consensus_5227#1      ACTGCGCCCCACACCCGCAA-GAAGAGGAGTAGGAAGAGGCCGCTGGTGAGGAAGTACAC 477
consensus_5227#2      GACACCANCAGCATGGATAACGATGGGCTGTCGAACGAGCAGACGGAAAAGGTGCTCCAG 345
                          *   *  **     ** ** * *  ** * * ***    * *   ***   * ** 

consensus_5227#0      TCCCGAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTC 511
consensus_5227#1      TCCCTAGTCGGTTGGATGTTTGGTTGATGAAAGTGGTGGCAAATATTGCTCCAACCCGTC 537
consensus_5227#2      TTCCAGGACATTACCGGGCTTGGC--ACCGATATGA----ACGTGTGCCGCCGACATACT 399
                      * **  * *  *     * ****   *   *  **     *  * *  * ** **     

consensus_5227#0      AATCCGCCCTTCTGTTGG-CCAGAAGAGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGG 570
consensus_5227#1      AATCCGCCCTTCTGTTGG-CCAGAAGCGAGCAGCGCAAGTGTGGAGTGGCAGTGGAGTGG 596
consensus_5227#2      GATCCGCCACCAGGTGGGACCTGGAGATCGCCTTTCACGCGANGCATTTAAAACATACGC 459
                       *******     ** ** ** * **   **    ** * *  *  *   *       * 

consensus_5227#0      TAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAGACGGCCATCCAT 630
consensus_5227#1      TAGTTCCACCGTACGCAGCTTGTTAGCACAGGTGATCACACATCACAG------------ 644
consensus_5227#2      GAGGG------------------------------------------------------- 464
                       **                                                         

consensus_5227#0      CAACGAAGCGGAAACGATTGGCGTTCGGGCGAAACGGCTGTGGCACGACCACCGAACGAC 690
consensus_5227#1      ------------------------------------------------------------
consensus_5227#2      ------------------------------------------------------------
                                                                                  

consensus_5227#0      GGCACGAGCGCACCA 705
consensus_5227#1      ---------------
consensus_5227#2      ---------------