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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 846 fasta sequence
[CCGCGAACGAACAGGAATCCCCTGAACAAAGGGCATAGGTTCTTAAGCGCGGTTCTCGCTCCCTATAGCAAGAGCTAATGCACCAAACGCGAGTGCATACGAATTTTGCGCCCTGGTGTGTGCCGGAAACCGCACGAACCTGTGAGGAACCTCTGGGATCTTCCAATGTTCTAGCATGAAAAGGGCGGGGAGTCACCCCCGTCACTGCAAACAAAATGCCTTCTGTAAACTGTGATCGAATCTCTCGTGTTCCTTATTCAATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGACTTTTTGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTAGTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGTGCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAAACATCTTTTCTTTAAAGTATTCCAGCGGCCTGTGAGCTAAACGTGTGTGTGTGTAGATCGAAACGTCCTGCATAAATTGCAACATATTTTCCCGGACTGAGCAGAGAAACTCGGGAAAAGGATGGACAATTTAGAGAGCGCGAGAGAGCGTTGGCGCACGTTGTTCTGTCGAGGCAGATTGAACCGGCAGACTGAAGCGATTCGAATACGCACTCTTTTTTAAGTATACAATGTGTAGGCTACAATCCTAATACGAATGAACCCAC]
[+] EMBL BM617567 [CCGCGAACGAACAGGAATCCCCTGAACAAAGGGCATAGGTTCTTAAGCGCGGTTCTCGCTCCCTATAGCAAGAGCTAATGCACCAAACGCGAGTGCATACGAATTTTGCGCCCTGGTGTGTGCCGGAAACCGCACGAACCTGTGAGGAACCTCTGGGATCTTCCAATGTTCTAGCATGAAAAGGGCGGGGAGTCACCCCCGTCACTGCAAACAAAATGCCTTCTGTAAACTGTGATCGAATCTCTCGTGTTCCTTATTCAATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGACTTTTTGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTAGTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGTGCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAA ]
[+] EMBL BM578013 [ ccgGTAAACTGTGATCGAATCTCTCGTGTTCCTTATTCAATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGACTTTTTGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTAGTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGTGCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAAACATCTTTTCTTTAAAGTATTCCAGCGGCCTGTGAGCTAAACGTGTGTGTGTGTAGATCGAAACGTCCTGCATAAATTGCAACATATTTTCCCGGACTGAGCAGAGAAACTCGGGAAAAGGATGGACAATTTAGAGAGCGCGAGAGAGCGTTGGCGCACGTTGTTCTGTCGAGGCAGATTGAACCGGCAGACTGAAGCGATTCGAATACGCACTCTTTTTTAAGTATACAATGTGTAGGCTACAATCCTAATACGAATGAACCCAC]
consensusID : consensus_5230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[AGCAGAATTCCCGAGGTTATGATCGAATTCTCGTGTTCTTATTCATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGACTTTTTGCTCACGGAGGCCAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTATATTTGCTTTGATCAAGTACTGATCTGTCAATGGTTAGGAATATCCATGGGTGCTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTAAGCCATTTAGTTGTANNACATCTTTTTCTTTAAAGTATTACCAGCGGGCCTGTGANCTAAAACGGTGTGTGTTGTGTACGATCGAAACGTNCTGCATAAATTTGCGACATATTTACCCGGACCTGAGCNGAGAAACATCGGGAAAANAGGATGGCAGCAATTTTAGAGAAGCGCGAGAGAAGCGTGGGNGCACGNTGTTCCTGTCNAGGCAGATNGAACCCGGCAGAATGAAGACCGATTCGAATAAAGCACNTCTCTATATAAAAGTATANCAACGATGTAGGGNCTACAATACCTAAATACAATGAACCACCACACCCTATGCTGCAACACACGATGAAAACGC]
[+] EMBL AL696128 [AGCAGAATTCCCGAGGTTATGATCGAATTCTCGTGTTCTTATTCATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGACTTTTTGCTCACGGAGGCCAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTATATTTGCTTTGATCAAGTACTGATCTGTCAATGGTTAGGAATATCCATGGGTGCTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTAAGCCATTTAGTTGTANNACATCTTTTTCTTTAAAGTATTACCAGCGGGCCTGTGANCTAAAACGGTGTGTGTTGTGTACGATCGAAACGTNCTGCATAAATTTGCGACATATTTACCCGGACCTGAGCNGAGAAACATCGGGAAAANAGGATGGCAGCAATTTTAGAGAAGCGCGAGAGAAGCGTGGGNGCACGNTGTTCCTGTCNAGGCAGATNGAACCCGGCAGAATGAAGACCGATTCGAATAAAGCACNTCTCTATATAAAAGTATANCAACGATGTAGGGNCTACAATACCTAAATACAATGAACCACCACACCCTATGCTGCAACACACGATGAAAACGC]
consensusID : consensus_5230#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[CCGCCCACGCGTCCGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTAGTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGTGCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAAACATCTTTTCTTTAAAGTATTCCAGCGGCCTGTGAGCTAAACGTGTGTGTGTGTAGATCGAAACGTCCTGCATAAATTGCAACATATTTTCCCGGACTGAGCAGAGAAACTCGGGAAAAGGATGGACAATTTAGAGAGCGCGAGAGAGCGTTGGCGCACGTTGTTCTGTCGAGGCAGATTGAACCGGCAGACTGAAGCGATTCGAATACGCACTCTTTTTTAAGTATACAATGTGTAGGCTACAATCCTAATACGAATGAACCCACCAACCCTTTGATGCAGACGACGATAGCAAAAACAAAAACACACACTGCATTAAAAGCAACATTCTCTTGCATC]
[+] EMBL BM619784 [CCGCCCACGCGTCCGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATGGACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTAGTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGTGCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAAACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAAACATCTTTTCTTTAAAGTATTCCAGCGGCCTGTGAGCTAAACGTGTGTGTGTGTAGATCGAAACGTCCTGCATAAATTGCAACATATTTTCCCGGACTGAGCAGAGAAACTCGGGAAAAGGATGGACAATTTAGAGAGCGCGAGAGAGCGTTGGCGCACGTTGTTCTGTCGAGGCAGATTGAACCGGCAGACTGAAGCGATTCGAATACGCACTCTTTTTTAAGTATACAATGTGTAGGCTACAATCCTAATACGAATGAACCCACCAACCCTTTGATGCAGACGACGATAGCAAAAACAAAAACACACACTGCATTAAAAGCAACATTCTCTTGCATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5230#0 CCGCGAACGAACAGGAATCCCCTGAACAAAGGGCATAGGTTCTTAAGCGCGGTTCTCGCT 60
consensus_5230#2 ------------------------------------------------------------
consensus_5230#1 ------------------------------------------------------------
consensus_5230#0 CCCTATAGCAAGAGCTAATGCACCAAACGCGAGTGCATACGAATTTTGCGCCCTGGTGTG 120
consensus_5230#2 ------------------------------------------------------------
consensus_5230#1 ------------------------------------------------------------
consensus_5230#0 TGCCGGAAACCGCACGAACCTGTGAGGAACCTCTGGGATCTTCCAATGTTCTAGCATGAA 180
consensus_5230#2 ------------------------------------------------------------
consensus_5230#1 ------------------------------------------------------------
consensus_5230#0 AAGGGCGGGGAGTCACCCCCGTCACTGCAAACAAAATGCCTTCTGTAAACTGTGATCGAA 240
consensus_5230#2 ------------------------------------------------------------
consensus_5230#1 ---------------------------------AGCAGAATTCCCGAGGTTATGATCGAA 27
consensus_5230#0 TCTCTCGTGTTCCTTATTCAATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGA 300
consensus_5230#2 ------------------------------------------------CCGCCCACGCG- 11
consensus_5230#1 T-TCTCGTGTTCTTA--TTCATGCTACTCTCTCCGGACGAGCGCAGGACGACCCCAGGGA 84
* *** * *
consensus_5230#0 CTTTTTGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATG 360
consensus_5230#2 ---TCCGCTCACGGAGGCCAAAGTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATG 68
consensus_5230#1 CTTTTTGCTCACGGAGGCCAA-GTAATAAAAATGTATGCTGTGTGAGAGCGAAACACATG 143
* *************** **************************************
consensus_5230#0 GACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTA 420
consensus_5230#2 GACACACGCACACATGGCGAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTTTTTA 128
consensus_5230#1 GACACACGCACACATGG-GAGCAAAAAATTGCGTAAAAGAAAAATCTATTCTGCTT---- 198
***************** **************************************
consensus_5230#0 GTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGT 480
consensus_5230#2 GTATTTGCTTTGATCAATGTACTGATTCTGTTCAAATGGCTAAAGGAATATCCATTTTGT 188
consensus_5230#1 ATATTTGCTTTGATCAA-GTACTGAT-CTGTC--AATGGTTA--GGAATATCCATG---- 248
**************** ******** **** ***** ** ***********
consensus_5230#0 GCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAA 540
consensus_5230#2 GCAGTTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAA 248
consensus_5230#1 GGTGCTCTTATTGATGTTTATACAAGTATGCAAAAGAGACAAATGTTGGAAAGTTGTGAA 308
* * *******************************************************
consensus_5230#0 ACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAAACATCTTTT-CTTTAAAGTA 599
consensus_5230#2 ACTTTGAGCGCTCTACTGTATTTAGCCATTTAGTTGTAAAACATCTTTT-CTTTAAAGTA 307
consensus_5230#1 ACTTTGAGCGCTCTACTGTATTAAGCCATTTAGTTGTANNACATCTTTTTCTTTAAAGTA 368
********************** *************** ********* **********
consensus_5230#0 TT-CCAGCGG-CCTGTGAGCTAAAC--GTGTGTGT-GTGTA-GATCGAAACGTCCTGCAT 653
consensus_5230#2 TT-CCAGCGG-CCTGTGAGCTAAAC--GTGTGTGT-GTGTA-GATCGAAACGTCCTGCAT 361
consensus_5230#1 TTACCAGCGGGCCTGTGANCTAAAACGGTGTGTGTTGTGTACGATCGAAACGTNCTGCAT 428
** ******* ******* ***** ******** ***** *********** ******
consensus_5230#0 AAATT-GCAACATATTTTCCCGGAC-TGAGCAGAGAAAC-TCGGGAAAAG--GATGG--A 706
consensus_5230#2 AAATT-GCAACATATTTTCCCGGAC-TGAGCAGAGAAAC-TCGGGAAAAG--GATGG--A 414
consensus_5230#1 AAATTTGCGACATATTTACCCGGACCTGAGCNGAGAAACATCGGGAAAANAGGATGGCAG 488
***** ** ******** ******* ***** ******* ********* *****
consensus_5230#0 CAATTT-AGAGA-GCGCGAGAGA-GCGTTGGCGCACGTTGTTC-TGTCGAGGCAGATTGA 762
consensus_5230#2 CAATTT-AGAGA-GCGCGAGAGA-GCGTTGGCGCACGTTGTTC-TGTCGAGGCAGATTGA 470
consensus_5230#1 CAATTTTAGAGAAGCGCGAGAGAAGCGTGGGNGCACGNTGTTCCTGTCNAGGCAGATNGA 548
****** ***** ********** **** ** ***** ***** **** ******** **
consensus_5230#0 ACC-GGCAGACTGAAG--CGATTCGAATAC-GCACTCTTTTTTA----AGTATAC----A 810
consensus_5230#2 ACC-GGCAGACTGAAG--CGATTCGAATAC-GCACTCTTTTTTA----AGTATAC----A 518
consensus_5230#1 ACCCGGCAGAATGAAGACCGATTCGAATAAAGCACNTCTCTATATAAAAGTATANCAACG 608
*** ****** ***** *********** **** * * ** ******
consensus_5230#0 ATGTGTAGGCTACAAT-CCTAATACGAATGAACCCAC----------------------- 846
consensus_5230#2 ATGTGTAGGCTACAAT-CCTAATACGAATGAACCCACCAACCCTTTGATGCAGACGACGA 577
consensus_5230#1 ATGTAGGGNCTACAATACCTAAATACAATGAACCACCACACCCTATGCTGCAACACACGA 668
**** * ******* ***** ******** *
consensus_5230#0 --------------------------------------------------
consensus_5230#2 TAGCAAAAACAAAAACACACACTGCATTAAAAGCAACATTCTCTTGCATC 627
consensus_5230#1 TGAAAACGC----------------------------------------- 677
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||