cluster # 5231

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Anopheles gambiae
cluster # 5231 cluster # 5231 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5231#0 length = 662 sequences # 1

consensus_5231#1 length = 660 sequences # 2
consensus_5231#2 length = 545 sequences # 1

consensusID : consensus_5231#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [CCGCGGACGCGTGGGTGAGGACCAATCAGGCAATGCGATCTTTCTGCCAAAGAATGAAAAGCAAGCACTCCTCATGGGACTGACCCTGTACGAGAAGGGCAAAGCGGCAATGAAGGCGGACAGCTGCGAGGAAGCGCTGCTGCTGCTGCTGGAAGCGGACCACGACTTCCGGAACTGCAACTCCCAGCTGCTGAACGTGGTCGACAACTACGCACTGCTCAATCTCGACATTGTCTGGTGCTATCTAAGACTGAAGAACCTAAACCAACTGCCCGACGCGGAGGAGCGGCTGAAAGTGTGCGAGCTCAAGTTCCAGCAGAGCTACGGCAAAAACATGGCCCGCGTCGCGGCAATCCGTGGCGAACAGTCGAACGAGAAGATACTGCTCGTGCGGCTGCACCTGCTGAAAGCCGTCCTGTACTTCCACCAGAACAAGCGCGACGATGCGCGGACCATGTTCCGGGTGGTGGAAACGGAGCTGCTGAAGCTGCGCATCGACGACGACTGTCTGAGCCGGCTGATGGAGTGTGGGTACGGGATGAAGGAGTGCCGCATAGCGCTGCGCGCCTGCTCGAACGACGTGGAGGCAGCGATCGAGTTCATCCACAGCCAGCGCGAGACGCGCCGGGCGAACGAGCGCCGCTCGGAACGGGAACGCCAGT]

[+] EMBL BM596793             [CCGCGGACGCGTGGGTGAGGACCAATCAGGCAATGCGATCTTTCTGCCAAAGAATGAAAAGCAAGCACTCCTCATGGGACTGACCCTGTACGAGAAGGGCAAAGCGGCAATGAAGGCGGACAGCTGCGAGGAAGCGCTGCTGCTGCTGCTGGAAGCGGACCACGACTTCCGGAACTGCAACTCCCAGCTGCTGAACGTGGTCGACAACTACGCACTGCTCAATCTCGACATTGTCTGGTGCTATCTAAGACTGAAGAACCTAAACCAACTGCCCGACGCGGAGGAGCGGCTGAAAGTGTGCGAGCTCAAGTTCCAGCAGAGCTACGGCAAAAACATGGCCCGCGTCGCGGCAATCCGTGGCGAACAGTCGAACGAGAAGATACTGCTCGTGCGGCTGCACCTGCTGAAAGCCGTCCTGTACTTCCACCAGAACAAGCGCGACGATGCGCGGACCATGTTCCGGGTGGTGGAAACGGAGCTGCTGAAGCTGCGCATCGACGACGACTGTCTGAGCCGGCTGATGGAGTGTGGGTACGGGATGAAGGAGTGCCGCATAGCGCTGCGCGCCTGCTCGAACGACGTGGAGGCAGCGATCGAGTTCATCCACAGCCAGCGCGAGACGCGCCGGGCGAACGAGCGCCGCTCGGAACGGGAACGCCAGT]




>consensus_5231#0
CCGCGGACGCGTGGGTGAGGACCAATCAGGCAATGCGATCTTTCTGCCAAAGAATGAAAA
GCAAGCACTCCTCATGGGACTGACCCTGTACGAGAAGGGCAAAGCGGCAATGAAGGCGGA
CAGCTGCGAGGAAGCGCTGCTGCTGCTGCTGGAAGCGGACCACGACTTCCGGAACTGCAA
CTCCCAGCTGCTGAACGTGGTCGACAACTACGCACTGCTCAATCTCGACATTGTCTGGTG
CTATCTAAGACTGAAGAACCTAAACCAACTGCCCGACGCGGAGGAGCGGCTGAAAGTGTG
CGAGCTCAAGTTCCAGCAGAGCTACGGCAAAAACATGGCCCGCGTCGCGGCAATCCGTGG
CGAACAGTCGAACGAGAAGATACTGCTCGTGCGGCTGCACCTGCTGAAAGCCGTCCTGTA
CTTCCACCAGAACAAGCGCGACGATGCGCGGACCATGTTCCGGGTGGTGGAAACGGAGCT
GCTGAAGCTGCGCATCGACGACGACTGTCTGAGCCGGCTGATGGAGTGTGGGTACGGGAT
GAAGGAGTGCCGCATAGCGCTGCGCGCCTGCTCGAACGACGTGGAGGCAGCGATCGAGTT
CATCCACAGCCAGCGCGAGACGCGCCGGGCGAACGAGCGCCGCTCGGAACGGGAACGCCA
GT

consensusID : consensus_5231#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 660
fasta sequence

                              [CCGCCCACGCGTCCGAATTATTCAGCACAAAAAAGCACGAAAAATCCCCCGACAACCGGCAGCGGCACAGTTCCTTCTGCCATGTCCGGGTTAACCTGTCTTCCTGCCTGTTTCTGTTGAGTGATTCGAACATTCTCTTCACTTCGTTGGCTGTGTGTTTTTTTGTGAAGCGTATCAAAACAAAAAAGTCAATTCTACGCGTTCAACAGCGCGGTGTGCCATCGGACATCAATCACCATCACCACGCAAACCACAATGTCGTCCGAGTTACAGCACGAAAATCATCTCATTCAGCTGCGTGCAAAACTGAACGAGCGTAAAATTAAGCTATGGGAGGTGCCATACATGCAGGTGGAAGGTGATGAGCAGCGGCACAGCAACGGCGAAGAGATGCTCCGGCTGGCCGAACAGTTCGGTGCCGAGCTCGGTATTGCGACGGAGCTCTGCCTCCGGACGCTGACCGCACTGCAGCGGAATGCGCTGGACAAGCTGCAGTCGAAGGATGAGTTCCAGCGGACGGGCCTCGCGACGGTACGTGTCCGTGCACCGACCCAGACCGGTTCGAACCGGGCAGTTCGATCTGAAAGTGCAGGTCAC-GGAAACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGTCGCTCGATGCTCGGAAAAT]

[+] EMBL BM656287             [CCGCCCACGCGTCCGAATTATTCAGCACAAAAAAGCACGAAAAATCCCCCGACAACCGGCAGCGGCACAGTTCCTTCTGCCATGTCCGGGTTAACCTGTCTTCCTGCCTGTTTCTGTTGAGTGATTCGAACATTCTCTTCACTTCGTTGGCTGTGTGTTTTTTTGTGAAGCGTATCAAAACAAAAAAGTCAATTCTACGCGTTCAACAGCGCGGTGTGCCATCGGACATCAATCACCATCACCACGCAAACCACAATGTCGTCCGAGTTACAGCACGAAAATCATCTCATTCAGCTGCGTGCAAAACTGAACGAGCGTAAAATTAAGCTATGGGAGGTGCCATACATGCAGGTGGAAGGTGATGAGCAGCGGCACAGCAACGGCGAAGAGATGCTCCGGCTGGCCGAACAGTTCGGTGCCGAGCTCGGTATTGCGACGGAGCTCTGCCTCCGGACGCTGACCGCACTGCAGCGGAATGCGCTGGACAAGCTGCAGTCGAAGGATGAGTTCCAGCGGACGGGCCTCGCGACGGTACGTGTCCGTGCACCGACCCAGACCGGTTCGAACCGGGCAGTTCGATCTGAAAGTGCAGGTCAC GGAAACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGTCGCTCGATGCTCGGAAAAT]
[+] EMBL BM650876             [            CCGAATTATTCAGCACAAAAAAGCACGAAAAATCCCCCGACAACCGGCAGCGGCACAGTTCCTTCTGCCATGTCCGGGTTAACCTGTCTTCCTGCCTGTTTCTGTTGAGTGATTCGAACATTCTCTTCACTTCGTTGGCTGTGTGTTTTTTTGTGAAGCGTATCAAAACAAAAAAGTCAATTCTACGCGTTCAACAGCGCGGTGTGCCATCGGACATCAATCACCATCACCACGCAAACCACAATGTCGTCCGAGTTACAGCACGAAAATCATCTCATTCAGCTGCGTGCAAAACTGAACGAGCGTAAAATTAAGCTATGGGAGGTGCCATACATGCAGGTGGAAGGTGATGAGCAGCGGCACAGCAACGGCGAAGAGATGCTCCGGCTGGCCGAACAGTTCGGTGCCGAGCTCGGTATTGCGACGGAGCTCTGCCTCCGGACGCTGACCGCACTGCAGCGGAATGCGCTGGACAAGCTGCAGTCGAAGGATGAGTTCCAGCGGACGGGCCTCGCGACGGTACGTGTCCGTGCACCGACCCAGACCGGTTCGAACCGGG AGTTCGATCTGAAGGTGCAGGTCACGGGAAACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGTCG                 ]




>consensus_5231#1
CCGCCCACGCGTCCGAATTATTCAGCACAAAAAAGCACGAAAAATCCCCCGACAACCGGC
AGCGGCACAGTTCCTTCTGCCATGTCCGGGTTAACCTGTCTTCCTGCCTGTTTCTGTTGA
GTGATTCGAACATTCTCTTCACTTCGTTGGCTGTGTGTTTTTTTGTGAAGCGTATCAAAA
CAAAAAAGTCAATTCTACGCGTTCAACAGCGCGGTGTGCCATCGGACATCAATCACCATC
ACCACGCAAACCACAATGTCGTCCGAGTTACAGCACGAAAATCATCTCATTCAGCTGCGT
GCAAAACTGAACGAGCGTAAAATTAAGCTATGGGAGGTGCCATACATGCAGGTGGAAGGT
GATGAGCAGCGGCACAGCAACGGCGAAGAGATGCTCCGGCTGGCCGAACAGTTCGGTGCC
GAGCTCGGTATTGCGACGGAGCTCTGCCTCCGGACGCTGACCGCACTGCAGCGGAATGCG
CTGGACAAGCTGCAGTCGAAGGATGAGTTCCAGCGGACGGGCCTCGCGACGGTACGTGTC
CGTGCACCGACCCAGACCGGTTCGAACCGGGCAGTTCGATCTGAAAGTGCAGGTCACGGA
AACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGTCGCTCGATGCTCGGAAAAT

consensusID : consensus_5231#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence

                              [GCAGAATTCCCGAGGTTAAGGAGCTCTGCCTCCGGACGCTGACCGCACTGCAGNGGAATGCGCTGGACAAGCTGCAGTCGAAGNGATGAGTTCCAGCGGACGGGCCTCGCGACGGTACGTGTCTGTGCACCGACCCAGACCGGTTCGAACCGGGAGTTCGATCTGAAGGTGCAGGTCACGGAAACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGTCGCTCGATGCTCGGAAAATCAAGCTGGTATTGCTCGGGCAAGATCATAAACTGGAGTGCGTTACACTCCAGGAGCAGAAGGTATCGAACGGGGCACCGTGATTGGCCCTGGTGATGGCGTGCAGCGACGGACCGAAGCGAAGCGCGAATGCTCGACGTACGATCGTGTGCACAAGATTCGCTCCGATGCCGAGATTGCTGATCAACGAGAACGATAGCTCGAAACTTTCTGAGCATTGAGGACCAATCAGGCGATGCGATCTTTCTGCAAAGAATGAAACAGCAAGCACTCCTCATGGGACTCANCCTGGTACGAGCAAGGG]

[+] EMBL AL696169             [GCAGAATTCCCGAGGTTAAGGAGCTCTGCCTCCGGACGCTGACCGCACTGCAGNGGAATGCGCTGGACAAGCTGCAGTCGAAGNGATGAGTTCCAGCGGACGGGCCTCGCGACGGTACGTGTCTGTGCACCGACCCAGACCGGTTCGAACCGGGAGTTCGATCTGAAGGTGCAGGTCACGGAAACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGTCGCTCGATGCTCGGAAAATCAAGCTGGTATTGCTCGGGCAAGATCATAAACTGGAGTGCGTTACACTCCAGGAGCAGAAGGTATCGAACGGGGCACCGTGATTGGCCCTGGTGATGGCGTGCAGCGACGGACCGAAGCGAAGCGCGAATGCTCGACGTACGATCGTGTGCACAAGATTCGCTCCGATGCCGAGATTGCTGATCAACGAGAACGATAGCTCGAAACTTTCTGAGCATTGAGGACCAATCAGGCGATGCGATCTTTCTGCAAAGAATGAAACAGCAAGCACTCCTCATGGGACTCANCCTGGTACGAGCAAGGG]




>consensus_5231#2
GCAGAATTCCCGAGGTTAAGGAGCTCTGCCTCCGGACGCTGACCGCACTGCAGNGGAATG
CGCTGGACAAGCTGCAGTCGAAGNGATGAGTTCCAGCGGACGGGCCTCGCGACGGTACGT
GTCTGTGCACCGACCCAGACCGGTTCGAACCGGGAGTTCGATCTGAAGGTGCAGGTCACG
GAAACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGTCGCTCGATGCTCGGAAA
ATCAAGCTGGTATTGCTCGGGCAAGATCATAAACTGGAGTGCGTTACACTCCAGGAGCAG
AAGGTATCGAACGGGGCACCGTGATTGGCCCTGGTGATGGCGTGCAGCGACGGACCGAAG
CGAAGCGCGAATGCTCGACGTACGATCGTGTGCACAAGATTCGCTCCGATGCCGAGATTG
CTGATCAACGAGAACGATAGCTCGAAACTTTCTGAGCATTGAGGACCAATCAGGCGATGC
GATCTTTCTGCAAAGAATGAAACAGCAAGCACTCCTCATGGGACTCANCCTGGTACGAGC
AAGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5231#1      CCGCCCACGCGTCCGAATTATTCAGCACAAAAAAGCACGAAAAATCCCCCGACAACCGGC 60
consensus_5231#2      -----------GCAGAATTCCCGAGGTTAAGGAGCTCTG------CCTCCGGACGCTGAC 43
consensus_5231#0      ------CCGCGGACGCGTGGGTGAGGACCAATCAGGCAATGCGATCTTTCTGCCAAAGAA 54
                                    *  *     **    *               *   *       *  

consensus_5231#1      AGCGGCACAGTTCCTTCTGCCATGTCCGGGTTAACCTGTCTTCCTGCCTGTTTCTGTTGA 120
consensus_5231#2      CGCACTGCAGNGGAATGCGCTGGACAAGCTGCAGTCGAAGNGATGAGTTCCAGCGGACGG 103
consensus_5231#0      TGAAAAGCAAGCACTCCTCATGGGACTGACCCTGTACGAGAAGGGCAAAGCGGCAATGAA 114
                       *     **                  *                         *      

consensus_5231#1      GTGATTCGAACATTCTCTTCACTTCGTTGGCTGTGTGTTTTTTTGTGAAGCGTATCA--A 178
consensus_5231#2      GCCTCGCGACGGTACGTGTCTGTGCACCGACCCAG-ACCGGTTCGAACCGGGAGTTC--G 160
consensus_5231#0      GGCGGACAGC--TGCGAGGAAGCGCTGCTGCTGCTGCTGGAAGCGGACCACGACTTCCGG 172
                      *     *     * *         *     *             *      *  *     

consensus_5231#1      AACAAAAAAGTCAATTCTACGCGTTCAACAGCGCGGTGTGC---CATCGGAC--ATCAAT 233
consensus_5231#2      ATCTGAAGGTGCAGGTCACGGAAACGGGCAGCCAGCTTTGC---GAGCTGATCGGACAAC 217
consensus_5231#0      AACTGCAACTCCCAGCTGCTGAACGTGGTCGACAACTACGCACTGCTCAATCTCGACATT 232
                      * *   *    *        *         *     *  **      *        **  

consensus_5231#1      CACCATCACCA-CGCAAACCACAATGTC-GTCCGAGTTACAGCACGAAAATCATCTCATT 291
consensus_5231#2      GGCTGTCGCT--CGATGCTCGGAAAATC-AAGCTGGT-ATTGCTCGGGCAAGATCATAAA 273
consensus_5231#0      GTCTGGTGCTATCTAAGACTGAAGAACCTAAACCAACTGCCCGACGCGGAGGAGCGGCTG 292
                        *     *   *         *    *    *           **   *  * *     

consensus_5231#1      CAGCTGCGTG---CAAAACTGAACGAGCG-TAAAATTAAGCTATGGGAGGTGCCATACAT 347
consensus_5231#2      CTGGAGTGCG---TTACACTCCAGGAGCA-GAAGGT---ATCGAACGGGGCACCGTGATT 326
consensus_5231#0      AAAGTGTGCGAGCTCAAGTTCCAGCAGAGCTACGGCAAAAACATGGCCCGCGTCGCGGCA 352
                           * * *     *   *  *  **    *                 *   *      

consensus_5231#1      GCAGGTGGAAGGTGA-TGAGCAGCGGCACAGCAACGGCGAAGA-GATGCTCCGGCTGGCC 405
consensus_5231#2      GGCCCTGGT-GATGG-CGTGCAGCGACGGACCGA-AGCGAAGC-GCGAAT---GCTCGAC 379
consensus_5231#0      ATCCGTGGCGAACAGTCGAACGAGAAGATACTGCTCGTGCGGCTGCACCTGCTGAAAGCC 412
                           ***         *  *        *      * *  *  *    *   *   * *

consensus_5231#1      GAACAGTTCGGTGC-CGAGCTCGGTAT--TGCGACGGAGCTCTGCCTCCGGACGCTGACC 462
consensus_5231#2      GTACGATCGTGTGCACAAGATTCGCTC--CGATGCCGAGAT-TGCTGATCAACGAGAACG 436
consensus_5231#0      GTCCTGTACTTCCACCAGAACAAGCGCGACGATGCGCGGACCATGTTCCGGGTGGTGGAA 472
                      *  *  *        *       *      *   *   *              *      

consensus_5231#1      GCACTGCAGCGGAATGCGCTGGACAAGCTGCAGTCGAAGGATGAGTTCCAGCGGACGGGC 522
consensus_5231#2      ATAGCTCGAAACTTTCTGAGCATTGAGGACCAATCAGGCGATGCGATCTTTCTGCAAAGA 496
consensus_5231#0      ACGGAGCTGCTGAAGCTGCGCATCGACGA-CGACTGTCTGAGCCGGCTGATGGAGTGTGG 531
                            *          *       *    *        **   *             * 

consensus_5231#1      CTCGCGACGGTACGTGTCCGTGCACCGACC-CAGACCGGTTCGAACCGGGCAGTTCGATC 581
consensus_5231#2      AT-GAAACAGCAAGCACTCCTCATGGGACT-CANCCTGGTACGAGCAAGGG--------- 545
consensus_5231#0      GTACGGGATGAAGGAGTGCCGCATAGCGCTGCGCGCCTGCTCGAACGACGTGGAGGCAGC 591
                       *       * * *    *         *  *   *  *  *** *   *          

consensus_5231#1      TGAAAGTGCAGGTCACGGAAACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGT 641
consensus_5231#2      ------------------------------------------------------------
consensus_5231#0      GATCGAGTTCATCCACAGCCAGCGCGAGACGCGCCGGGCGAACGAGCGCCGCTCGGAACG 651
                                                                                  

consensus_5231#1      CGCTCGATGCTCGGAAAAT 660
consensus_5231#2      -------------------
consensus_5231#0      GGAACGCCAGT-------- 662